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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020733 ID=TCONS_00020733|Name=TCONS_00020733|organism=Clytia hemisphaerica|type=transcript|length=2203bp
AGGAAAgtaaacaataataaaaaaatcaaaatggcgtcCTGATCCGGCTG
TCAAAAAAGGtcatttctttttatattttatgtattttgtcacgtatttt
gtattgaaaattttgacatttgaatAGAGAAATGACAAGCTGTTAGATGC
ACGATGGCTCTGAATTTAAGTATTTCGCTTTGTCCTTGACCTCCATTTTT
GGTTATactgacaaaagaaaagaaacaatcATAACCAGATAATATCATCA
TGGCAGCAGAACTTCTAtggattttcaacattttcatcaCCACGATTTCA
ATTACCATAGCCCATAAAGGGACAGTGAATTTCCTGGTACACTcatttaa
aaatgattcaaaGACCAATCAAGTATATGATACAGCAATAATGAATATGG
AACAATCAAATTCCAACATTGAGTTCCAGTTTCGTAGAGCTGATGACTCA
TTTTTCTCTTGGacagttttttttgaaaagCTTATTATGATGGAAATCAG
ATAAGCCaattaaaattgattgaaaGACTTTCTGAATCGGTTCCATTCGA
GTACGTTTTCAAGGAAATCAAAGCCCTAGAAACCAAAATATGGATAATGG
ACCAAGTAATACATCCACATGAAATAGATAAATCTATCGCTCAAAAATGT
CAAGGCTCTGATCTCATACTATCAAACAAAGAACAAATCCGTCAAATTGC
AGACTTCTCAAATTTGTTCAATGGAAAAGATCAGACGTTCCGTTTCCAAT
CATTGCCAATCAACCAATATCCGTTTTGTCTGTCATCGTCAGCCAGTGAT
TTGCAAATCAGATGTAAATGTCAGGCTATCCTAAACATAGGTTGGTATCC
TTGTGGTGAGAGATCGTGTGATAATGGCGAAGATAAACTCACATGCAACA
TGTTTTATTGCCAACGGACACATAAGTTTATTTATCTGGTAGATAAGTGG
CAAGATTGTTTGAATACTACCCTATGATAAAGCTATCTTGGTTGATAATC
TCATTATTGTCCACAATACTTTTCTCTGATAATGTTTTCACTCCTTGCTA
ATAAAATGTGATTCGATTTGAATTTCTTGGTCATGAAATAGTGCTTTTGA
AAGACACTATGAAGTGAATTAAGTTAAAAAGGCTCGATAGTTAAATCCGC
AAAAAAATGCTGAAAGCTGGGATTTGTTAAAGTTTATTATTACGCAAAAG
AAATTTCCTTTCAGTGACATACAACCTTCTGATACATTTTCTGCATGCTG
GTGGATAAGTAGTTATgttaaagaaatctttttttacctccttttcacaa
aaaaattgtgaaaatctaggatgaaaacaaaataaaagtagCAAAATTTC
GACATTTTGTTCCAGCGGAGTTTTCGAAAGCTTGATTCGTGGCAGCTCCA
TACCCTTTGATGTCACGTTAAAGTGAAATACCTTGCAGCCAACTTGGCTA
GGTCTTATCGTCCTTTTTCAGTTTACTTCACATGTGTGCCAGCGTTTAAG
TGACCcaataaaagactttaagataATAATTAAGCGAATGTCAGAAATAG
TTAAACAAAATTCTATTATTATAGTCAAGGGGGGATTAGGAGTGTCTGCC
TCTAGCTAAATGTGCTTACAGACCAAGAGTAGAcatgcttttataagaac
ataccaTCATAAGAATAGAGGGTTTCGATGACcaatatgttaagaacaaa
ttcagaacattttaaggctttactgACTCTATAAGACtcgattttcaaga
