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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020418 ID=TCONS_00020418|Name=TCONS_00020418|organism=Clytia hemisphaerica|type=transcript|length=3149bp
gatttacaTTTAGGTAAGATTAAAACAATAAACACCATGAATTGCATGGA
TTGGCTTGCAATTTCGATATTGCTTTGTCAATGTGTTTCTTTGACAACAT
CATATCGATTCATTGCAATGAACCAAAGACGATCACCACAATGTGAGAAA
GTAGAATCTCTTACATGTTTAACCAAAGTTGGAGAAGGTTATAACTCAAC
CATGTTTCCTAACCACCTTGGACACTCTACACAGAAAGAAGCACTAGCAG
AAATGCGTGATTTTGAAGTTCTCATCGAATCGGGCTGCTCCAAATATTTA
AGCACATTTTTGTGCTCTCTATACTTCCCAATCTGTACACCTGGATTAAT
GACAACAGTGAAACCTTGTCGTAACTTGTGTGAGAAATCGAAAAAAGGAT
GTGCTCATATTGTCCAAAAGTACGGATACGAATGGAAATTCAACTGCACA
CAATTCCCAGACCCGGCCACAAGTGGAGAGATTTGTGTTGGTGCAACAAC
AGTTGATGCTAATCAAGTAGAGGATAAAAGCGTAgccaagaaagaaaaga
aaaccaaGAAGAAGGCTCGAATGGCTGGTGGTTCTGAAAATGACATTCTT
GATATAACTTGTCCCCGAAACAAATACATTTTCGTTCGAAAAGTCATGCA
TTTTGGTGACTCAACGTGCTGTAAGGTTGCATCCAAAGCTGTCTTGACCG
CTTTATGTAATGGTAAAAGGCATTGTAAATTCACTGTCGCCCCTGAGAGT
CTTGGAGGACATTGTGAGAAAGGCAGAACAGGACAAATCATGGTCCGTTA
TCGATGTACAAGTCATAAAGATAAGAACTGCTCACAACAAAATGCCATCC
CacgaaaatcacgaaaaaataCCAGTTAGATAAAGGAATAGCACTAATCG
GTTAATTCGAAGAAAACTTGTGTGTCCTTTTCTTGTGTAAATAGTATATC
AATAGTCTGAGAAGTTTTTGCCGTGTTTTTTTGGCAATTTAACAGGCCTA
GACCTTTCTAAACTACCAGTAAGTCTAGCGCAACAGAGAGCACCGTTTAA
GTTTTCTCAGGCTAATACAAGCATTAAGACAAATCTTGGTAGGGTTAGAA
ACGCCCGATTTCCGAAACTCGAACCTCTGATGATTCTACAGAGACTTGAT
TGTGTAGATAACCTTCAAAATTTAGTATAGAGGTACAAACcttggcaaaa
attttgttttaaaattgccATTTTTTAAAGTGTGGAATTTCTTAAAGTTT
TATTACTTTGATACAGTGTTCCGCGACAAGGTATACTCAAAAACTAACTT
AAATTTTAGATTAGCTGAAGGCGCATTCAACGTTCTACGGTGAAAATTTC
ATTGCGAAAAAAGTCtttgttttagagatatgaagcTTTAAGCACACTAA
GTTGGAGATGAAAATAGTCGAGATTGTAaactttcaaagcaaaaaaaaac
taattgacTTTTGATTGACAGCTCTTTTTTATGTCATTTTGATGAAACCT
TACTTTTTCAGTATACGTTTTTCCGGAACACACtatagttttttatttgt
ttttaatatATAACTTTGATCGtcattttgatacattttttacagatatt
ttttaatatatttgaTCTATTCAAAGAATTGAAGTCTTAAGTTAGAGACC
TCAGTTTACTCCCTAAGGCTCGCCAAAGTAAGGGAAGTAAAGTTATTCTT
TTTGCCGCCCCTCTTTAATTATGCATTTGGGTGATATAGGAATGATAGAC
GTATTTTCCTGTTAGATTCAATCTGTTAGTTTTACCTGATGATTATGTTG
CTAATTAGATGCTTTTGATATTGCATCTTAATTAGTCCCAATTAATCTGT
ggaattttgattgaattacAATCTGAAACTCTCATAGAAAAAAAGGCTTG
TCCGCTGTtgcactttttttaatttcttgcaTAAAAGTAAGACTTAGCCA
AAAAAATCGAACTATTTTCTGCTATACTGCTGGTGATATTAGCTAGATTA
CAAATACACAACCCTTTCTCAAGATTTCTAAGTCAATCAAAATACGTGCA
CAGAAAACTGTGCTAGGTTTCTCCTgcaatcggcgccgaaatatattggc
