TCONS_00020636 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020636
Unique NameTCONS_00020636
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length516

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020636 ID=TCONS_00020636|Name=TCONS_00020636|organism=Clytia hemisphaerica|type=transcript|length=516bp
ttcataaattacgtcacgaacatcacttgccccgtattcaaacaattacc
atggtgattatgtcccttgagacattaaataattttttatgaataatagg
aagtagttttaataaaatccgctgggagttaattaccatggcaataattt
taaaacgaggcaagtgatgttcgtaacgtaatttatgaaaaggtcaatAA
CATCGCATTATAAATACAGTAACCTTTTCTTCACAGGCTAGTACGGATAG
TGGCTGGACTTGAGAAAGGGATCAAACGAGCCATTCGACGTAATCACATC
ACATCTGATATTTTCGATGCCACTGCTCTCAAACATCCAAATAAAATCGC
TGTCTGTTCATCAGATGACCTCGTCCAATACACTTTCACTGAACTCAAAA
ATCTTATAAACCAGATCGCTAATATCTTTTACGATCTCGGCTACCGTAAG
AATGATGTGGTCATTCTGTTCATGGAGAATCGTCCAGAATATGTGGCTTT
CTGGTTGGGGCTTTCC
Run BLAST on NCBI

transcript from alignment at sc0000359:258831..259346+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020636 ID=TCONS_00020636|Name=TCONS_00020636|organism=Clytia hemisphaerica|type=transcript|length=516bp|location=Sequence derived from alignment at sc0000359:258831..259346+ (Clytia hemisphaerica)
ttcataaattacgtcacgaacatcacttgccccgtattcaaacaattacc
atggtgattatgtcccttgagacattaaataattttttatgaataatagg
aagtagttttaataaaatccgctgggagttaattaccatggcaataattt
taaaacgaggcaagtgatgttcgtaacgtaatttatgaaaaggtcaatAA
CATCGCATTATAAATACAGTAACCTTTTCTTCACAGGCTAGTACGGATAG
TGGCTGGACTTGAGAAAGGGATCAAACGAGCCATTCGACGTAATCACATC
ACATCTGATATTTTCGATGCCACTGCTCTCAAACATCCAAATAAAATCGC
TGTCTGTTCATCAGATGACCTCGTCCAATACACTTTCACTGAACTCAAAA
ATCTTATAAACCAGATCGCTAATATCTTTTACGATCTCGGCTACCGTAAG
AATGATGTGGTCATTCTGTTCATGGAGAATCGTCCAGAATATGTGGCTTT
CTGGTTGGGGCTTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011575XLOC_011575Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020636-exon-sc0000359-1491911889:258831..259346TCONS_00020636-exon-sc0000359-1491911889:258831..259346Clytia hemisphaericaexon
TCONS_00020636-exon-sc0000359-1510915933:258831..259346TCONS_00020636-exon-sc0000359-1510915933:258831..259346Clytia hemisphaericaexon
TCONS_00020636-exon-sc0000359-1575043694:258831..259346TCONS_00020636-exon-sc0000359-1575043694:258831..259346Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000359supercontigsc0000359:258831..259346 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.237327	0.373968	0.523403	0.258373	0.97539	0	0.512636	0.472153	0	0.363911	0.0602628	0.334514	0.322495	0	0	0	0.390261	0	0	0	0.744738	0	0	1.06592	0.363752	0.221683	0.159892	0.356076	0	0.640271
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020636 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top