aaatggaccaaagtactcacaaaatagtgaaaataataacatgctaaaac
tcaaaaagttaagatccAAATATTCCAAacaatttttggatgttcttatt
aaaaaaaacctgtaaAGTCTTAAAAACATGGAGCTGGCTACTGTGCAGAC
TATGAAATACCACAATCTTCTCAGACTTTGTACATAAACAATTTGATATT
GACATATATACCATTtttagcatatttattttttgatgttataagtttag
ttttagtttatttataTACCATGTTATTTTATTATGTTAGAGTATTTATC
CACCGATTATTTTGTATTCTTACATTTATATTGCTTTTTATAtatgcaag
caaaatattttatattttactgtagcaaagaaatcattgaaaatttttga
tcttCAAATTGTATCAGCCTCAGGCCTGTTATTTTCCTGTCGcgcgtttt
tat Run BLAST on NCBI transcript from alignment at sc0000365:163870..171134- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020733 ID=TCONS_00020733|Name=TCONS_00020733|organism=Clytia hemisphaerica|type=transcript|length=7265bp|location=Sequence derived from alignment at sc0000365:163870..171134- (Clytia hemisphaerica)
AGGAAAGTAAACAATAATAAAAAAATCAAAATGGCGTCCTGATCCGGCTG
TCAAAAAAGGTCATTTCTTTTTATATTTTATGTATTTTGTCACGTATTTT
GTATTGAAAATTTTGACATTTGAATAGAGAAATGACAAGCTGTTAGATGC
ACGATGGCTCTGAATTTAAGTATTTCGCTTTGTCCTTGACCTCCATTTTT
GGTTATACTGACAAAAGAAAAGAAACAATCATAACCAGATAATATCATCA
TGGCAGCAGAACTTCTATGGATTTTCAACATTTTCATCACCACGATTTCA
ATTACCATAGCCCATAAAGGGACAGTGAATTTCCTGGTACACTCATTTAA
AAATGATTCAAAGACCAATCAAGTATATGATACAGCAATAATGAATATGG
AACAATCAAATTCCAACATTGAGTTCCAGTTTCGTAGAGCTGATGACTCA
TTTTTCTCTTGGACAGTTTTTTTTGAAAAGGTATAATATCCTTATCTATA
AAAATTAGATCATGTTTCAATGAAAAATGTGTAGGTAATATTTTTTAATT
AGGCAAATGGCAGTCAGGGATCCTTGCAACCAGTCATTTGTTTGAATAAC
TAATTCTTCTATTTCTATTTGGTTGAGTTGCAGGAGGCTTTAGAGGCCTA
TTCTCGCAACTATAGACGCTTACTAATGAGCGTCCCGTCAGCACCTTGAA
CTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCGCCTGCACAGAAGCCAAGGTCGACTACCACTAT
ACTACGGCACCTCCTTTAAATTACTCCAGCAGAATCTTTTTTAAATATAA
CATCATACAGTATAATTAATTTGTCTTTTACAGCAGATCTGTTATCTAAG
TATATACAAGGTAGTTTATTCTGTTTTTAATGGCTGGAGTAATCTGCTAA
ATAGACTGTCGTGTTCTCCCAAACAACTATTCATTATATGGTAGCGACTC
CAGAAGTCACGCAACTGTCGTTGACGTCAAACCAAATGTTTCATATTTCC
GTGAACTTTGAACCCTTCTAATTGTTTTAGTATGTATGCTAAAGCGTTCC
GGTTTTTACTAAAAGAAGGCCCGTGATCTTAGCTTTCCAGCGGTATATAA
CACTGTGGACTCGGGCTAGACGGCAAATTGGTAAATGTTTACCCTAAGGG
