TCONS_00020460 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020460
Unique NameTCONS_00020460
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1215

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020460 ID=TCONS_00020460|Name=TCONS_00020460|organism=Clytia hemisphaerica|type=transcript|length=1215bp
tttattttctagaaAAGATTATTTAATAATTGAGATAAATGGATATTATA
GAGAAAGCTGGAAAAATCTAAATGTGAATTATGAGGTGTGTTGCTACAAA
ACAACAATTCTTAAGGCAAATGCTGTGAGCATCATTATCAACCAATAGTC
ACCATGGTAGATGTGAGGGGTGTTGGTCCCTATTTTCTTCAACAAACACT
TGGAAAAGGGCAAACTGGTGTTGTTAGATTAGGAATTCACagccaaacaa
agaaaaaggttGCTGTCAAGATtgttgataaaaacaaaatccAACCAAAT
GTGCTTGCAAAGGTTGAAAGAGAAATAACAATAATGAAGCTGATAGAACA
TCACAATGTCCTCCAGCTCTATGATGTTTATGAAAGTCGCAAAAATCTGT
TTTTGGTGCTGGAATATGTTGGAGGTGGTGAACTCTTCGATTATTTGGTT
TCAAAAGGGCGCCTTCACATTCTGGAGGCCAAAAAATTCTTTAGGCAAAT
AGTATCAGCCATACACTACTGTCATCATCATTTAGTCTGTCACAGAGATT
TGAAGCCAGAAAATCTGCTacttgatgaaaagaaaaatatcaaaatagct
GACTTTGGAATGGCTTCAGTGCAGATGGAAAATGACATGTTAGAGACCTC
CTGTGGttctccTCACTATGCCTGTCCAGAAGTTGTACGGGGTGTACCGT
ATGATGGTNCTTATATATAAGAAAGCTTTTAAAATATATgagcagaggaa
tgtaaagagatggaaaaacagcttcttgaaaataattgaaaacggctcgt
catataccaggtctcttgcccttaagggagtttatgtcgagtaaataggt
ttcttttgttgtcgctataaaaaatctgcataattagcgtgtNACCGTAT
GATGGTCGTAAAGCAGATACTTGGAGTTGTGGTGTAATCCTTTATGCTTT
AATAGTGGGTTGTTTGCCGTTTGATGATGACAATTTAAGGATTTTACTTG
AAAAGGTCAAAAAAGGAACGTTTACAATACCAGCTTTTGTACCACCCGAC
TGTGTGGACCTTCTTCATAAAATGATCAAAGTCAATCCTGAACAAAGATT
CACTGTAAGTTAACCTGCGtaatgtttttccatttttggttccatttccc
tttttttatgaataaaactaaaataaattaatttgaaattttagcatATA
AGATACCATCGGCAG
Run BLAST on NCBI

protein sequence of TCONS_00020460-protein

>TCONS_00020460-protein ID=TCONS_00020460-protein|Name=TCONS_00020460-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MVDVRGVGPYFLQQTLGKGQTGVVRLGIHSQTKKKVAVKIVDKNKIQPNV
LAKVEREITIMKLIEHHNVLQLYDVYESRKNLFLVLEYVGGGELFDYLVS
KGRLHILEAKKFFRQIVSAIHYCHHHLVCHRDLKPENLLLDEKKNIKIAD
FGMASVQMENDMLETSCGSPHYACPEVVRGVPYDGXYI
Run BLAST on NCBI

transcript from alignment at sc0000357:9862..15201+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020460 ID=TCONS_00020460|Name=TCONS_00020460|organism=Clytia hemisphaerica|type=transcript|length=5340bp|location=Sequence derived from alignment at sc0000357:9862..15201+ (Clytia hemisphaerica)
tttattttctagaaAAGATTATTTAATAATTGAGATAAATGGATATTATA
GAGAAAGCTGGAAAAATCTAAATGTGAATTATGAGGTGTGTTGCTACAAA
