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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020406 ID=TCONS_00020406|Name=TCONS_00020406|organism=Clytia hemisphaerica|type=transcript|length=905bp
TTTCAATCTCAATAAATTTCAGTCCTCAATAAATCactgcaaatctcagt
gaattTCACATCTTCTAACAGGTCAAGGTTTGTCACATCTTTCTTTTCAC
ATCCTAAATTACCATCGATTTGATCACCACACCTCTCCACATCTTTCAAC
AGTTTCACACTTTGCAACACCTCTCCTCAaaagttcattttcaaaattaa
ttcaaaatttcttaaCGTGCTATTACCACACTCATTCCTAAATTTTAACG
TCCTCAGAATAGATTCCAACGCTTATCAAGCAAGAAATGGTGAAAAGCAG
CCATCATGGCTCAACCGTCGATTCAGCCAAGAGTATAATGCCTTCCAAGA
CATGGTCAACTGGCTAGGAAAGATGAGAAGGAGCTAAGGACGGATGTTTC
GTTGATTACACATCACATCCCTCTGTCAGCATGACGGAATTGCCCGACGA
TGAAACTTTTCTGAAAAACCATTAAATGATCCAGCATGGctTTTTCAGGT
GACGTCCTAGAAGTGAGGCCATTGTGGTGGCAATACAAAAAACACGTCTA
AATTGACACCAATACCAAAAACTTCGGATTCGAACAATTGAAGTTAACCT
GATGCGACTTCCACATTCCAACAAAATTAGAAGTAGGTAAATGACGTGGC
TAGTTCTGGGAAATAATATATTTAGATGTTAAAAATATCATCTGGACTCC
CTCTGGACTAATAGAATCTCTTTGTGGCAAAAACACTCTCCTTGTCACCC
ATTAAGCGCTGGTGACCCCCTGAAAAGGCACGACAAGGAAACATAGTTTT
AAATTCTGCTtcacttttttcgggacacaatgtttttttacttttgaatg
aTATCATTTAAGGTTATCACTCGGCATCTAGAATTTAACCATGCGTCAAA
TGAAC Run BLAST on NCBI transcript from alignment at sc0000356:25261..26679+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020406 ID=TCONS_00020406|Name=TCONS_00020406|organism=Clytia hemisphaerica|type=transcript|length=1419bp|location=Sequence derived from alignment at sc0000356:25261..26679+ (Clytia hemisphaerica)
TTTCAATCTCAATAAATTTCAGTCCTCAATAAATCactgcaaatctcagt
gaattTCACATCTTCTAACAGGTCAAGGTTTGTCACATCTTTCTTTTCAC
ATCCTAAATTACCATCGATTTGATCACCACACCTCTCCACATCTTTCAAC
AGTTTCACACTTTGCAACACCTCTCCTCAaaagttcattttcaaaattaa
ttcaaaatttcttaaCGTGCTATTACCACACTCATTCCTAAATTTTAACG
TCCTCAGAATAGATTCCAACGCTTATCAAGCAAGAAATGGTGAAAAGCAG
CCATCATGGCTCAACCGTCGATTCAGCCAAGAGTATAATGCCTTCCAAGA
CATGGTCAACTGGCTAGGAAAGATGAGAAGGAGCTAAGGACGGATGTTTC
GTTGATTACACATCACATCCCTCTGTCAGCATGACGGAATTGCCCGACGA
TGAAACTTTTCTGAAAAACCATTAAATGATCCAGCATGGGTAAGTCTCTT
GAATTACAACCACTACAACTTGATTAGGCTCTAAACCGAAAGTGTTTACT
GATGTTTGCTTTATTCATTTTCGTTCCCTATTGTATACAAAAGGCCTTAT
TGAACCAAGGGAACATTTTTCAAGAATAGCCCTGCATTgccaaaatgaaa
ttttgcaggtCATTTTACAAGATCTTAtctatatttgttttgttgctgAT
ATCCGGATAAATACATGCAAGGACTTGAAATTCTGGCTTGTCGTGAAAAA
ACAATTCTTAAAACCCAattccactggaaaatttggcaaaaatttgtttc
CTGGTgcgaaaataccctggaattttagcTCCACTGTAATCTAATCATCT
AAAGATTACACtccaaagttttttcaactttggaacaaccaaatttctat
ccccattgggatttcaatggGGATTTTTATCTcgactaaagaaaaaagtt
ccaccggggctgcgagacaggggtgttcttaattaattgttttttttata
tagctTTTTCAGGTGACGTCCTAGAAGTGAGGCCATTGTGGTGGCAATAC
AAAAAACACGTCTAAATTGACACCAATACCAAAAACTTCGGATTCGAACA
ATTGAAGTTAACCTGATGCGACTTCCACATTCCAACAAAATTAGAAGTAG
GTAAATGACGTGGCTAGTTCTGGGAAATAATATATTTAGATGTTAAAAAT
ATCATCTGGACTCCCTCTGGACTAATAGAATCTCTTTGTGGCAAAAACAC
TCTCCTTGTCACCCATTAAGCGCTGGTGACCCCCTGAAAAGGCACGACAA
GGAAACATAGTTTTAAATTCTGCTtcacttttttcgggacacaatgtttt
tttacttttgaatgaTATCATTTAAGGTTATCACTCGGCATCTAGAATTT
AACCATGCGTCAAATGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020406-exon-sc0000356-1491911889:25261..25749 | TCONS_00020406-exon-sc0000356-1491911889:25261..25749 | Clytia hemisphaerica | exon |
| TCONS_00020406-exon-sc0000356-1510915933:25261..25749 | TCONS_00020406-exon-sc0000356-1510915933:25261..25749 | Clytia hemisphaerica | exon |
| TCONS_00020406-exon-sc0000356-1575043694:25261..25749 | TCONS_00020406-exon-sc0000356-1575043694:25261..25749 | Clytia hemisphaerica | exon |
| TCONS_00020406-exon-sc0000356-1491911889:26264..26679 | TCONS_00020406-exon-sc0000356-1491911889:26264..26679 | Clytia hemisphaerica | exon |
| TCONS_00020406-exon-sc0000356-1510915933:26264..26679 | TCONS_00020406-exon-sc0000356-1510915933:26264..26679 | Clytia hemisphaerica | exon |
| TCONS_00020406-exon-sc0000356-1575043694:26264..26679 | TCONS_00020406-exon-sc0000356-1575043694:26264..26679 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000356 | supercontig | sc0000356:25261..26679 + |
Blast
The following BLAST results are available for this feature:
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