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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020642 ID=TCONS_00020642|Name=TCONS_00020642|organism=Clytia hemisphaerica|type=transcript|length=993bp
TTGAAAGTAGAAGCCCCAAAAAATAGAAGAGATCTAATCTagtctttttt
tatataatttcaaaacagaACATTAACATACCTGATCGGTATTGCAGTGC
TATCTATAAATTAGGTGCTAGCAAATATGACAGGTTCCAACGCCTCTAGA
AACAATTGGACACTTTATCGACATGTAGCCAGTAGCGAACCATGTGCTTT
CCACGTGAGATTCCCGCCATTTTCATAGGCAAGTGTGACTTTGAACACTG
ATAAAAAGTTCGTCTCTAATAGCAACGGATCAGCTAAACAGGATAGCtcc
aaaatgtaaacattccaaatCAAAGATGGCCACACACTACAGCGCAAATC
AGtaCGAAAATGCTTTTGCTGCCAATCGACTTCAAAACTATCAAGTCCCA
AATGACTTCAAAGAGCACCCAACAGCGCGAAAAGGTTGCACCAAAATCAT
CAGCAACAATCGTGGCCATCTTCTCGACAATGTTCCACGCTCTAAACAAT
CTCCCTGGGGAACTTTCAAGGGAACTTGGGATGATCACCTAGGGCTTCAA
AAGAACCCTGCTAAAGAGACTCCCTCAAAAGAAACCAGTAACCGATTAAA
ATCACCATCACCCGAACAAAATGAAAAGAGTGTAGTTGATGAAGAAGTTA
TACAGCCCACTCAACATAAGGAACAAATTGTGGAATGAAACTTTTTTCCC
TAATACAAAAACACtatcaatcaaatttatttaaatttttagatttttat
tttgttggtcCCTcttttttgcataaattatttttaaaacatttttgtaC
ATATTGctctatttttttgatttttaatttactGTGACATGCAGTATAGG
CTATAATAAATACAAATGAACTGAAAAAAACTGATTTGACCGTAATTCGA
TCATTCAGTGAGCATTGGTTCTGACATGCTTACGCTACTTTGAGAACCAC
GGCGCTTTTATCATAACAGTACTGTTTGTTGTGACAAaaggaa Run BLAST on NCBI transcript from alignment at sc0000359:46857..48606- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020642 ID=TCONS_00020642|Name=TCONS_00020642|organism=Clytia hemisphaerica|type=transcript|length=1750bp|location=Sequence derived from alignment at sc0000359:46857..48606- (Clytia hemisphaerica)
TTGAAAGTAGAAGCCCCAAAAAATAGAAGAGATCTAATCTAGTCTTTTTT
TATATAATTTCAAAACAGAACATTAACATACCTGATCGGTATTGCAGTGC
TATCTATAAATTAGGTGCTAGCAAAATGACAGGTTNATCGGTATTGCAGT
ACTATCTATAAATTAGGTGCTAGCAAATATGACAGGTTCCAACGCCTCTA
GAAACAATTGGACACTTTATCGACATGTAGCCAGTAGCGAACCATGTGCT
TTCCACGTGAGATTCCCGCCATTTTCATAGGCAAGTGTGACTTTGAACAC
TGATAAAAAGTTCGTCTCTAATAGCAACGGATCAGCTAAACAGGATAGCT
CCAAAATGTAAACATTCCAAATCAAAGATGGCCACACACTACAGCGCAAA
TCAGGTGACTTTTTTTGCTTGGAAAATTATCTGAGAGTAGAGAAATGTTT
TCTTGAACAAACTGAAGAAATTAATTGAAGGTTTCTGACAATGTTAGCTG
AATTGAAGTTGTATTTGATATTATCTTACTAATTGGTATACAACATCACG
AGATGTAAAATATTGGACGTCTACCTTTCGAAAAAATTAGCTAATTTTAT
GCCAGAAAGAAAGCACTTTACACCCTTTCAGTGTAGCGTCGCCTGCCTCA
ATTGTTCTTTTTCACCATATCTTTTTATCAAGCCATGTACTGTAATCCCC
TTGTAATAATATTATCCCTACAAAATTTTATCAGATCTTGAATATTTATA
TTTTTAAATTTTTGTTTTATTTTAGTACGAAAATGCTTTTGCTGCCAATC
GACTTCAAAACTATCAAGTCCCAAATGACTTCAAAGAGGTATTATTTTAC
GCAATATCTTGCATTCACGTGTACCCATATACAAAAGTATGTGGCATGAC
TTGACTTTCTTAAATTCGAACTATATACTTTAGTACCTTTGTTAACCCCT
GCTGTGGTGAAGATAACCCGTCCCTTTTTCCCTTCCCTTATTCCCTTCTC
ATCTAATTTCTACGTACACAGCCCCACCAATATCCGCTTTGATTATTTTA
TTAACCACAAATACAGTCCATTGATTTGAAATTATGATTTTAAGATTAAT
AGCTTTTGATAAAAAGGCTCTGAAACAATTTTGTATTTAAATCTAGTAAA
ATATTTTTACTCGTATTTCTAGCACCCAACAGCGCGAAAAGGTTGCACCA
AAATCATCAGCAACAATCGTGGCCATCTTCTCGACAATGTTCCACGCTCT
AAACAATCTCCCTGGGGAACTTTCAAGGGAACTTGGGATGATCACCTAGG
GCTTCAAAAGAACCCTGCTAAAGAGACTCCCTCAAAAGAAACCAGTAACC