acttttgggtattttaacgtttttcagaatttaaagatcgggcgagaatt
gcagtttcagtacttccactttgtttcattggatttttcgatttgggagg
ggttactAGTAAGTGGATTCCAGGCTATACAGGCTATCTGGTATTTTCAG
CCtcattggaacatttttgagcttttagatcctgagatcttaaggtccta
agttttaagtctcatgttaaaactcaaagtTAAAACTATACTTTCTAACC
GTACTTGTAAGAATGTAAGAATGgtcgaataattttttttataagaacat
caaaaattttctcagctttttgacttttaagcctaacaatgttcttaacc
ctttaagtgccacggtcatttttttctaagttgcgcggacctgcctgaat
gatggAAAAGTGCCCAGTAGTAAAACTCCAAACTAATTCGCTGGAAGACg
gaatcaagtaaagcagggccaaatttggaggttcttggatgactcgttga
ccaaaaatggtcaaaaaacggtcaaaatcttaaaaaagtggatttttgtc
aaatttttgtattttttgactttttggcttaaaatctcgctagaaaaact
aatttttgatttttttgcttgaccatgaagcacaatccaattcctacgag
ttagacaaaaaatgacgatttctaactcaaactgggagGGCTTcaccctc
ctacatagcccgggtctgatatatacgacattggcacctAAAAGggttaa
cttgttcttaatattttggtcatggGAGccttcttatatagtttgttctt
attaaaaaaacatacaATGCAAGTCCGAAAATGGTCATAAGGTTTTTTTT
GGattaaattatttcatttttctgttgattatcaaaattataaaatttcc
tAGTTCTACTGTTAGATATTaacaaaagtgttttctttttaaaaagttta
gcataaaaacgaaataaaaagCCCTGAAATGTGTTTTCAATATGAGTCAA
TGAATCAATTTTAGAGAGTGCTTTTAGTATATTATTGTCAATAGTTAGT Run BLAST on NCBI protein sequence of sFRP (secreted Frizzled related protein) >TCONS_00020418-protein ID=TCONS_00020418-protein|Name=sFRP (secreted Frizzled related protein)|organism=Clytia hemisphaerica|type=polypeptide|length=292bp
DLHLGKIKTINTMNCMDWLAISILLCQCVSLTTSYRFIAMNQRRSPQCEK
VESLTCLTKVGEGYNSTMFPNHLGHSTQKEALAEMRDFEVLIESGCSKYL
STFLCSLYFPICTPGLMTTVKPCRNLCEKSKKGCAHIVQKYGYEWKFNCT
QFPDPATSGEICVGATTVDANQVEDKSVAKKEKKTKKKARMAGGSENDIL
DITCPRNKYIFVRKVMHFGDSTCCKVASKAVLTALCNGKRHCKFTVAPES
LGGHCEKGRTGQIMVRYRCTSHKDKNCSQQNAIPRKSRKNTS Run BLAST on NCBI transcript from alignment at sc0000356:286153..289753+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020418 ID=TCONS_00020418|Name=TCONS_00020418|organism=Clytia hemisphaerica|type=transcript|length=3601bp|location=Sequence derived from alignment at sc0000356:286153..289753+ (Clytia hemisphaerica)
gatttacaTTTAGGTAAGATTAAAACAATAAACACCATGAATTGCATGGA
TTGGCTTGCAATTTCGATATTGCTTTGTCAATGTGTTTCTTTGACAACAT
CATATCGATTCATTGCAATGAACCAAAGACGATCACCACAATGTGAGAAA
GTAGAATCTCTTACATGTTTAACCAAAGTTGGAGAAGGTTATAACTCAAC
CATGTTTCCTAACCACCTTGGACACTCTACACAGAAAGAAGCACTAGCAG
AAATGCGTGATTTTGAAGTTCTCATCGAATCGGGCTGCTCCAAATATTTA
AGCACATTTTTGTGCTCTCTATACTTCCCAATCTGTACACCTGGATTAAT
GACAACAGTGAAACCTTGTCGTAACTTGTGTGAGAAATCGAAAAAAGGAT
GTGCTCATATTGTCCAAAAGTACGGATACGAATGGAAATTCAACTGCACA