ACAACAATTCTTAAGGCAAATGCTGTGAGCATCATTATCAACCAATAGTC
ACCATGGTAGATGTGAGGGGTGTTGGTCCCTATTTTCTTCAACAAACACT
TGGAAAAGGGCAAACTGGTGAGTCTTTATCCATTTTATAACTTGTCATAT
ATTATGTACCAGTCaactttaaaaagaaagaaggtttttctttattatag
aagtatatttcgcaggtctattgacttCTATGAAACAATCTCCTTTTAAG
TTACAGTTTATCGATAACCGTCTTTTTACATTATTCAGGTTGTAGCAAGG
TTGCTTTTACGAAAAGTTGTATCGATTGAGTATGTTATTATCAGATACTG
AGAATTCTTTTACTTACTTTTTAGGTGTTGTTAGATTAGGAATTCACagc
caaacaaagaaaaaggttGCTGTCAAGATtgttgataaaaacaaaatccA
ACCAAATGTGCTTGCAAAGGTAAGAGCAAAAGATGTTGCAAAAAAAACAA
GGCAGATTTTAATATTACTTTAGTTAAATCCTAAATTCAATAAGTCTTAC
CAATGCAAAAACTTTTTGTAGTGAGCATAGCAGCGCTTTTCTCTTTTCAT
TATGAATAAGAAGTTCAGAataaaacagaaaatgttttttaggcCATGTA
TTAGAATGGCAGGGTAGCGTCTGTTAATGGCAGAAAAGAGCACTTTGTAG
TGcttttctactaaaaagtcaGTTTTTACCTAAATATGATCGATTTCAGG
AGGAGCAGCATCCAGTTATTGGATgccatcaaatttttttattttatatc
ttCTTCTTGTAGGTTGAAAGAGAAATAACAATAATGAAGCTGATAGAACA
TCACAATGTCCTCCAGCTCTATGATGTTTATGAAAGTCGCAAAAATCTGT
AAGACTCCTCAGTTAGtttttctcttcaaaaatcTTCCTGCCTTGCAGAA
GTTTAAAAAGGGTGGTTTCTGTTTCAAAATCTAATTTAATTTGAAGAGTC
TAGCTTATTGTGCAGAActctattttgatttttaaaaaagaatatttGTA
CTGCTTTGTATGGAGTAATAAGAAAAGTGTTTGCTTCATTCTTTACTATA
CAGGTTTTTGGTGCTGGAATATGTTGGAGGTGGTGAACTCTTCGATTATT
TGGTTTCAAAAGGGCGCCTTCACATTCTGGAGGTAAAATAGATCTCTTTT
GAAGTTTGATAATTCTCCTCCACAATCTACTATAAAGTACATAAAAACTT
TTGAACTTGATACATCACTAAATAAATCTGCACCatttgatcaaaagtta
tgctgaaattaaaataaaagaaactcACTTTCACATTTTTCATTCACTTT
TAGGCCAAAAAATTCTTTAGGCAAATAGTATCAGCCATACACTACTGTCA
TCATCATTTAGTCTGGTAAGAATCGGTCtgaatttgtttctttttatctA
ATCTTATAATTTCATTAGAGAAAGTAACacaatttttcatttaacttTAA
ACTTTTCTGAAAATGAGTGAAATGTCAGAGAATGTTTCCATATTCTTTTA
ACCtgaactttctttttcttccagTCACAGAGATTTGAAGCCAGAAAATC
TGCTacttgatgaaaagaaaaatatcaaaatagctGACTTTGGAATGGCT
TCAGTGCAGGTTTGTGATctttttttgaatgaatatttgGAGGTTAGATA
TCCTTCAATCATCAAAATTGTGTTTACTCAGCCCACTATTGGCTATGATA
CCATGGGAATAAATTATCGTGGGAACAAATTTTCACAGAACAAATTTTCA
CAGAACAAATTTTCACAGAACAAATTTTCACAGAAcaaattttcgcaaaa
tttcattttgcggtttttcgtcaaatccacaaaatttaattccgcgaaac
aagaatattctcatgataaaaaaaacacctataaaatttgtttttttaag
ggCAAATAGgacattttaaacaaaatatcctctcaactgcgaaattaaat
tccgcgaaacttccaaattttgagctgtgaaccgcaaaattaaaatccgc
taaaatttctttccaCAAAGATTTTCACTTAAGGTATGTCATTGTGAAAT
TACATGGTTTGTGCCATTTTTCAAGCAGTTGCTTTGTAATATAGAAACAT
TGTTGTATTCTCTTttcgaaagtttaaaaagagaaaaatctcAATGAACA
AAACCATAGACctcaagaaaaaaattccttCAATTCTTCCCTCGACATAT
ATCTGATTTATCAATAACAATAGACTTTTGACAtgttttaacaaaagaaa
tgacaagattgttggacctacctccgggtaccccggtggaggtcctataa