GATTAAAATCACCATCACCCGAACAAAATGAAAAGAGTGTAGTTGATGAA
GAAGTTATACAGCCCACTCAACATAAGGAACAAATTGTGGAATGAAACTT
TTTTCCCTAATACAAAAACACTATCAATCAAATTTATTTAAATTTTTAGA
TTTTTATTTTGTTGGTCCCTCTTTTTTGCATAAATTATTTTTAAAACATT
TTTGTACATATTGCTCTATTTTTTTGATTTTTAATTTACTGTGACATGCA
GTATAGGCTATAATAAATACAAATGAACTGAAAAAAACTGATTTGACCGT
AATTCGATCATTCAGTGAGCATTGGTTCTGACATGCTTACGCTACTTTGA
GAACCACGGCGCTTTTATCATAACAGTACTGTTTGTTGTGACAAAAGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020642-exon-sc0000359-1575043694:48493..48606 | TCONS_00020642-exon-sc0000359-1575043694:48493..48606 | Clytia hemisphaerica | exon |
| TCONS_00020642-exon-sc0000359-1575043694:48203..48440 | TCONS_00020642-exon-sc0000359-1575043694:48203..48440 | Clytia hemisphaerica | exon |
| TCONS_00020642-exon-sc0000359-1575043694:47769..47831 | TCONS_00020642-exon-sc0000359-1575043694:47769..47831 | Clytia hemisphaerica | exon |
| TCONS_00020642-exon-sc0000359-1575043694:46857..47434 | TCONS_00020642-exon-sc0000359-1575043694:46857..47434 | Clytia hemisphaerica | exon |
| TCONS_00020642-exon-sc0000359-1510915933:48493..48606 | TCONS_00020642-exon-sc0000359-1510915933:48493..48606 | Clytia hemisphaerica | exon |
| TCONS_00020642-exon-sc0000359-1510915933:48203..48440 | TCONS_00020642-exon-sc0000359-1510915933:48203..48440 | Clytia hemisphaerica | exon |
| TCONS_00020642-exon-sc0000359-1510915933:47769..47831 | TCONS_00020642-exon-sc0000359-1510915933:47769..47831 | Clytia hemisphaerica | exon |
| TCONS_00020642-exon-sc0000359-1510915933:46857..47434 | TCONS_00020642-exon-sc0000359-1510915933:46857..47434 | Clytia hemisphaerica | exon |
| TCONS_00020642-exon-sc0000359-1491911889:48493..48606 | TCONS_00020642-exon-sc0000359-1491911889:48493..48606 | Clytia hemisphaerica | exon |
| TCONS_00020642-exon-sc0000359-1491911889:48203..48440 | TCONS_00020642-exon-sc0000359-1491911889:48203..48440 | Clytia hemisphaerica | exon |
| TCONS_00020642-exon-sc0000359-1491911889:47769..47831 | TCONS_00020642-exon-sc0000359-1491911889:47769..47831 | Clytia hemisphaerica | exon |
| TCONS_00020642-exon-sc0000359-1491911889:46857..47434 | TCONS_00020642-exon-sc0000359-1491911889:46857..47434 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000359 | supercontig | sc0000359:46857..48606 - |
Blast
BLAST of TCONS_00020642 vs. Swiss-Prot (Human)
Match: FLTOP (Protein Flattop OS=Homo sapiens GN=CFAP126 PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 6.886e-21 Identity = 44/88 (50.00%), Postives = 62/88 (70.45%), Query Frame = 2
Query: 326 MATHYSANQYENAFAANRLQNYQVPNDFKEHPTARKGCTKIISNNRGHLLDNVPRSKQSPWGTFKGTWDDHLGLQKNPAKETPSKETS 589
MAT+YSANQYE AF++ LQN+ KE ++ +G T+II+N+RGHLL +VPRSK +PWG+F GTW + L+ PA+ T + T+
Sbjct: 1 MATNYSANQYEKAFSSKYLQNWSPTKPTKESISSHEGYTQIIANDRGHLLPSVPRSKANPWGSFMGTW--QMPLKIPPARVTLTSRTT 86
The following BLAST results are available for this feature:
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