CAATTCCCAGACCCGGCCACAAGTGGAGAGATTTGTGTTGGTGCAACAAC
AGTTGATGCTAATCAAGTAGAGGATAAAAGCGTAgccaagaaagaaaaga
aaaccaaGAAGAAGGGTAAGAAAGAATTACAAATAGTTTTGTCTCAAAGA
GTATTAACTTCAATATCGTCAGAGCTACATTTTAAATTAAGCTTTcttct
cagctcccagtaaaaAGATTAAAGATAAGCCGTTAAGATATCCTTCCATA
GGTGGGAACCTAATGAGATAAAAAAGTATGGAAACGTCTACAGATGTATG
ATTGTTTGATTACGCACGCTTGACGTGTTTTTCGAATTCATCAtataaat
attcttaactttttgggaaaaatcatcctgaaatattcttacggtattct
taggttttgaTCCAAACCCAGCCAAAATCTAGTTTGTAATAGATACctca
agcaaaaattttgtaTCTTTGTGGAACCTTTAATATCGGCCAAGTTCAtc
ataaatgttcttataaaataaattcttattaaaaaagcgtgtaatactTT
TTGTCCTTCTTTTTTAGCTCGAATGGCTGGTGGTTCTGAAAATGACATTC
TTGATATAACTTGTCCCCGAAACAAATACATTTTCGTTCGAAAAGTCATG
CATTTTGGTGACTCAACGTGCTGTAAGGTTGCATCCAAAGCTGTCTTGAC
CGCTTTATGTAATGGTAAAAGGCATTGTAAATTCACTGTCGCCCCTGAGA
GTCTTGGAGGACATTGTGAGAAAGGCAGAACAGGACAAATCATGGTCCGT
TATCGATGTACAAGTCATAAAGATAAGAACTGCTCACAACAAAATGCCAT
CCCacgaaaatcacgaaaaaataCCAGTTAGATAAAGGAATAGCACTAAT
CGGTTAATTCGAAGAAAACTTGTGTGTCCTTTTCTTGTGTAAATAGTATA
TCAATAGTCTGAGAAGTTTTTGCCGTGTTTTTTTGGCAATTTAACAGGCC
TAGACCTTTCTAAACTACCAGTAAGTCTAGCGCAACAGAGAGCACCGTTT
AAGTTTTCTCAGGCTAATACAAGCATTAAGACAAATCTTGGTAGGGTTAG
AAACGCCCGATTTCCGAAACTCGAACCTCTGATGATTCTACAGAGACTTG
ATTGTGTAGATAACCTTCAAAATTTAGTATAGAGGTACAAACcttggcaa
aaattttgttttaaaattgccATTTTTTAAAGTGTGGAATTTCTTAAAGT
TTTATTACTTTGATACAGTGTTCCGCGACAAGGTATACTCAAAAACTAAC
TTAAATTTTAGATTAGCTGAAGGCGCATTCAACGTTCTACGGTGAAAATT
TCATTGCGAAAAAAGTCtttgttttagagatatgaagcTTTAAGCACACT
AAGTTGGAGATGAAAATAGTCGAGATTGTAaactttcaaagcaaaaaaaa
actaattgacTTTTGATTGACAGCTCTTTTTTATGTCATTTTGATGAAAC
CTTACTTTTTCAGTATACGTTTTTCCGGAACACACtatagttttttattt
gtttttaatatATAACTTTGATCGtcattttgatacattttttacagata
ttttttaatatatttgaTCTATTCAAAGAATTGAAGTCTTAAGTTAGAGA
CCTCAGTTTACTCCCTAAGGCTCGCCAAAGTAAGGGAAGTAAAGTTATTC
TTTTTGCCGCCCCTCTTTAATTATGCATTTGGGTGATATAGGAATGATAG
ACGTATTTTCCTGTTAGATTCAATCTGTTAGTTTTACCTGATGATTATGT
TGCTAATTAGATGCTTTTGATATTGCATCTTAATTAGTCCCAATTAATCT
GTggaattttgattgaattacAATCTGAAACTCTCATAGAAAAAAAGGCT
TGTCCGCTGTtgcactttttttaatttcttgcaTAAAAGTAAGACTTAGC
CAAAAAAATCGAACTATTTTCTGCTATACTGCTGGTGATATTAGCTAGAT
TACAAATACACAACCCTTTCTCAAGATTTCTAAGTCAATCAAAATACGTG
CACAGAAAACTGTGCTAGGTTTCTCCTgcaatcggcgccgaaatatattg
gcacttttgggtattttaacgtttttcagaatttaaagatcgggcgagaa
ttgcagtttcagtacttccactttgtttcattggatttttcgatttggga
ggggttactAGTAAGTGGATTCCAGGCTATACAGGCTATCTGGTATTTTC
AGCCtcattggaacatttttgagcttttagatcctgagatcttaaggtcc