attaacccatgtccgttcgttcgttcgttcgttcgttcgttcgttcgttc
gttcgttcgttcgttcgttcgtccgtctgttaccagctttgctcaggatt
ggctcattagttttttttgatttttggcacaatgatgcaaaatgacaatg
cccagATTGTGACGGagccgatttttgagaaaaaatttatttgggcaaat
ttgggccaaaaactacctaaaaatagggttttttggactttgtgcaaaat
cctgtcattacttttttctgaagaatggctgaagtggtttttcccagaaa
atttttattcgccttaaaaaacggattttcgtattttggggaaattccct
ttaaccaaataagaaaatatacctcattatttttttctgaatttttgcac
aatgatgcaaaatggcaatgcctaaaatgtgacggagcccgattttcgaa
aaaaaaaaatttgggcaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNccattttacattattcaacacacaagctttattt
ttccattctgaatttttgtacaattattgtcacttttttcttattttcat
ctgatgttaatcattaggtaggtttCATGGcttccattcagcatgttgct
tgttttgaGTCTTACTTTTTATCTACTTTATTTTCTAGATGGAAAATGAC
ATGTTAGAGACCTCCTGTGGGTATGGATCTGatttttaattacattcatt
gtGTATGGTATAATCTGGTATAATTTCTATTATCTTTGTTCTCCCTGTCA
CTAGCTTGGTCGGAATAATTTTTCTGAATCGGGAATAAACTTCCTATATC
CTAAACTAGAAGGATGTTAACCTcagattttttggaatttcGAACGGGAA
GTTTTAACCCTGATTTGGAAGTCGCATACTAAAATTAAGGTGAAACTTAG
CCTAATCAGGAAAATATTCCCATTTGGGAACCATAGTTATGCCTGTTTCG
GGAAGCTCTTGCCTATTTGGGAGGAATCTTCCTCCTTTGGGATAATGGCA
GGGACTGCTTGTGACTTCTATGTACTGAATTTTTATgcttttgttttagt
tctccTCACTATGCCTGTCCAGAAGTTGTACGGGTAAGTTCATATTAATA
TTTACAATTACTAGCCTTTTTCAGGTGTTGTTAAAGACACCCTTTACTCT
CCCTAGtgtttttttgtaatcaaaTCAGATTGGAATGGTatttttggaag
aaagttttctCTGCTTTGTAATTAAAGTGGGTTTTataatctttcatatt
tttctttcatattcaTTTGGTTGGgccatgatgatgatgataatagCATT
TTAATTTGTTATTTCTAAGGGTGTACCGTATGATGGTNCTTATATATAAG
AAAGCTTTTAAAATATATgagcagaggaatgtaaagagatggaaaaacag
cttcttgaaaataattgaaaacggctcgtcatataccaggtctcttgccc
ttaagggagtttatgtcgagtaaataggtttcttttgttgtcgctataaa
aaatctgcataattagcgtgtNACCGTATGATGGTCGTAAAGCAGATACT
TGGAGTTGTGGTGTAATCCTTTATGCTTTAATAGTGGTAAGAAAAGGTTC
CATATTATAAGAAAAGTGTTTTTCCACATAAGGatgatgaaataattttt
tatgtatttttttcgaatttgcACAAGTGccaaaagcttttttagtgata
ggttaattttgtttatatattCATTTTAGGGTTGTTTGCCGTTTGATGAT
GACAATTTAAGGATTTTACTTGAAAAGGTATTATAAATTCACTGATTATT
TGAGTATATTACCACGAGGTTCCAAGGTTGCTAAGTTGTATTTTATAAAT
AATCAtgagaaattaagaaaaatttgaacaaattgttATATTAAAGGAAA
CTAAATTCGCTATTTTTTGAGCGTATGAAAATTGCTTATTTTCTGAAGCA
ACAATTAGTTCTGAAAAATTGCCCTCCTTAATAACATATTTGATCGGTTT
AAATAGTTCATGCTTTTTGATTTACTCTAGGTCAAAAAAGGAACGTTTAC
AATACCAGCTTTTGTACCACCCGACTGTGTGGACCTTCTTCATAAAATGA
TCAAAGTCAATCCTGAACAAAGATTCACTGTAAGTTAACCTGCGtaatgt
ttttccatttttggttccatttccctttttttatgaataaaactaaaata
aattaatttgaaattttagcatATAAGATACCATCGGCAG

Coding sequence (CDS) from alignment at sc0000357:9862..15201+

