TCONS_00020667 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020667
Unique NameTCONS_00020667
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1762

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020667 ID=TCONS_00020667|Name=TCONS_00020667|organism=Clytia hemisphaerica|type=transcript|length=1762bp
TCTATATAGAAAACATGTCAGAGGGAATGCGTGCAGGCTAGACCCACTac
tgtacatgttttttttcgcAGGTGATGCTGATGTGCACGAAAACGCACAA
GGTGCGATTTGTCTTAAACTATTTCCCGGCCATATTCATCATTGCAGCAT
GCTGTATTTACTGCTACAAAATCCGTGGGCTACCTAAAACGTACAATGAA
ACGAAATTCTACATCTTCACTGCATTTTGCAGCTTCACACTTCTACttAC
CTTCATGGTCACATTTCAGTTGATCGAAGAATCAGACAACTATTACCATG
ACATGGCCAACGCAATCTATAACGTCTTGATTGCGTACCTAATCATTCTT
ACACTCTTCGTACCACGCCTCATGTATTTGCGACACGGCGACGTGCCCCC
GTTCACGGCCAATTCCTTCTTGCGTGATCGTTCCGTGTCCGGAGGCTCCC
GTGACCGCGCGTACTCGTTCCAACGTAATCGAACGCCGTCTAATAACGAC
TACGCTAACGAGAATGTCAACATGGTCAATCATCGCGATTAGTAGCGGTA
CTGGCACCACCATTCACCGACATCGTCCTATCATTTTCGCCATGACTCTG
AACATTTCGTCCAAGCTCAGAGTTTTTTATACTTGTGCTTCATAAGCGTG
GTTATACCTTTGATTCGGCAATCCTCTCAGAAGGTGGCTTCCTGCGTTAT
TTGAACGTCAAACATTAAATGGACGACGTTTTGCCGTTTTGTGTCGGTGT
GCTTACATTTGTCAGTATCGAAcaaagtttgcttgttttaaaGTTGACGT
TTCTAGCCGAGATTTGGACGACTTTTTGTTGTAGTTTTTAAAGAATGTAA
ATAATATCACATACTGGTTATAAAAAGCTCTTATATATTAGCGATATATT
ATTATACTTAGTTATTTAGAGTAGGGATAGCCTGGTGAACACCAGTTCAG
TTTGATGTCTGAACTGTTAAGTACTTTCAAATGGGTTTGTTTGAACGAAT
AATAGTAAGGGGCAGAAATTGTAAAATATCAATCTAGGTTTTTTTTTGAT
ACAATAACGTACCTAGTTTGCGGTTTTGCTCTTCTGTAAAGGTGTTTCGC
TTTGTCTGTaaatatgtaaaatattttaggcCATATTTTTTTCTGTTCGA
ACTTTCTTTTTGTTGTGTTGAGTTTTTTGTTAACTTGGGTCAAGTATCCA
TACTAATATACGGGTGGGAGGTCTCGCTAAAAGAATCTAATTTTAGTTTC
TCAAAGGGTTTTAGAAATATGCAAAATTCCCGATATTTGCGCCTCAAAAG
GTTAAATTTCGTGAAGAAGTGTCGATAAAAGAAGAGTCACAAAATgccaa
actttttaaatttttcctcGATCTTTACCAAATAAtatccgattttcgaa
aattttgtcgGCACTCACCCGTCATCTGATAAGCCTGGAACACATTTCCT
TATTTTACTCTGTGACCCTTTTAATTCACTCACTATGGGGTTATATTGAT
CAAATGGATGGCCTAGGTTTTCAAGTGTTAGTATTTTGTTAGCTTCAATT
AGAACTTTTTAAACTCCTTTTCGGCGAAAATTGATGAaatcgtttttgtt
tttttcttcattcttttAAAGTGccaaattcaaatttcatcaGTTGAAGA
TAAAGTAAAAAAGGTCAAGTTTGGGTTCGTCGAAAGCTATTTTCACCAGA
CTATAAAATTAGGTCATTGATCAAATTTACAGCAACcgtaagaaatttca
aaaagcataaGC
Run BLAST on NCBI

protein sequence of TCONS_00020667-protein

>TCONS_00020667-protein ID=TCONS_00020667-protein|Name=TCONS_00020667-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
