TCONS_00020447 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020447
Unique NameTCONS_00020447
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length421

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020447 ID=TCONS_00020447|Name=TCONS_00020447|organism=Clytia hemisphaerica|type=transcript|length=421bp
AGTCAACCGTCTGTATAGTCACTTTCCCATGAATATTTTGGTTGCTTTCA
TTTATAGAGACCTCAATTATACTGAATTTTACATTCGTTCTTTCCTCCTT
TACCGTATTTCGGTCTTTCCAAGAAAGCCTGTCCCGGCATATTTGCATTT
GTTTCGACCAATGAAACTGGTCAAAAACTGCTTTTTCAGCCTCACTATCT
ATTTTATGTGGATCATCAGCAAGGTATTGTAATAAACCATGTGTCTGTGA
TTTgaatttgtaaatttgaatCGTTGATGTAAGTATCGACAAACCAAAAC
atgaaatgataaaatattttgaacatctttttaacCTTGAAAACATCTAC
AGCAAAgtttaaattcttaattttatGTTGGCCACCACTATCAATTAAAA
GGTACGAAGATTCAGTTTAAC
Run BLAST on NCBI

protein sequence of TCONS_00020447-protein

>TCONS_00020447-protein ID=TCONS_00020447-protein|Name=TCONS_00020447-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
MFSRLKRCSKYFIISCFGLSILTSTIQIYKFKSQTHGLLQYLADDPHKID
SEAEKAVFDQFHWSKQMQICRDRLSWKDRNTVKEERTNVKFSIIEVSINE
SNQNIHGKVTIQTVD
Run BLAST on NCBI

transcript from alignment at sc0000356:212944..213364

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020447 ID=TCONS_00020447|Name=TCONS_00020447|organism=Clytia hemisphaerica|type=transcript|length=421bp|location=Sequence derived from alignment at sc0000356:212944..213364 (Clytia hemisphaerica)
GTTAAACTGAATCTTCGTACCTTTTAATTGATAGTGGTGGCCAACataaa
attaagaatttaaacTTTGCTGTAGATGTTTTCAAGgttaaaaagatgtt
caaaatattttatcatttcatGTTTTGGTTTGTCGATACTTACATCAACG
attcaaatttacaaattcAAATCACAGACACATGGTTTATTACAATACCT
TGCTGATGATCCACATAAAATAGATAGTGAGGCTGAAAAAGCAGTTTTTG
ACCAGTTTCATTGGTCGAAACAAATGCAAATATGCCGGGACAGGCTTTCT
TGGAAAGACCGAAATACGGTAAAGGAGGAAAGAACGAATGTAAAATTCAG
TATAATTGAGGTCTCTATAAATGAAAGCAACCAAAATATTCATGGGAAAG
TGACTATACAGACGGTTGACT

Coding sequence (CDS) from alignment at sc0000356:212944..213364

>TCONS_00020447 ID=TCONS_00020447|Name=TCONS_00020447|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at sc0000356:212944..213364 (Clytia hemisphaerica)
ATGTTTTCAAGgttaaaaagatgttcaaaatattttatcatttcatGTTT
TGGTTTGTCGATACTTACATCAACGattcaaatttacaaattcAAATCAC
AGACACATGGTTTATTACAATACCTTGCTGATGATCCACATAAAATAGAT
AGTGAGGCTGAAAAAGCAGTTTTTGACCAGTTTCATTGGTCGAAACAAAT
GCAAATATGCCGGGACAGGCTTTCTTGGAAAGACCGAAATACGGTAAAGG
AGGAAAGAACGAATGTAAAATTCAGTATAATTGAGGTCTCTATAAATGAA
AGCAACCAAAATATTCATGGGAAAGTGACTATACAGACGGTTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011490XLOC_011490Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020447-proteinTCONS_00020447-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020447-exon-sc0000356-1491911889:212944..213364TCONS_00020447-exon-sc0000356-1491911889:212944..213364Clytia hemisphaericaexon
TCONS_00020447-exon-sc0000356-1510915933:212944..213364TCONS_00020447-exon-sc0000356-1510915933:212944..213364Clytia hemisphaericaexon
TCONS_00020447-exon-sc0000356-1575043694:212944..213364TCONS_00020447-exon-sc0000356-1575043694:212944..213364Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000356supercontigsc0000356:212944..213364 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	8.35008	3.92334	15.4909	15.9124	7.75614	4.89096	5.25592	3.45503	1.11298	0.346752	0	0	0.628137	0.386292	1.60105	1.30308	0	0.236763	0.575633	0	0.359348	0.641419	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020447 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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