>TCONS_00020460 ID=TCONS_00020460|Name=TCONS_00020460|organism=Clytia hemisphaerica|type=CDS|length=5103bp|location=Sequence derived from alignment at sc0000357:9862..15201+ (Clytia hemisphaerica)
ATGGTAGATGTGAGGGGTGTTGGTCCCTATTTTCTTCAACAAACACTTGG
AAAAGGGCAAACTGGTGTTGTTAGATTAGGAATTCACagccaaacaaaga
aaaaggttGCTGTCAAGATtgttgataaaaacaaaatccAACCAAATGTG
CTTGCAAAGGTTGAAAGAGAAATAACAATAATGAAGCTGATAGAACATCA
CAATGTCCTCCAGCTCTATGATGTTTATGAAAGTCGCAAAAATCTGTTTT
TGGTGCTGGAATATGTTGGAGGTGGTGAACTCTTCGATTATTTGGTTTCA
AAAGGGCGCCTTCACATTCTGGAGGCCAAAAAATTCTTTAGGCAAATAGT
ATCAGCCATACACTACTGTCATCATCATTTAGTCTGTCACAGAGATTTGA
AGCCAGAAAATCTGCTacttgatgaaaagaaaaatatcaaaatagctGAC
TTTGGAATGGCTTCAGTGCAGATGGAAAATGACATGTTAGAGACCTCCTG
TGGttctccTCACTATGCCTGTCCAGAAGTTGTACGGGGTGTACCGTATG
ATGGTNCTTATATATAAATGGTAGATGTGAGGGGTGTTGGTCCCTATTTT
CTTCAACAAACACTTGGAAAAGGGCAAACTGGTGTTGTTAGATTAGGAAT
TCACagccaaacaaagaaaaaggttGCTGTCAAGATtgttgataaaaaca
aaatccAACCAAATGTGCTTGCAAAGGTTGAAAGAGAAATAACAATAATG
AAGCTGATAGAACATCACAATGTCCTCCAGCTCTATGATGTTTATGAAAG
TCGCAAAAATCTGTTTTTGGTGCTGGAATATGTTGGAGGTGGTGAACTCT
TCGATTATTTGGTTTCAAAAGGGCGCCTTCACATTCTGGAGGCCAAAAAA
TTCTTTAGGCAAATAGTATCAGCCATACACTACTGTCATCATCATTTAGT
CTGTCACAGAGATTTGAAGCCAGAAAATCTGCTacttgatgaaaagaaaa
atatcaaaatagctGACTTTGGAATGGCTTCAGTGCAGATGGAAAATGAC
ATGTTAGAGACCTCCTGTGGttctccTCACTATGCCTGTCCAGAAGTTGT
ACGGGGTGTACCGTATGATGGTNCTTATATATAAATGGTAGATGTGAGGG
GTGTTGGTCCCTATTTTCTTCAACAAACACTTGGAAAAGGGCAAACTGGT
GTTGTTAGATTAGGAATTCACagccaaacaaagaaaaaggttGCTGTCAA
GATtgttgataaaaacaaaatccAACCAAATGTGCTTGCAAAGGTTGAAA
GAGAAATAACAATAATGAAGCTGATAGAACATCACAATGTCCTCCAGCTC
TATGATGTTTATGAAAGTCGCAAAAATCTGTTTTTGGTGCTGGAATATGT
TGGAGGTGGTGAACTCTTCGATTATTTGGTTTCAAAAGGGCGCCTTCACA
TTCTGGAGGCCAAAAAATTCTTTAGGCAAATAGTATCAGCCATACACTAC
TGTCATCATCATTTAGTCTGTCACAGAGATTTGAAGCCAGAAAATCTGCT
acttgatgaaaagaaaaatatcaaaatagctGACTTTGGAATGGCTTCAG
TGCAGATGGAAAATGACATGTTAGAGACCTCCTGTGGttctccTCACTAT
GCCTGTCCAGAAGTTGTACGGGGTGTACCGTATGATGGTNCTTATATATA
AATGGTAGATGTGAGGGGTGTTGGTCCCTATTTTCTTCAACAAACACTTG
GAAAAGGGCAAACTGGTGTTGTTAGATTAGGAATTCACagccaaacaaag
aaaaaggttGCTGTCAAGATtgttgataaaaacaaaatccAACCAAATGT
GCTTGCAAAGGTTGAAAGAGAAATAACAATAATGAAGCTGATAGAACATC
ACAATGTCCTCCAGCTCTATGATGTTTATGAAAGTCGCAAAAATCTGTTT
TTGGTGCTGGAATATGTTGGAGGTGGTGAACTCTTCGATTATTTGGTTTC
AAAAGGGCGCCTTCACATTCTGGAGGCCAAAAAATTCTTTAGGCAAATAG
TATCAGCCATACACTACTGTCATCATCATTTAGTCTGTCACAGAGATTTG
AAGCCAGAAAATCTGCTacttgatgaaaagaaaaatatcaaaatagctGA
