TCONS_00020392 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020392
Unique NameTCONS_00020392
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length784

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020392 ID=TCONS_00020392|Name=TCONS_00020392|organism=Clytia hemisphaerica|type=transcript|length=784bp
CCAAAACAGAGTAAATACCCCTGCAGAGCTGATTGGTGTACCAGCGACCA
AAATACAAAACGCAAGTGATATCAATCTTACTAAATATATTCCAAACATA
ACGGACGAGCAAAATCTAAAAGAAGAGCTGAAGGTTTTGGTGGCTAGGGA
TTTAGCAGAATATGTAGACGAGTTGAAATGGATGAAGAAGTTTACACCAG
AGGTTATAACTCACAAGTATATGAAAGAGACAGAAACTGCATCAACAACA
GTAAGAATCTTTTCTAAGAgtttttaatttccattcacCAAGGCCATTAT
GTACTTTAAGCTTTAAATGCAAAACTGAATCTTGGTTTTTCAAACTGTAG
AAAGAACATCCGAAACAAAATCTGAAAGACAGGAAAAACAGAAATTAAAC
GCTGAATAAGACAAAGTAGAATacatcttatttttattttacagtttTCT
TTGGGGGTCCACGATTTGAATGAGAACACCAGTTCTGGAATAACAAAGAT
ATTGAGGGAGATACATCAGTTTGTTCCTGGACATGACACGCCAGATATGT
TAACAACAATCGTCTATGATTTATTGACTTATGAAAGGATGTTGAATGGA
ATTGAACATCAGAAAGATGCGAGTACTGCAACAAAAAGACTGGAAGGGTT
GGTGCCAGGCATTGCTGATTTCCATACCTTTGGAAACATCTTAGAAGTGA
GAGAAAAATAGTATTTTCTTTTCAACTGTGCTGAGTATCATGCTTATTTC
TTGTTGTATGACAGTCTGTCTCAATCAATCTCAA
Run BLAST on NCBI

transcript from alignment at sc0000355:26731..27514

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020392 ID=TCONS_00020392|Name=TCONS_00020392|organism=Clytia hemisphaerica|type=transcript|length=784bp|location=Sequence derived from alignment at sc0000355:26731..27514 (Clytia hemisphaerica)
TTGAGATTGATTGAGACAGACTGTCATACAACAAGAAATAAGCATGATAC
TCAGCACAGTTGAAAAGAAAATACTATTTTTCTCTCACTTCTAAGATGTT
TCCAAAGGTATGGAAATCAGCAATGCCTGGCACCAACCCTTCCAGTCTTT
TTGTTGCAGTACTCGCATCTTTCTGATGTTCAATTCCATTCAACATCCTT
TCATAAGTCAATAAATCATAGACGATTGTTGTTAACATATCTGGCGTGTC
ATGTCCAGGAACAAACTGATGTATCTCCCTCAATATCTTTGTTATTCCAG
AACTGGTGTTCTCATTCAAATCGTGGACCCCCAAAGAaaactgtaaaata
aaaataagatgtATTCTACTTTGTCTTATTCAGCGTTTAATTTCTGTTTT
TCCTGTCTTTCAGATTTTGTTTCGGATGTTCTTTCTACAGTTTGAAAAAC
CAAGATTCAGTTTTGCATTTAAAGCTTAAAGTACATAATGGCCTTGgtga
atggaaattaaaaacTCTTAGAAAAGATTCTTACTGTTGTTGATGCAGTT
TCTGTCTCTTTCATATACTTGTGAGTTATAACCTCTGGTGTAAACTTCTT
CATCCATTTCAACTCGTCTACATATTCTGCTAAATCCCTAGCCACCAAAA
CCTTCAGCTCTTCTTTTAGATTTTGCTCGTCCGTTATGTTTGGAATATAT
TTAGTAAGATTGATATCACTTGCGTTTTGTATTTTGGTCGCTGGTACACC
AATCAGCTCTGCAGGGGTATTTACTCTGTTTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011453XLOC_011453Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020392-exon-sc0000355-1491911889:26731..27514TCONS_00020392-exon-sc0000355-1491911889:26731..27514Clytia hemisphaericaexon
TCONS_00020392-exon-sc0000355-1510915933:26731..27514TCONS_00020392-exon-sc0000355-1510915933:26731..27514Clytia hemisphaericaexon
TCONS_00020392-exon-sc0000355-1575043694:26731..27514TCONS_00020392-exon-sc0000355-1575043694:26731..27514Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000355supercontigsc0000355:26731..27514 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.402185	0.578167	0.679272	0.205042	0.584676	0.364697	0.237977	0.458754	0.17265	0.0798536	0.562597	0.352511	0.468367	0.255692	0.336167	0.282779	0	0.229709	0.58115	0.382479	0.609509	0.468557	0.241549	0.162987	0.13249	0	1.01314	0.103039	0.911932	0.66311
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020392 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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