TCONS_00020752 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020752
Unique NameTCONS_00020752
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length479

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020752 ID=TCONS_00020752|Name=TCONS_00020752|organism=Clytia hemisphaerica|type=transcript|length=479bp
CGAACTTTTCTCTCTTCCTTTCCTTTAATAAAAATGATCCTTTAAAAtgc
ttttcaaaacatttaggATTTCATTTTCAGAAGTGTTCTTCTTTCTTGCG
ATGCCTTTAAGTCTTCGTGTAACCTTATTATCAACACCATCCTCTTGTTG
GAGTAGGTAAATCATTTCATTAATGAGTTGTTTCCAGTGCAGCGAAAGAG
CTCCATCAGATATATTCAGATTATTATTTGTATAATATGGACCATTACTA
TGCTCATCAGAAGCGTAAACAACATCAACTTCAATATCATCGAAATCTGA
ACAAAAATCTTCCAGTTCGGAGACACACGAGCTTAAACCTCTACTGTTAT
CTACACAGGGTGATTTACTCAAGAACATTGTAACATTGCCACGAATAGGC
CTCTCCAGATCGGATAATTTAATCCTCAACCTTTCCAAGACATATTTTTC
TGCATGTAAAGGACGGTGGTAAACGCTCA
Run BLAST on NCBI

protein sequence of TCONS_00020752-protein

>TCONS_00020752-protein ID=TCONS_00020752-protein|Name=TCONS_00020752-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
SVYHRPLHAEKYVLERLRIKLSDLERPIRGNVTMFLSKSPCVDNSRGLSS
CVSELEDFCSDFDDIEVDVVYASDEHSNGPYYTNNNLNISDGALSLHWKQ
LINEMIYLLQQEDGVDNKVTRRLKGIARKKNTSENEILNVLKSILKDHFY
Run BLAST on NCBI

transcript from alignment at sc0000365:198291..198769

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020752 ID=TCONS_00020752|Name=TCONS_00020752|organism=Clytia hemisphaerica|type=transcript|length=479bp|location=Sequence derived from alignment at sc0000365:198291..198769 (Clytia hemisphaerica)
TGAGCGTTTACCACCGTCCTTTACATGCAGAAAAATATGTCTTGGAAAGG
TTGAGGATTAAATTATCCGATCTGGAGAGGCCTATTCGTGGCAATGTTAC
AATGTTCTTGAGTAAATCACCCTGTGTAGATAACAGTAGAGGTTTAAGCT
CGTGTGTCTCCGAACTGGAAGATTTTTGTTCAGATTTCGATGATATTGAA
GTTGATGTTGTTTACGCTTCTGATGAGCATAGTAATGGTCCATATTATAC
AAATAATAATCTGAATATATCTGATGGAGCTCTTTCGCTGCACTGGAAAC
AACTCATTAATGAAATGATTTACCTACTCCAACAAGAGGATGGTGTTGAT
AATAAGGTTACACGAAGACTTAAAGGCATCGCAAGAAAGAAGAACACTTC
TGAAAATGAAATcctaaatgttttgaaaagcaTTTTAAAGGATCATTTTT
ATTAAAGGAAAGGAAGAGAGAAAAGTTCG

Coding sequence (CDS) from alignment at sc0000365:198291..198769

>TCONS_00020752 ID=TCONS_00020752|Name=TCONS_00020752|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at sc0000365:198291..198769 (Clytia hemisphaerica)
AGCGTTTACCACCGTCCTTTACATGCAGAAAAATATGTCTTGGAAAGGTT
GAGGATTAAATTATCCGATCTGGAGAGGCCTATTCGTGGCAATGTTACAA
TGTTCTTGAGTAAATCACCCTGTGTAGATAACAGTAGAGGTTTAAGCTCG
TGTGTCTCCGAACTGGAAGATTTTTGTTCAGATTTCGATGATATTGAAGT
TGATGTTGTTTACGCTTCTGATGAGCATAGTAATGGTCCATATTATACAA
ATAATAATCTGAATATATCTGATGGAGCTCTTTCGCTGCACTGGAAACAA
CTCATTAATGAAATGATTTACCTACTCCAACAAGAGGATGGTGTTGATAA
TAAGGTTACACGAAGACTTAAAGGCATCGCAAGAAAGAAGAACACTTCTG
AAAATGAAATcctaaatgttttgaaaagcaTTTTAAAGGATCATTTTTAT
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011649XLOC_011649Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020752-proteinTCONS_00020752-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020752-exon-sc0000365-1491911889:198291..198769TCONS_00020752-exon-sc0000365-1491911889:198291..198769Clytia hemisphaericaexon
TCONS_00020752-exon-sc0000365-1510915933:198291..198769TCONS_00020752-exon-sc0000365-1510915933:198291..198769Clytia hemisphaericaexon
TCONS_00020752-exon-sc0000365-1575043694:198291..198769TCONS_00020752-exon-sc0000365-1575043694:198291..198769Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000365supercontigsc0000365:198291..198769 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.394197	0.384404	0	0.145555	0.354398	0.84015	0.844671	0.158154	0.664365	2.74308	0	0.525066	0.349558	0.726038	10.595	5.44482	0.295922	0.808829	2.51424	1.46165	0	0.185903	5.27308	7.25948	4.93771	5.03633	73.8714	71.723	8.45888	3.41758
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013158APOBEC_N
Vocabulary: Molecular Function
TermDefinition
GO:0016814hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020752 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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