CTTTGGAATGGCTTCAGTGCAGATGGAAAATGACATGTTAGAGACCTCCT
GTGGttctccTCACTATGCCTGTCCAGAAGTTGTACGGGGTGTACCGTAT
GATGGTNCTTATATATAAATGGTAGATGTGAGGGGTGTTGGTCCCTATTT
TCTTCAACAAACACTTGGAAAAGGGCAAACTGGTGTTGTTAGATTAGGAA
TTCACagccaaacaaagaaaaaggttGCTGTCAAGATtgttgataaaaac
aaaatccAACCAAATGTGCTTGCAAAGGTTGAAAGAGAAATAACAATAAT
GAAGCTGATAGAACATCACAATGTCCTCCAGCTCTATGATGTTTATGAAA
GTCGCAAAAATCTGTTTTTGGTGCTGGAATATGTTGGAGGTGGTGAACTC
TTCGATTATTTGGTTTCAAAAGGGCGCCTTCACATTCTGGAGGCCAAAAA
ATTCTTTAGGCAAATAGTATCAGCCATACACTACTGTCATCATCATTTAG
TCTGTCACAGAGATTTGAAGCCAGAAAATCTGCTacttgatgaaaagaaa
aatatcaaaatagctGACTTTGGAATGGCTTCAGTGCAGATGGAAAATGA
CATGTTAGAGACCTCCTGTGGttctccTCACTATGCCTGTCCAGAAGTTG
TACGGGGTGTACCGTATGATGGTNCTTATATATAAATGGTAGATGTGAGG
GGTGTTGGTCCCTATTTTCTTCAACAAACACTTGGAAAAGGGCAAACTGG
TGTTGTTAGATTAGGAATTCACagccaaacaaagaaaaaggttGCTGTCA
AGATtgttgataaaaacaaaatccAACCAAATGTGCTTGCAAAGGTTGAA
AGAGAAATAACAATAATGAAGCTGATAGAACATCACAATGTCCTCCAGCT
CTATGATGTTTATGAAAGTCGCAAAAATCTGTTTTTGGTGCTGGAATATG
TTGGAGGTGGTGAACTCTTCGATTATTTGGTTTCAAAAGGGCGCCTTCAC
ATTCTGGAGGCCAAAAAATTCTTTAGGCAAATAGTATCAGCCATACACTA
CTGTCATCATCATTTAGTCTGTCACAGAGATTTGAAGCCAGAAAATCTGC
TacttgatgaaaagaaaaatatcaaaatagctGACTTTGGAATGGCTTCA
GTGCAGATGGAAAATGACATGTTAGAGACCTCCTGTGGttctccTCACTA
TGCCTGTCCAGAAGTTGTACGGGGTGTACCGTATGATGGTNCTTATATAT
AAATGGTAGATGTGAGGGGTGTTGGTCCCTATTTTCTTCAACAAACACTT
GGAAAAGGGCAAACTGGTGTTGTTAGATTAGGAATTCACagccaaacaaa
gaaaaaggttGCTGTCAAGATtgttgataaaaacaaaatccAACCAAATG
TGCTTGCAAAGGTTGAAAGAGAAATAACAATAATGAAGCTGATAGAACAT
CACAATGTCCTCCAGCTCTATGATGTTTATGAAAGTCGCAAAAATCTGTT
TTTGGTGCTGGAATATGTTGGAGGTGGTGAACTCTTCGATTATTTGGTTT
CAAAAGGGCGCCTTCACATTCTGGAGGCCAAAAAATTCTTTAGGCAAATA
GTATCAGCCATACACTACTGTCATCATCATTTAGTCTGTCACAGAGATTT
GAAGCCAGAAAATCTGCTacttgatgaaaagaaaaatatcaaaatagctG
ACTTTGGAATGGCTTCAGTGCAGATGGAAAATGACATGTTAGAGACCTCC
TGTGGttctccTCACTATGCCTGTCCAGAAGTTGTACGGGGTGTACCGTA
TGATGGTNCTTATATATAAATGGTAGATGTGAGGGGTGTTGGTCCCTATT
TTCTTCAACAAACACTTGGAAAAGGGCAAACTGGTGTTGTTAGATTAGGA
ATTCACagccaaacaaagaaaaaggttGCTGTCAAGATtgttgataaaaa
caaaatccAACCAAATGTGCTTGCAAAGGTTGAAAGAGAAATAACAATAA
TGAAGCTGATAGAACATCACAATGTCCTCCAGCTCTATGATGTTTATGAA
AGTCGCAAAAATCTGTTTTTGGTGCTGGAATATGTTGGAGGTGGTGAACT
CTTCGATTATTTGGTTTCAAAAGGGCGCCTTCACATTCTGGAGGCCAAAA
AATTCTTTAGGCAAATAGTATCAGCCATACACTACTGTCATCATCATTTA
GTCTGTCACAGAGATTTGAAGCCAGAAAATCTGCTacttgatgaaaagaa
aaatatcaaaatagctGACTTTGGAATGGCTTCAGTGCAGATGGAAAATG
