TCONS_00020266 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020266
Unique NameTCONS_00020266
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length752

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020266 ID=TCONS_00020266|Name=TCONS_00020266|organism=Clytia hemisphaerica|type=transcript|length=752bp
CGCCTCCTTAATATGGCTTCAGTTACATTTTCACTCAAAATTTCCGTATT
TATTTCTCCCCACGAGAGCGTATCCCGGTCAATAAACTACGAAATATCCG
TAATATATCAGACAAAAtgttcatgacgtcatcagtgcCTCATTCATTGG
ATTTTCCATATTAGGACTTGTGACGTCACAAATGTTCCATTGACCTTTTA
CCCACTGATGTAAGTTATTGAGTCCCCCGGGTTTCTGCTACTAAATTATT
GTTCGACCCGTCTCTAAACGAGAAGTGATTTAAACAAATGAATCTCATAA
TCTACCTCCCGAGCTGGTCTTTCGGCTTCTACGTCAGCAACTACTTCCAG
ACTCattttttgttgacttttgatctttttaaaatgAGAAAGGCGAATAT
TTCGGCTGAACGTTCACAGCTTGTTCGAatcaagttttttttacttttat
aaaaTCTGAATGATTATCAGCCAGAGATATCGATAAACAAACAACATTCC
ATTCCTTTTTGACATCTTCTCATCTTTCCGTCAAATGGCCTCTTCTTCTA
ACTAATTCATCCTACAAATAAGTTTCTGTAGGTCCCAAAGAATTCGTCCT
ATTTGGTTGCCATATTGTCTAGCCGGATTGCCAATAATTAACAAGGTCCC
GTTGTCCCGTGGATGTGGTTTACCACGAGGCTTCATCGATAACGAGCTTT
CAAAACCAAAATGCATTTTCTGATCAAATCTGCGATCCATCCATGGTCTT
GG
Run BLAST on NCBI

transcript from alignment at sc0000350:266256..267007

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020266 ID=TCONS_00020266|Name=TCONS_00020266|organism=Clytia hemisphaerica|type=transcript|length=752bp|location=Sequence derived from alignment at sc0000350:266256..267007 (Clytia hemisphaerica)
CCAAGACCATGGATGGATCGCAGATTTGATCAGAAAATGCATTTTGGTTT
TGAAAGCTCGTTATCGATGAAGCCTCGTGGTAAACCACATCCACGGGACA
ACGGGACCTTGTTAATTATTGGCAATCCGGCTAGACAATATGGCAACCAA
ATAGGACGAATTCTTTGGGACCTACAGAAACTTATTTGTAGGATGAATTA
GTTAGAAGAAGAGGCCATTTGACGGAAAGATGAGAAGATGTCAAAAAGGA
ATGGAATGTTGTTTGTTTATCGATATCTCTGGCTGATAATCATTCAGAtt
ttataaaagtaaaaaaaacttgatTCGAACAAGCTGTGAACGTTCAGCCG
AAATATTCGCCTTTCTcattttaaaaagatcaaaagtcaacaaaaaatGA
GTCTGGAAGTAGTTGCTGACGTAGAAGCCGAAAGACCAGCTCGGGAGGTA
GATTATGAGATTCATTTGTTTAAATCACTTCTCGTTTAGAGACGGGTCGA
ACAATAATTTAGTAGCAGAAACCCGGGGGACTCAATAACTTACATCAGTG
GGTAAAAGGTCAATGGAACATTTGTGACGTCACAAGTCCTAATATGGAAA
ATCCAATGAATGAGgcactgatgacgtcatgaacaTTTTGTCTGATATAT
TACGGATATTTCGTAGTTTATTGACCGGGATACGCTCTCGTGGGGAGAAA
TAAATACGGAAATTTTGAGTGAAAATGTAACTGAAGCCATATTAAGGAGG
CG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011370XLOC_011370Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020266-exon-sc0000350-1491911889:266256..267007TCONS_00020266-exon-sc0000350-1491911889:266256..267007Clytia hemisphaericaexon
TCONS_00020266-exon-sc0000350-1510915933:266256..267007TCONS_00020266-exon-sc0000350-1510915933:266256..267007Clytia hemisphaericaexon
TCONS_00020266-exon-sc0000350-1575043694:266256..267007TCONS_00020266-exon-sc0000350-1575043694:266256..267007Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000350supercontigsc0000350:266256..267007 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.130673	0.0637134	0.591819	0.289501	0	0	0.0840004	0	0	0	0	0	1.34705	2.88811	0	0	0.637623	0.955178	3.26435	3.56126	1.07391	1.20169	0.449482	0.544859	0.280596	0.751275	0.0895894	0.191224	0.145037	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020266 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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