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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020518 ID=TCONS_00020518|Name=TCONS_00020518|organism=Clytia hemisphaerica|type=transcript|length=5832bpRun BLAST on NCBI protein sequence of TCONS_00020518-protein >TCONS_00020518-protein ID=TCONS_00020518-protein|Name=TCONS_00020518-protein|organism=Clytia hemisphaerica|type=polypeptide|length=950bp MLLCQEHSQTKLVYVYNLIGNXYKDGFSMRCIGTAIFIYLLLLGVISTIGRun BLAST on NCBI transcript from alignment at sc0000357:56475..78730- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020518 ID=TCONS_00020518|Name=TCONS_00020518|organism=Clytia hemisphaerica|type=transcript|length=22256bp|location=Sequence derived from alignment at sc0000357:56475..78730- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000357:56475..78730- >TCONS_00020518 ID=TCONS_00020518|Name=TCONS_00020518|organism=Clytia hemisphaerica|type=CDS|length=22824bp|location=Sequence derived from alignment at sc0000357:56475..78730- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020518 vs. Swiss-Prot (Human)
Match: S4A8 (Electroneutral sodium bicarbonate exchanger 1 OS=Homo sapiens GN=SLC4A8 PE=1 SV=1) HSP 1 Score: 385.571 bits (989), Expect = 9.435e-112 Identity = 241/612 (39.38%), Postives = 340/612 (55.56%), Query Frame = 1
Query: 877 ASDGEEQVEQLTHTAPASERVKFILGGDGEEEKQVLETP-QLFTELEELFVHLDGNAEWKETARWYKYEEDVEEGGDRWSKPHVATLSLYSLFELRSSLTAGTVILDMEATSLNEISDSVLDNLITCNKLDKGFRQKVKETLLCKHRHHRSAGFRRNLSNIMSSRKSFNHSASKLSRNGTNGHLQDHNTGHTTPNGTAEHTDDHHTNPTNIKLFRNYSQPAFPNLKSQPSIIERSESLPQXXXXXXXXXHLIYQSPPSHDGEDETMENKTPGFLKRLPSNAEASNVLVGEVDFLEKPIAAFVRLSKSCIIDDLTEVPIPTRFVFVMLGPAVSQGRYHEIGRAISTLMADDVFHDVVYKAKCREDLIAGIDEFLEQVTVLPPGEWDPSIRLDPRLYNHHRPRRIAIEPRLEPP------MEHSDKLSDGNDGGSISENSHSSTKTNRLFSGLSRDFNIWRSRK-----RDYKDGFSMRCIGTAIFIYLLLLGVISTIGENETGSTGGLIGTREHILALCISGLVFTVFSGQXXXXXXXXXXXXXXDGLLYNVCSDYNIDFLSFRMLIGLWAVVFLAIFVAVNLSSYLKFFTRFSLEIFVIVPALVLLCYGFVH 2676
AS GEE +E L H P S+RV+FILG + +EE P +LFTEL+E+ + +AEWKETARW K+EEDVE+GG+RWSKP+VATLSL+SLFELRS L GTV+LDM A S+ EISD +LD + L+ R KV+E LL KH HH++ R NL I+ +SF +++ + ++ HL D + G T + T+ N N + SP D K P + AEASNVLVGEVD L++PI AFVRLS + ++ LTEVPIPTRF+F++LGP +YHEIGR+++T+M D++FHDV YKAK R+DL+AGIDEFL+QVTVLPPGEWDPSIR++P P+ + + + + P + H ++ G G +T RLF GL D RK DY+D S++C+ + +F+Y + + T G +T G I E + ++G+ +++F+GQ L +L P+ +F+ +L+ C DY + +LS R IGLW + VA + SS + + TRF+ E F L+C F++