ACATGTTAGAGACCTCCTGTGGttctccTCACTATGCCTGTCCAGAAGTT
GTACGGGGTGTACCGTATGATGGTNCTTATATATAAATGGTAGATGTGAG
GGGTGTTGGTCCCTATTTTCTTCAACAAACACTTGGAAAAGGGCAAACTG
GTGTTGTTAGATTAGGAATTCACagccaaacaaagaaaaaggttGCTGTC
AAGATtgttgataaaaacaaaatccAACCAAATGTGCTTGCAAAGGTTGA
AAGAGAAATAACAATAATGAAGCTGATAGAACATCACAATGTCCTCCAGC
TCTATGATGTTTATGAAAGTCGCAAAAATCTGTTTTTGGTGCTGGAATAT
GTTGGAGGTGGTGAACTCTTCGATTATTTGGTTTCAAAAGGGCGCCTTCA
CATTCTGGAGGCCAAAAAATTCTTTAGGCAAATAGTATCAGCCATACACT
ACTGTCATCATCATTTAGTCTGTCACAGAGATTTGAAGCCAGAAAATCTG
CTacttgatgaaaagaaaaatatcaaaatagctGACTTTGGAATGGCTTC
AGTGCAGATGGAAAATGACATGTTAGAGACCTCCTGTGGttctccTCACT
ATGCCTGTCCAGAAGTTGTACGGGGTGTACCGTATGATGGTNCTTATATA
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011503XLOC_011503Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020460-exon-sc0000357-1491911889:9862..10078TCONS_00020460-exon-sc0000357-1491911889:9862..10078Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1510915933:9862..10078TCONS_00020460-exon-sc0000357-1510915933:9862..10078Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1575043694:9862..10078TCONS_00020460-exon-sc0000357-1575043694:9862..10078Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1491911889:10336..10430TCONS_00020460-exon-sc0000357-1491911889:10336..10430Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1510915933:10336..10430TCONS_00020460-exon-sc0000357-1510915933:10336..10430Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1575043694:10336..10430TCONS_00020460-exon-sc0000357-1575043694:10336..10430Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1491911889:10774..10859TCONS_00020460-exon-sc0000357-1491911889:10774..10859Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1510915933:10774..10859TCONS_00020460-exon-sc0000357-1510915933:10774..10859Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1575043694:10774..10859TCONS_00020460-exon-sc0000357-1575043694:10774..10859Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1491911889:11065..11143TCONS_00020460-exon-sc0000357-1491911889:11065..11143Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1510915933:11065..11143TCONS_00020460-exon-sc0000357-1510915933:11065..11143Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1575043694:11065..11143TCONS_00020460-exon-sc0000357-1575043694:11065..11143Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1491911889:11315..11376TCONS_00020460-exon-sc