taagttttaagtctcatgttaaaactcaaagtTAAAACTATACTTTCTAA
CCGTACTTGTAAGAATGTAAGAATGgtcgaataattttttttataagaac
atcaaaaattttctcagctttttgacttttaagcctaacaatgttcttaa
ccctttaagtgccacggtcatttttttctaagttgcgcggacctgcctga
atgatggAAAAGTGCCCAGTAGTAAAACTCCAAACTAATTCGCTGGAAGA
Cggaatcaagtaaagcagggccaaatttggaggttcttggatgactcgtt
gaccaaaaatggtcaaaaaacggtcaaaatcttaaaaaagtggatttttg
tcaaatttttgtattttttgactttttggcttaaaatctcgctagaaaaa
ctaatttttgatttttttgcttgaccatgaagcacaatccaattcctacg
agttagacaaaaaatgacgatttctaactcaaactgggagGGCTTcaccc
tcctacatagcccgggtctgatatatacgacattggcacctAAAAGggtt
aacttgttcttaatattttggtcatggGAGccttcttatatagtttgttc
ttattaaaaaaacatacaATGCAAGTCCGAAAATGGTCATAAGGTTTTTT
TTGGattaaattatttcatttttctgttgattatcaaaattataaaattt
cctAGTTCTACTGTTAGATATTaacaaaagtgttttctttttaaaaagtt
tagcataaaaacgaaataaaaagCCCTGAAATGTGTTTTCAATATGAGTC
AATGAATCAATTTTAGAGAGTGCTTTTAGTATATTATTGTCAATAGTTAG
T Coding sequence (CDS) from alignment at sc0000356:286153..289753+ >TCONS_00020418 ID=TCONS_00020418|Name=TCONS_00020418|organism=Clytia hemisphaerica|type=CDS|length=1758bp|location=Sequence derived from alignment at sc0000356:286153..289753+ (Clytia hemisphaerica)
gatttacaTTTAGGTAAGATTAAAACAATAAACACCATGAATTGCATGGA
TTGGCTTGCAATTTCGATATTGCTTTGTCAATGTGTTTCTTTGACAACAT
CATATCGATTCATTGCAATGAACCAAAGACGATCACCACAATGTGAGAAA
GTAGAATCTCTTACATGTTTAACCAAAGTTGGAGAAGGTTATAACTCAAC
CATGTTTCCTAACCACCTTGGACACTCTACACAGAAAGAAGCACTAGCAG
AAATGCGTGATTTTGAAGTTCTCATCGAATCGGGCTGCTCCAAATATTTA
AGCACATTTTTGTGCTCTCTATACTTCCCAATCTGTACACCTGGATTAAT
GACAACAGTGAAACCTTGTCGTAACTTGTGTGAGAAATCGAAAAAAGGAT
GTGCTCATATTGTCCAAAAGTACGGATACGAATGGAAATTCAACTGCACA
CAATTCCCAGACCCGGCCACAAGTGGAGAGATTTGTGTTGGTGCAACAAC
AGTTGATGCTAATCAAGTAGAGGATAAAAGCGTAgccaagaaagaaaaga
aaaccaaGAAGAAGGCTCGAATGGCTGGTGGTTCTGAAAATGACATTCTT
GATATAACTTGTCCCCGAAACAAATACATTTTCGTTCGAAAAGTCATGCA
TTTTGGTGACTCAACGTGCTGTAAGGTTGCATCCAAAGCTGTCTTGACCG
CTTTATGTAATGGTAAAAGGCATTGTAAATTCACTGTCGCCCCTGAGAGT
CTTGGAGGACATTGTGAGAAAGGCAGAACAGGACAAATCATGGTCCGTTA
TCGATGTACAAGTCATAAAGATAAGAACTGCTCACAACAAAATGCCATCC
CacgaaaatcacgaaaaaataCCAGTTAGgatttacaTTTAGGTAAGATT
AAAACAATAAACACCATGAATTGCATGGATTGGCTTGCAATTTCGATATT
GCTTTGTCAATGTGTTTCTTTGACAACATCATATCGATTCATTGCAATGA
ACCAAAGACGATCACCACAATGTGAGAAAGTAGAATCTCTTACATGTTTA
ACCAAAGTTGGAGAAGGTTATAACTCAACCATGTTTCCTAACCACCTTGG
ACACTCTACACAGAAAGAAGCACTAGCAGAAATGCGTGATTTTGAAGTTC
TCATCGAATCGGGCTGCTCCAAATATTTAAGCACATTTTTGTGCTCTCTA