GCCATTCAAAAAGTACTTTCGTCCAAATTTCCCTATTTTCAGACCCCCCC
CCCCCCTTGTTTGTCAGCATTTGTTTGAAGTCCCCCCCCCCCCTTTGTAC
GTTCGTTTTTATCTCAAAATTTTTACCCCCCCCCCACTTTTTCCTTTTAA
GATAATTGAAGAATTTAGACAAGGCAAGTTCAAAGAATATGATTTTAGCG
TTATTCTTTAATCTTATCGCACCTTAACTTTTTGCTCTCTAATTGTCTAA
TAATTGCTAAACAATTATAACATACACAATTGTTTAGGGGATTAACAATT
ATCTTTGGTTATGGATTCAAAGAAAAAATGTAATTAGGAGATAGATAGCA
AAAGATTTTTCATAGACTAAGTTAAAAGTCACGCTTGTGACAAGCACCCC
TCTCCCGCAAAAGCAAACGTACACAGATCGACTTGACACCCCTCCCCCCC
CCGTTCGTTTTCGTTTGCTTTTTTGCTGACCCCCTCTCCCCCCGTTCGTT
TTCGTTCGCTTTTTTGCTGACCCCCTCCCCCCCCTCGGCGACGAACGTAC
TTTTAGAATGGCCCCTAACTCGAGATATGCCTTTTTGAAGTAGGAGCCAA
AGTTGAGGTTAACATGGCCTGAGGTTGACACTGTTAAGGTTCTTTGACAC
CTTGTCATTTGACTTTTGAATTAGATTTTGAATATGTTATAGCCCTGAAA
TTATCTCAAAGGGTTGAAAATTGCTCTGAAGGGTGTTATTTGAGGTTGAC
ATTTATTAAAGGGCTCCAAAAATGAGGTTGACATTAGTTTAGTGCATAAT
TTTGATAAAGGTAGATCAATATGATGACTTTGGCTTACAAAATATCATTA
TTGACCATCTAAGAATCTTTTTCCAAGGAAATATCTGTTATTTGAGCAAG
TTTTGAGGTTGACAATGCAACGTTTATTTCAATGCAAGGTAAAGTGCCTT
ATGACGGAAACAGCCAGAAGCTCTTTTAAAATAATTTGTAAACCTCAATT
ATATTTGTTTTTAAGACAGAAAGACTATGGAATTGGATTCAAATGGTTAT
TGAAGCGTTTTTTTTAGGTTGACACCCCAAAAAGCCTTTTCTGCCCAATT
TTGACTCAATACAGTCTTTTCCGGCTTGTCAACCTCAAAAACAGCTCATT
TGATGGGTTTTGTTTGAAAATCTATCTTTGCTTAGCATTTTTGCCTTACT
TAGAACATATTGTAATGTTCTAAGTCCAAATGTTGAGGTTTACATTGCAT
TTTAATAACACCGATTTTGTCAACCTCAAATTAGGTAATATAACAGGAAA
TCTTGGCTCTTTTAACACTTTTTGTCTTGTATAACTATCCAGGGGTCTAT
TCTCACCAATTTTTACATTTCCTTTTTAGTTCCCTTTTCTGAGGATGACA
TTTCCTTGAAATGGTCATTTTTGGCCTGTCAATCTCAAACTGGCTCGAAT
TTAAGGGAAATACCTATATCTATGACTTTGTCTTCATTAGCTCTATCACC
TCCTGAAATCTTATTTCAGGATACCAAGTTTTGAGAAAGATATTGACAAA
ATTCTAAATTTGGTGTTTTTTTTCAAGAATTAAAAATGTCACACTATTTT
TGACCAGCTTCCCAAACGTTTTTGCAACATTTTTGAATTGTCTTCCGACG
GGAGAAAAAGAATTTGCAACTATCGATGAACAAATGTTTCTGGAAATGTA
GGAAATTGTTGTTGAAGGCTGAAACTTTGTATGTTTATCAGAAAAAGGGT
GAGGAATTCAAAAATCACATTCGCTAATTTTAGTTCTTTCATTTTCATGT
AGTTTTTTTTCACTTTTTGCTTCTTTAGCATGGGAATGCGCCAAAAAAAG
TTTATATTTTCTTTTCATTTAGGGTTTCTCCTTTCAGAAAAACTTATTCT
TTACTTATAACTTTTTGTTCCTCCATTTCCAGAGGCCCCTTGAAAATGGA
TCATATATACCACCTTTTTTTACTCATTTCAACCTTTTCCAAGCTACTTT