0000357-1491911889:11315..11376Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1510915933:11315..11376TCONS_00020460-exon-sc0000357-1510915933:11315..11376Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1575043694:11315..11376TCONS_00020460-exon-sc0000357-1575043694:11315..11376Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1491911889:11536..11620TCONS_00020460-exon-sc0000357-1491911889:11536..11620Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1510915933:11536..11620TCONS_00020460-exon-sc0000357-1510915933:11536..11620Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1575043694:11536..11620TCONS_00020460-exon-sc0000357-1575043694:11536..11620Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1491911889:13600..13631TCONS_00020460-exon-sc0000357-1491911889:13600..13631Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1510915933:13600..13631TCONS_00020460-exon-sc0000357-1510915933:13600..13631Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1575043694:13600..13631TCONS_00020460-exon-sc0000357-1575043694:13600..13631Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1491911889:14011..14044TCONS_00020460-exon-sc0000357-1491911889:14011..14044Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1510915933:14011..14044TCONS_00020460-exon-sc0000357-1510915933:14011..14044Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1575043694:14011..14044TCONS_00020460-exon-sc0000357-1575043694:14011..14044Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1491911889:14281..14547TCONS_00020460-exon-sc0000357-1491911889:14281..14547Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1510915933:14281..14547TCONS_00020460-exon-sc0000357-1510915933:14281..14547Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1575043694:14281..14547TCONS_00020460-exon-sc0000357-1575043694:14281..14547Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1491911889:14691..14738TCONS_00020460-exon-sc0000357-1491911889:14691..14738Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1510915933:14691..14738TCONS_00020460-exon-sc0000357-1510915933:14691..14738Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1575043694:14691..14738TCONS_00020460-exon-sc0000357-1575043694:14691..14738Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1491911889:14992..15201TCONS_00020460-exon-sc0000357-1491911889:14992..15201Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1510915933:14992..15201TCONS_00020460-exon-sc0000357-1510915933:14992..15201Clytia hemisphaericaexon