MLMCTKTHKVRFVLNYFPAIFIIAACCIYCYKIRGLPKTYNETKFYIFTA
FCSFTLLLTFMVTFQLIEESDNYYHDMANAIYNVLIAYLIILTLFVPRLM
YLRHGDVPPFTANSFLRDRSVSGGSRDRAYSFQRNRTPSNNDYANENVNM
VNHRD
Run BLAST on NCBI

transcript from alignment at sc0000363:8..3586+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020667 ID=TCONS_00020667|Name=TCONS_00020667|organism=Clytia hemisphaerica|type=transcript|length=3579bp|location=Sequence derived from alignment at sc0000363:8..3586+ (Clytia hemisphaerica)
TCTATATAGAAAACATGTCAGAGGGAATGCGTGCAGGCTAGACCCACTac
tgtacatgttttttttcgcAGGTGATGCTGATGTGCACGAAAACGCACAA
GGTGCGATTTGTCTTAAACTATTTCCCGGCCATATTCATCATTGCAGCAT
GCTGTATTTACTGCTACAAAATCCGTGGGCTACCTAAAACGTACAATGAA
ACGAAATTCTACATCTTCACTGCATTTTGCAGCTTCACACTTCTACGTAA
GATTCTATTATTATGATATTTCTTATCGTTCTTCTTCAAGCATATTTTAG
TTGAAAATCGGCTAGAAAAAGGCCAGAAAAGCTACAGATGTCTAACATTT
CGCGATGATAAGCTAATGTTTGACTTATTGTTTGAGTGTATGGGGAGGAA
CTGAATTCAATGTGTGGTGGATACCAGGGTATTTTTCAGGCACTTTTTAC
CACCGACTTTCAAGGAAAATCTCATATCAAATTGAgttttaaaagtcaat
tttgcgaagaaaaaaatgtgaaaaattataTAACGCAAAGTCTAGAAACG
ACGGTACAAAAACTTCCAGGAAAATCAAGATGCTGTATTGCAATGAGTCT
AACAACAAGTAGCGAGATTGTTCAAGTTAGGATTTTTAGGCTATTAAAGA
TGAATGAAATCACCTATTTAGGGCGGTTAGAGGGCaatgatttttggacc
tacctccgggtaccccggtggaggtcctttaaattaagccggaaaaatta
tttttttcgcatcttcttgagattttatcattagtttttgcttatttatt
gctcaaagatgcgtattaataatgccaaaacatggccgagtccgattttt
gagaaacatttttttccggcggaaatgtgccggaaatcgccgtttttctg
ggttttcattggactttttccttataattggttgttttttcattcaaaaa
cactATTAAtaccaccatcaagcatgttttaattttcaataaaattgttt
ttttgaagctggaactatttaaaaatcgtcggaacaacctattttcgccg
gaaagacagtatttcttgaatttctcgagctgtactttatatttttttgt
gaaattttgcacactgatgcaaaatgacaatacctaaaatgtgacggagc
ccgatttaaaaaaagaaatttgccggaaaaatcggttttttgacattttc
tttaattttcatcattagattttctgatttttttgcagaaagatgcgtat
tcgcaatgcttaaaacatggccgagttcgatttttgagaaaaatcttttt
ccggttgaaaatgccggaaatcgccgtttttgtagattttcattggattt
tttccttatatttctatgtttttcgcacaaaaacattattgataacaatg
ttcaccatcaagcatgattcaattgtcaataaaactgatttttgcgacta
gaactttctatttattcttTCCCTACAAGCCTTCCTTCtctccccatcaa
caatcaatgatgaatttattgcgttatgcatttttgctaaacgctatatt
tttgactgatttttttcatttttctcctcgcattgctatctaatattcat
cattaggtaggtccactcagcatctagcttgttaccACTGCATTGAAACT
CAATTTTTCCGACCGGAACGGTGGTGAGGAAAAAGTGCCTGGAAAAAACA
TCTGGATACGCTTAGcattcactgacctttatatatccctggaccaagtt