TCTTCAAAAACAAAATAAAACAATGCAATGTCTTCTTTTTGCAAAAAAAG
ATATATCTTTCGTTATTTTCATAAATATACTAAATATTTTACAAATATTT
TTATATAATAATATTCTAACACCATCAAAGAATTTTCCCTCCAAATTTCA
GGTCTCTAGCTACACTAGAAAAAGAGGTATGCAAAATTAAAGAAGCATGA
CTGGGAAATATTTTTTTTTTCTTTTTTGACACATTTTTCGAATTTTTCCA
AGCCATTTTCCTAACCTTTTTTTGGACATTTTTAGTCAAATCTTTGACAC
TAAAATTTGAATATCTTTACAACCACTTAATCCTCTGGAGGCCTATTACC
CCTCATTTTCTTTCTTTTTCAAAGAAGGTTGTTAGTGGCTGCACAGTTGC
CAATATACAATGAGTAGAAAAAAAAGTTACCTTTTTACCCTGTGTTGTTC
TATTGGGTAAATAGATAAGATTTTACTTGCAGAAAATTAGCTTGATAAAA
TTTTCCTTGAGTCATTTTTTTCATTACAGAGTTGAGTATCATTTCACAAA
ATAAATGCAGTTGTCGTTTCAATTCTTATTTTGCTATTTTTTAATTTTAG
TCAAATTAGCATGTTTTGCCCGAGCCATCCTATCCTGTTCTTAATGCATT
ATTAAACCTAGTTTTAATCCTATTCTTACTTTATTGTAGGATATTCAAAT
TTTCAATAGCATCAATCTTGGGGAAAGTGAATTAAACGAACAAAGCCACA
GATTTATTTGCTTTTTAGCTTATTATGATGGAAATCAGATAAGCCAATTA
AAATTGATTGAAAGACTTTCTGAATCGGTAAGTTGATTTCATTAACTGTC
TCTGTGTCTTTTTACAAAGCCTTTTGAATGGAATATCTTTGTTTTGCTTG
TTGTTTGTGCTTTTGGAATATGAGGGGCTGTGGCTCCACTTTGAAAGTGA
CAGGGCTATGATAAACTGACGAAGGAGGAATTTTTTAATTTTAGCCCTTC
TAGATCGCACAGGTTTGTTTTAACGTTATTAAACAAAGTTTTTGCCCCCC
CCCCTGGTGCTGCAGTGCCTGAATATGCATTTCATTTTATTCTTTAAAAG
GTTCCATTCGAGTACGTTTTCAAGGAAATCAAAGCCCTAGAAACCAAAAT
ATGGATAATGGACCAAGTAATACATCCACATGAAATAGATAAATCTATCG
CTCAAAAATGTCAAGGCTCTGATCTCATACTATCAAACAAAGAACAAATC
CGTCAAATTGCAGGTAATTTGTCAAATCTAATTTAAGATTTATAAGAAAT
TATCAATTTTCTTTTGAATTCTTCAGTTGTTATTTTGTATGATAAAAAGC
AATGAATTTTTGGTAATTTTAAAGACCAAGAAACTTGAGCTGTTTTAAAG
GAAATTAGTGTTTTCACTCAACCTAAGGGGTGTGCCAGAAATAAGTTGTT
ACCCTCTTTTAAAAAAAAATTCTCAAATTCTGTCTATATTCTCAAAGCAT
CGAAGAATTTCGTTCATTTTGTTAAAATTGCTAAAAAATCGGGGAAAATC
GACCTATCGGTAAATCCCTATTTTAACGAGAACTAATTTGGCCAAAATAA
GTTTTCGCCCGTTTTCGCTGAAATAAGTTCCTTTAAAAATGTATAATTGA
TTTTAATTTTAAAAGTTGAATCTGTTAAGTTTATTACAAAGACTACTTTA
AGCGTACAAACTTTCGCGAACAGAAACTTTCGCGATTTTAAAAATTCTTT
GAAGGGCCATTTGCGAAAGTTTATGATCGCGAAAAATTCTTGACAAAATA
GAAAATCAGTAAAACTTAAAACTTTTGAATAAACTTTAACATTTACGGCA
CTTTTTAGCCTGTATAAGTCAAAATAATAGGCCTTTTAAGCCTGATAAGT
CAAAAGACAAAAGAAGAAGCATTTGTCCAAGTTTATGCTCGCGAAAGTAA