Sbjct: 80 ASQGEEGLEALAHDTP-SQRVQFILGTEEDEE----HVPHELFTELDEICMKEGEDAEWKETARWLKFEEDVEDGGERWSKPYVATLSLHSLFELRSCLINGTVLLDMHANSIEEISDLILDQQELSSDLNDSMRVKVREALLKKH-HHQNEKKRNNLIPIV---RSF----AEVGKKQSDPHLMDKH-GQTVSPQSVPTTNLEVKNGVNCE-----------------------------------------HSPVDLSKVDLHFMKKIP-------TGAEASNVLVGEVDILDRPIVAFVRLSPAVLLSGLTEVPIPTRFLFILLGPVGKGQQYHEIGRSMATIMTDEIFHDVAYKAKERDDLLAGIDEFLDQVTVLPPGEWDPSIRIEP-------PKNVPSQEKRKMPGVPNGNVCHIEQEPHGGHSGP------ELQRTGRLFGGLVLDIK----RKAPWYWSDYRDALSLQCLASFLFLYCACMSPVITFGGLLGEATEGRISAIESLFGASMTGIAYSLFAGQALTILGSTGPVLVFEKILFKFCKDYALSYLSLRACIGLWTAFLCIVLVATDASSLVCYITRFTEEAFA-----SLICIIFIY 607 HSP 2 Score: 244.202 bits (622), Expect = 1.275e-65 Identity = 180/632 (28.48%), Postives = 300/632 (47.47%), Query Frame = 2
Query: 2879 IGTREHILALCISGLVFTVFSGQXXXXXXXXXXXXXXDGLLYNVCSDYNIDFLSFRMLIGLWAVVFLAIFVAVNLSSYLKFFTRFSLEIFVIVPALVLLCYG---FVHMC--YMIQLYAALPGTFSNQTCLCVQSYREPLNMSIPINNYTLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRQQYRVKQKILHNIHF-----RDCIKKDMSLVGEAC-MHGVYP-----FTSILTVSSIVLFLFLTSFQHLGYLPKQVHQFFQNFAALIVVIALSASANQFNINIRYLSIPKSFAPNGIERTQWIVDPLVSNEAWIIVLAVIPAFILALMIFVEQQLSARQINNHYALLKKGHGYHLDLAVVCVGLFISSVFGLPFCVASIILSINNVYSLTTKSQADFIGCDTK---IKEQRLSNLLTYVLITLTPTMRPILRYIPFPVLYGLLIVALFKTFAGTQFSERFTLLFMPKEKQPDIRYLRQVPLISVNIFTLSQVVLTVLLCVARGTLAVMVFPIVTILLIVMRALMERILPMRDILALDEPLPS--FRCILRMCRKPRTELLKPESIEKGALLADESHEDVLPDINK------DLDRVNISEELSKTAAWKQLTFAENNS 4693
I E + ++G+ +++F+GQ L +L P+ +F+ +L+ C DY + +LS R IGLW + VA + SS + + TRF+ E F + ++ + +H+ Y I +++ L S C C P N NN+TL Q ++ + +H+ +C + +G AC HG Y ++ IL ++ +L L +F+ Y P +V +FA + + + + L +P F P +R WI++P+ N W ++ A+IPA + ++IF++QQ++A IN LKKG GYHLDL +V + L + S+ GLP+ VA+ +LSI +V SL +S+ G K I+EQR++ L+ +VL+ + M IL++IP PVLYG+ + + G QF +R L MP + QPD YLR VPL V++FTL Q+ VLL V + + A +VFP++ + L+ +R +M+ R++ LD+ +P + + +K + E + +E G +L K D +NIS+E+ KT WK L+ N+
Sbjct: 508 ISAIESLFGASMTGIAYSLFAGQALTILGSTGPVLVFEKILFKFCKDYALSYLSLRACIGLWTAFLCIVLVATDASSLVCYITRFTEEAFASLICIIFIYEAIEKLIHLAETYPIHMHSQL-DHLSLYYCRCTL----PENP----NNHTL-------------------------------------------QYWKDHNIVTAEVHWANLTVSECQEMHGEFMGSACGHHGPYTPDVLFWSCILFFTTFILSSTLKTFKTSRYFPTRVRSMVSDFAVFLTIFTMVIIDFLIGVPSPKLQVPSVFKPTRDDRG-WIINPIGPNPWWTVIAAIIPALLCTILIFMDQQITAVIINRKEHKLKKGCGYHLDLLMVAIMLGVCSIMGLPWFVAATVLSITHVNSLKLESECSAPGEQPKFLGIREQRVTGLMIFVLMGCSVFMTAILKFIPMPVLYGVFLYMGVSSLQGIQFFDRLKLFGMPAKHQPDFIYLRHVPLRKVHLFTLIQLTCLVLLWVIKASPAAIVFPMMVLALVFVRKVMDLCFSKRELSWLDDLMPESKKKKLDDAKKKAKEEEEAEKMLEIGGDKFPLESRKLLSSPGKNISCRCDPSEINISDEMPKTTVWKALSMNSGNA 1086 The following BLAST results are available for this feature:
BLAST of TCONS_00020518 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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