atatCCGCGgagtttgtttttgaattggtacccgagtattcgaggaaaag
tagatctagcgctcttgatgcattttcaccgctaattgagtagtgccgcc
attagggtactaTTTCCAAAAGAACTCCGATCAACGATTTTTGGTTGGCT
gggattgagtaacttggtccaggggtATATAAAGGACACCCAGCTGGCAC
AGAACGTTCTTtgaacgtttatctaacgttcacaacgcccatataacgtt
agatgaacgttaaaacaacgttgtgtgccagctgggactgACCTTacgtt
ttatcttttttagttACCTTCATGGTCACATTTCAGTTGATCGAAGAATC
AGACAACTATTACCATGACATGGCCAACGCAATCTATAACGTCTTGATTG
CGTACCTAATCATTCTTACACTCTTCGTACCACGCCTCATGTATTTGCGA
CACGGCGACGTGCCCCCGTTCACGGCCAATTCCTTCTTGCGTGATCGTTC
CGTGTCCGGAGGCTCCCGTGACCGCGCGTACTCGTTCCAACGTAATCGAA
CGCCGTCTAATAACGACTACGCTAACGAGAATGTCAACATGGTCAATCAT
CGCGATTAGTAGCGGTACTGGCACCACCATTCACCGACATCGTCCTATCA
TTTTCGCCATGACTCTGAACATTTCGTCCAAGCTCAGAGTTTTTTATACT
TGTGCTTCATAAGCGTGGTTATACCTTTGATTCGGCAATCCTCTCAGAAG
GTGGCTTCCTGCGTTATTTGAACGTCAAACATTAAATGGACGACGTTTTG
CCGTTTTGTGTCGGTGTGCTTACATTTGTCAGTATCGAAcaaagtttgct
tgttttaaaGTTGACGTTTCTAGCCGAGATTTGGACGACTTTTTGTTGTA
GTTTTTAAAGAATGTAAATAATATCACATACTGGTTATAAAAAGCTCTTA
TATATTAGCGATATATTATTATACTTAGTTATTTAGAGTAGGGATAGCCT
GGTGAACACCAGTTCAGTTTGATGTCTGAACTGTTAAGTACTTTCAAATG
GGTTTGTTTGAACGAATAATAGTAAGGGGCAGAAATTGTAAAATATCAAT
CTAGGTTTTTTTTTGATACAATAACGTACCTAGTTTGCGGTTTTGCTCTT
CTGTAAAGGTGTTTCGCTTTGTCTGTaaatatgtaaaatattttaggcCA
TATTTTTTTCTGTTCGAACTTTCTTTTTGTTGTGTTGAGTTTTTTGTTAA
CTTGGGTCAAGTATCCATACTAATATACGGGTGGGAGGTCTCGCTAAAAG
AATCTAATTTTAGTTTCTCAAAGGGTTTTAGAAATATGCAAAATTCCCGA
TATTTGCGCCTCAAAAGGTTAAATTTCGTGAAGAAGTGTCGATAAAAGAA
GAGTCACAAAATgccaaactttttaaatttttcctcGATCTTTACCAAAT
AAtatccgattttcgaaaattttgtcgGCACTCACCCGTCATCTGATAAG
CCTGGAACACATTTCCTTATTTTACTCTGTGACCCTTTTAATTCACTCAC
TATGGGGTTATATTGATCAAATGGATGGCCTAGGTTTTCAAGTGTTAGTA
TTTTGTTAGCTTCAATTAGAACTTTTTAAACTCCTTTTCGGCGAAAATTG
ATGAaatcgtttttgtttttttcttcattcttttAAAGTGccaaattcaa
atttcatcaGTTGAAGATAAAGTAAAAAAGGTCAAGTTTGGGTTCGTCGA
AAGCTATTTTCACCAGACTATAAAATTAGGTCATTGATCAAATTTACAGC
AACcgtaagaaatttcaaaaagcataaGC

Coding sequence (CDS) from alignment at sc0000363:8..3586+

>TCONS_00020667 ID=TCONS_00020667|Name=TCONS_00020667|organism=Clytia hemisphaerica|type=CDS|length=936bp|location=Sequence derived from alignment at sc0000363:8..3586+ (Clytia hemisphaerica)
ATGCTGATGTGCACGAAAACGCACAAGGTGCGATTTGTCTTAAACTATTT
CCCGGCCATATTCATCATTGCAGCATGCTGTATTTACTGCTACAAAATCC
GTGGGCTACCTAAAACGTACAATGAAACGAAATTCTACATCTTCACTGCA
TTTTGCAGCTTCACACTTCTACttACCTTCATGGTCACATTTCAGTTGAT
