TCONS_00020263 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020263
Unique NameTCONS_00020263
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length250

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020263 ID=TCONS_00020263|Name=TCONS_00020263|organism=Clytia hemisphaerica|type=transcript|length=250bp
GAGTTCTCTGAACTTGGGTTATTCGTATTTTTCCTATAggctattttcaa
attttattgtaTGCATTCTTTTATGCCTTTTCAATatctttatttaaaat
tttagtgttttaaaattgtttagattaaaaaaggtttctactttattcaa
aaaatgataatatATTAAGATTAGTAAACCAGTGAAAGCTTAAATTGCAA
AGCTTCCAGGAATTAGCTGGAATCAAGTTTGAAAGTTACACAAGAATCTT
Run BLAST on NCBI

transcript from alignment at sc0000350:81606..81855

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020263 ID=TCONS_00020263|Name=TCONS_00020263|organism=Clytia hemisphaerica|type=transcript|length=250bp|location=Sequence derived from alignment at sc0000350:81606..81855 (Clytia hemisphaerica)
AAGATTCTTGTGTAACTTTCAAACTTGATTCCAGCTAATTCCTGGAAGCT
TTGCAATTTAAGCTTTCACTGGTTTACTAATCTTAATatattatcatttt
ttgaataaagtagaaaccttttttaatctaaacaattttaaaacactaaa
attttaaataaagatATTGAAAAGGCATAAAAGAATGCAtacaataaaat
ttgaaaatagccTATAGGAAAAATACGAATAACCCAAGTTCAGAGAACTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011367XLOC_011367Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020263-exon-sc0000350-1491911889:81606..81855TCONS_00020263-exon-sc0000350-1491911889:81606..81855Clytia hemisphaericaexon
TCONS_00020263-exon-sc0000350-1510915933:81606..81855TCONS_00020263-exon-sc0000350-1510915933:81606..81855Clytia hemisphaericaexon
TCONS_00020263-exon-sc0000350-1575043694:81606..81855TCONS_00020263-exon-sc0000350-1575043694:81606..81855Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000350supercontigsc0000350:81606..81855 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.849203	1.03382	1.63388	3.94242	4.61355	6.46012	4.80114	4.6601	1.53168	1.52955	4.23589	2.61186	1.86861	2.87747	4.12905	2.44479	0	2.96483	3.25381	0	0	1.64616	0	1.05118	0	1.70177	0.866915
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020263 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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