ATGTTGTAAATTTAACGATTTTTCGACCTCGTGGAAGTTTCTGTTCGCGA
AAGTTTGTACGCCTAAAGGGTCCGTCCACATAGTACGTACGCAATTAGGG
GGGGGGTCTTCTCAAAAGCGTATGCTTGCGTACAGGGGGAGGGGAGGGGT
CAAAGGAAAATGTACGTAGGCAGAAAAAAATTTTCATAGCCCTTTTTCGC
TTGTTATACGCATCAAGGAAAAGAAAAAGTTTCTTGATAAACATTGAGTT
TCATGAATGAAATAATGGTCCGAACGAAACGATTTGAATTCGAAATTTTC
TTCAACTAAGGGGGGCGGGTGAGTACTTGCCAGAGGGGGTATAGCCATTT
GCATACGCTTGCGTATAGGGGGAGGGGGTACTCGATTTTCGATATTTTAG
TGCGTACGTACTATGTGGACGGCCCCAAAGTGCTTTAAAATAGATAATTT
CTCTATTTTTATAGACTTCTCAAATTTGTTCAATGGAAAAGATCAGACGT
TCCGTTTCCAATCATTGCCAATCAACCAATATCCGTTTTGTCTGTCATCG
TCAGCCAGTGATTTGCAAATCAGATGTAAATGTCAGGCTATCCTAAACAT
AGGTTGGTATCCTTGTGGTGAGAGATCGTGTGATAATGGCGAAGATAAAC
TCACATGCAACATGTTTTATTGCCAACGGACACATAAGTTTATTTATCTG
GTAGATAAGTGGCAAGATTGTTTGAATACTACCCTATGATAAAGCTATCT
TGGTTGATAATCTCATTATTGTCCACAATACTTTTCTCTGATAATGTTTT
CACTCCTTGCTAATAAAATGTGATTCGATTTGAATTTCTTGGTCATGAAA
TAGTGCTTTTGAAAGACACTATGAAGTGAATTAAGTTAAAAAGGCTCGAT
AGTTAAATCCGCAAAAAAATGCTGAAAGCTGGGATTTGTTAAAGTTTATT
ATTACGCAAAAGAAATTTCCTTTCAGTGACATACAACCTTCTGATACATT
TTCTGCATGCTGGTGGATAAGTAGTTATGTTAAAGAAATCTTTTTTTACC
TCCTTTTCACAAAAAAATTGTGAAAATCTAGGATGAAAACAAAATAAAAG
TAGCAAAATTTCGACATTTTGTTCCAGCGGAGTTTTCGAAAGCTTGATTC
GTGGCAGCTCCATACCCTTTGATGTCACGTTAAAGTGAAATACCTTGCAG
CCAACTTGGCTAGGTCTTATCGTCCTTTTTCAGTTTACTTCACATGTGTG
CCAGCGTTTAAGTGACCCAATAAAAGACTTTAAGATAATAATTAAGCGAA
TGTCAGAAATAGTTAAACAAAATTCTATTATTATAGTCAAGGGGGGATTA
GGAGTGTCTGCCTCTAGCTAAATGTGCTTACAGACCAAGAGTAGACATGC
TTTTATAAGAACATACCATCATAAGAATAGAGGGTTTCGATGACCAATAT
GTTAAGAACAAATTCAGAACATTTTAAGGCTTTACTGACTCTATAAGACT
CGATTTTCAAGAAAATGGACCAAAGTACTCACAAAATAGTGAAAATAATA
ACATGCTAAAACTCAAAAAGTTAAGATCCAAATATTCCAAACAATTTTTG
GATGTTCTTATTAAAAAAAACCTGTAAAGTCTTAAAAACATGGAGCTGGC
TACTGTGCAGACTATGAAATACCACAATCTTCTCAGACTTTGTACATAAA
CAATTTGATATTGACATATATACCATTTTTAGCATATTTATTTTTTGATG
TTATAAGTTTAGTTTTAGTTTATTTATATACCATGTTATTTTATTATGTT
AGAGTATTTATCCACCGATTATTTTGTATTCTTACATTTATATTGCTTTT
TATATATGCAAGCAAAATATTTTATATTTTACTGTAGCAAAGAAATCATT
GAAAATTTTTGATCTTCAAATTGTATCAGCCTCAGGCCTGTTATTTTCCT
GTCGCGCGTTTTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020733-exon-sc0000365-1575043694:170655..171134 | TCONS_00020733-exon-sc0000365-1575043694:170655..171134 | Clytia hemisphaerica | exon |
| TCONS_00020733-exon-sc0000365-1575043694:166958..167016 | TCONS_00020733-exon-sc0000365-1575043694:166958..167016 | Clytia hemisphaerica | exon |
| TCONS_00020733-exon-sc0000365-1575043694:166522..166684 | TCONS_00020733-exon-sc0000365-1575043694:166522..166684 | Clytia hemisphaerica | exon |
| TCONS_00020733-exon-sc0000365-1575043694:163870..165370 | TCONS_00020733-exon-sc0000365-1575043694:163870..165370 | Clytia hemisphaerica | exon |
| TCONS_00020733-exon-sc0000365-1510915933:170655..171134 | TCONS_00020733-exon-sc0000365-1510915933:170655..171134 | Clytia hemisphaerica | exon |
| TCONS_00020733-exon-sc0000365-1510915933:166958..167016 | TCONS_00020733-exon-sc0000365-1510915933:166958..167016 | Clytia hemisphaerica | exon |
| TCONS_00020733-exon-sc0000365-1510915933:166522..166684 | TCONS_00020733-exon-sc0000365-1510915933:166522..166684 | Clytia hemisphaerica | exon |
| TCONS_00020733-exon-sc0000365-1510915933:163870..165370 | TCONS_00020733-exon-sc0000365-1510915933:163870..165370 | Clytia hemisphaerica | exon |
| TCONS_00020733-exon-sc0000365-1491911889:170655..171134 | TCONS_00020733-exon-sc0000365-1491911889:170655..171134 | Clytia hemisphaerica | exon |
| TCONS_00020733-exon-sc0000365-1491911889:166958..167016 | TCONS_00020733-exon-sc0000365-1491911889:166958..167016 | Clytia hemisphaerica | exon |
| TCONS_00020733-exon-sc0000365-1491911889:166522..166684 | TCONS_00020733-exon-sc0000365-1491911889:166522..166684 | Clytia hemisphaerica | exon |
| TCONS_00020733-exon-sc0000365-1491911889:163870..165370 | TCONS_00020733-exon-sc0000365-1491911889:163870..165370 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000365 | supercontig | sc0000365:163870..171134 - |
Blast
The following BLAST results are available for this feature:
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