CGAAGAATCAGACAACTATTACCATGACATGGCCAACGCAATCTATAACG
TCTTGATTGCGTACCTAATCATTCTTACACTCTTCGTACCACGCCTCATG
TATTTGCGACACGGCGACGTGCCCCCGTTCACGGCCAATTCCTTCTTGCG
TGATCGTTCCGTGTCCGGAGGCTCCCGTGACCGCGCGTACTCGTTCCAAC
GTAATCGAACGCCGTCTAATAACGACTACGCTAACGAGAATGTCAACATG
GTCAATCATCGCGATTAGATGCTGATGTGCACGAAAACGCACAAGGTGCG
ATTTGTCTTAAACTATTTCCCGGCCATATTCATCATTGCAGCATGCTGTA
TTTACTGCTACAAAATCCGTGGGCTACCTAAAACGTACAATGAAACGAAA
TTCTACATCTTCACTGCATTTTGCAGCTTCACACTTCTACttACCTTCAT
GGTCACATTTCAGTTGATCGAAGAATCAGACAACTATTACCATGACATGG
CCAACGCAATCTATAACGTCTTGATTGCGTACCTAATCATTCTTACACTC
TTCGTACCACGCCTCATGTATTTGCGACACGGCGACGTGCCCCCGTTCAC
GGCCAATTCCTTCTTGCGTGATCGTTCCGTGTCCGGAGGCTCCCGTGACC
GCGCGTACTCGTTCCAACGTAATCGAACGCCGTCTAATAACGACTACGCT
AACGAGAATGTCAACATGGTCAATCATCGCGATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011596XLOC_011596Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020667-proteinTCONS_00020667-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020667-exon-sc0000363-1491911889:8..253TCONS_00020667-exon-sc0000363-1491911889:8..253Clytia hemisphaericaexon
TCONS_00020667-exon-sc0000363-1510915933:8..253TCONS_00020667-exon-sc0000363-1510915933:8..253Clytia hemisphaericaexon
TCONS_00020667-exon-sc0000363-1575043694:8..253TCONS_00020667-exon-sc0000363-1575043694:8..253Clytia hemisphaericaexon
TCONS_00020667-exon-sc0000363-1491911889:2071..3586TCONS_00020667-exon-sc0000363-1491911889:2071..3586Clytia hemisphaericaexon
TCONS_00020667-exon-sc0000363-1510915933:2071..3586TCONS_00020667-exon-sc0000363-1510915933:2071..3586Clytia hemisphaericaexon
TCONS_00020667-exon-sc0000363-1575043694:2071..3586TCONS_00020667-exon-sc0000363-1575043694:2071..3586Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000363supercontigsc0000363:8..3586 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.7545	2.89253	0.775977	0.784478	0.123229	0.17041	2.91038	3.21774	5.612	3.6572	8.00656	6.55103	6.04976	5.78614	14.1775	16.7243	6.08876	8.1329	3.22265	2.89824	8.20657	8.48084	10.397	10.9971	7.54014	10.1762	0.751789	0.735469	4.35024	5.36062
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017978GPCR_3_C
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020667 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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