TCONS_00020460-exon-sc0000357-1575043694:14992..15201TCONS_00020460-exon-sc0000357-1575043694:14992..15201Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020460-proteinTCONS_00020460-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000357supercontigsc0000357:9862..15201 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.5241	4.36425	17.1183	18.5212	33.7714	27.4023	25.8818	25.3844	21.758	23.2183	21.1106	18.6898	22.8451	21.2517	20.0451	24.5041	21.5054	20.7076	14.268	18.8096	18.421	20.5482	16.796	14.3128	34.1438	29.2598	17.9982	13.5471	27.074	24.467
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR008271Ser/Thr_kinase_AS
IPR017441Protein_kinase_ATP_BS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
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BLAST of TCONS_00020460 vs. Swiss-Prot (Human)
Match: BRSK2 (Serine/threonine-protein kinase BRSK2 OS=Homo sapiens GN=BRSK2 PE=1 SV=3)

HSP 1 Score: 268.855 bits (686), Expect = 7.397e-82
Identity = 125/179 (69.83%), Postives = 155/179 (86.59%), Query Frame = 1 
Query:  172 VGPYFLQQTLGKGQTGVVRLGIHSQTKKKVAVKIVDKNKIQPNVLAKVEREITIMKLIEHHNVLQLYDVYESRKNLFLVLEYVGGGELFDYLVSKGRLHILEAKKFFRQIVSAIHYCHHHLVCHRDLKPENLLLDEKKNIKIADFGMASVQMENDMLETSCGSPHYACPEVVRGVPYDG 708
            VGPY L++TLGKGQTG+V+LG+H  T +KVA+KIV++ K+  +VL KVEREI I+KLIEH +VL+L+DVYE++K L+LVLE+V GGELFDYLV KGRL   EA+KFFRQI+SA+ +CH H +CHRDLKPENLLLDEK NI+IADFGMAS+Q+ + +LETSCGSPHYACPEV+RG  YDG
Sbjct:   16 VGPYRLEKTLGKGQTGLVKLGVHCVTCQKVAIKIVNREKLSESVLMKVEREIAILKLIEHPHVLKLHDVYENKKYLYLVLEHVSGGELFDYLVKKGRLTPKEARKFFRQIISALDFCHSHSICHRDLKPENLLLDEKNNIRIADFGMASLQVGDSLLETSCGSPHYACPEVIRGEKYDG 194

HSP 2 Score: 111.309 bits (277), Expect = 2.905e-26
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:  898 YDGRKADTWSCGVILYALIVGCLPFDDDNLRILLEKVKKGTFTIPAFVPPDCVDLLHKMIKVNPEQRFTV 1107
            YDGRKAD WSCGVIL+AL+VG LPFDDDNLR LLEKVK+G F +P F+PPDC  LL  MI+V+  +R T+
Sbjct:  192 YDGRKADVWSCGVILFALLVGALPFDDDNLRQLLEKVKRGVFHMPHFIPPDCQSLLRGMIEVDAARRLTL 261
The following BLAST results are available for this feature:
BLAST of TCONS_00020460 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BRSK27.397e-8269.83Serine/threonine-protein kinase BRSK2 OS=Homo sapi... [more]
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