TACTTCCCAATCTGTACACCTGGATTAATGACAACAGTGAAACCTTGTCG
TAACTTGTGTGAGAAATCGAAAAAAGGATGTGCTCATATTGTCCAAAAGT
ACGGATACGAATGGAAATTCAACTGCACACAATTCCCAGACCCGGCCACA
AGTGGAGAGATTTGTGTTGGTGCAACAACAGTTGATGCTAATCAAGTAGA
GGATAAAAGCGTAgccaagaaagaaaagaaaaccaaGAAGAAGGCTCGAA
TGGCTGGTGGTTCTGAAAATGACATTCTTGATATAACTTGTCCCCGAAAC
AAATACATTTTCGTTCGAAAAGTCATGCATTTTGGTGACTCAACGTGCTG
TAAGGTTGCATCCAAAGCTGTCTTGACCGCTTTATGTAATGGTAAAAGGC
ATTGTAAATTCACTGTCGCCCCTGAGAGTCTTGGAGGACATTGTGAGAAA
GGCAGAACAGGACAAATCATGGTCCGTTATCGATGTACAAGTCATAAAGA
TAAGAACTGCTCACAACAAAATGCCATCCCacgaaaatcacgaaaaaata
CCAGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020418-exon-sc0000356-1491911889:286153..286717 | TCONS_00020418-exon-sc0000356-1491911889:286153..286717 | Clytia hemisphaerica | exon |
| TCONS_00020418-exon-sc0000356-1510915933:286153..286717 | TCONS_00020418-exon-sc0000356-1510915933:286153..286717 | Clytia hemisphaerica | exon |
| TCONS_00020418-exon-sc0000356-1575043694:286153..286717 | TCONS_00020418-exon-sc0000356-1575043694:286153..286717 | Clytia hemisphaerica | exon |
| TCONS_00020418-exon-sc0000356-1491911889:287170..289753 | TCONS_00020418-exon-sc0000356-1491911889:287170..289753 | Clytia hemisphaerica | exon |
| TCONS_00020418-exon-sc0000356-1510915933:287170..289753 | TCONS_00020418-exon-sc0000356-1510915933:287170..289753 | Clytia hemisphaerica | exon |
| TCONS_00020418-exon-sc0000356-1575043694:287170..289753 | TCONS_00020418-exon-sc0000356-1575043694:287170..289753 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000356 | supercontig | sc0000356:286153..289753 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR020067 | Frizzled_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00020418 vs. Swiss-Prot (Human)
Match: FZD7 (Frizzled-7 OS=Homo sapiens GN=FZD7 PE=1 SV=2) HSP 1 Score: 97.4413 bits (241), Expect = 1.188e-20 Identity = 47/109 (43.12%), Postives = 69/109 (63.30%), Query Frame = 1
Query: 187 GYNSTMFPNHLGHSTQKEALAEMRDFEVLIESGCSKYLSTFLCSLYFPICTPGLMTTVKPCRNLCEKSKKGCAHIVQKYGYEW--KFNCTQFPDPATSGEICVGATTVD 507
YN T+ PN LGH+ Q++A E+ F L++ CS L FLCS+Y P+CT L + PCR+LCE++++GC ++ K+G++W + C FP +GEICVG T D
Sbjct: 61 AYNQTILPNLLGHTNQEDAGLEVHQFYPLVKVQCSPELRFFLCSMYAPVCT-VLDQAIPPCRSLCERARQGCEALMNKFGFQWPERLRCENFPV-HGAGEICVGQNTSD 167
The following BLAST results are available for this feature:
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