TCONS_00020808 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020808
Unique NameTCONS_00020808
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020808 ID=TCONS_00020808|Name=TCONS_00020808|organism=Clytia hemisphaerica|type=transcript|length=1367bp
ttattataAAAGGGGTTAACCCTTTAGCTTGGGACTTAAACCTTTCAGCT
TGCTGCTTTGATTCCCTCCCCCAGAAAACTATGAACTCTTTTTTGTAGCT
TTACTTGAGTTTTTTATTGAGTcttttttggaagattttttaaaaatctt
attaataaaactttttctttcagtGTCAAGGATGGGATCTTTCGTCAGTA
CAAGTCATCAAgaagtttaaaagatttccaagaTTTTATTATCGAAGAAA
AATGGAAGACACTTAAACCAATGACTTCTTGGCTTTCCCCTGATTCCTAC
GTgATGACTGGAGTCAGTCAacttttctcattttcaatGAACCTAAAGaa
tttccaCGAAAGTTTGAGAACTGATTATGGTTTACCTGGTTGGGCATCCA
TGCTTTTGTTCGGTTTAGCTGTTATTGTTATTGGTCTTCTCTTGGGAATT
ggaTTAGTTCTGTTTATTGATTGGTGGATGGGACCACAACCAGACATGTA
CGAAGGTCAACAAATGTCCGTCGAAGAAATTGATGGAAAGAGGGATGAAG
GTGAAAGCGAAGAAAAAGTGGAAGAAATTCGTGAagctgaagaagaaaat
gaagaagaagaagaaacttCAAAGTCTACAGAGAAGAAAAACCTTCGAAA
GCGAAAAGTAAAGAAGGAAGATTGAACGCTGTGAGAATGTTGTTTGTGGT
GCAGCAAGTGGTTTGAATTTTCACCATCCGTCAAAGCCAGTGATGTTTTA
CTGTCAAAAGACTTTACTTAGGATagctaattttttcaaaatatttcata
taGCGCTATTTATATTCTCCATGTAGCAAAATTATTTTCCCTCGcatctt
ttgtttttcaatttatatAAATTTTCGTCAAAAGAACCGTTATCAATTTG
TACAAGGGAATTGTTTTTAGGtaatttattttcagttatTACATTAGATT
AGTAGACTGAGCGtcatttttaagaacaatttgtaGGTTAACGtgctttt
cattaaaaaatgattaCAATTTCAAAGTGTTACATTTCTCAATATTTCAA
ACTGTTACAGTTAAGGATCTAGAGATTTCTTGGTTCTGTTTGTGATTTTG
TTGAATGAGGTGGCTACTTTTTTAAATAAGCTAAGATCCACTTTAACGAC
GAAGACTTAGGCGTCTTTCGtcgttgtttttattttctgtcATTTTCCTG
ACAAGCTAGATATTACTATACGAtgcattttttccttttttaaatagtat
ttttttttttgaaattttactagGAAATGTTGTTATTCTTCAAAGATATG
AATTGACTCTATCCCgagattttttctcatttttaaatgCATTGCGAGGC
CCCTTGTTATGTGCCAG
Run BLAST on NCBI

protein sequence of TCONS_00020808-protein

>TCONS_00020808-protein ID=TCONS_00020808-protein|Name=TCONS_00020808-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
MTSWLSPDSYVMTGVSQLFSFSMNLKNFHESLRTDYGLPGWASMLLFGLA
VIVIGLLLGIGLVLFIDWWMGPQPDMYEGQQMSVEEIDGKRDEGESEEKV
EEIREAEEENEEEEETSKSTEKKNLRKRKVKKED
Run BLAST on NCBI

transcript from alignment at sc0000370:296821..300225-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020808 ID=TCONS_00020808|Name=TCONS_00020808|organism=Clytia hemisphaerica|type=transcript|length=3405bp|location=Sequence derived from alignment at sc0000370:296821..300225- (Clytia hemisphaerica)
TTATTATAAAAGGGGTTAACCCTTTAGCTTGGGACTTAAACCTTTCAGCT
TGCTGCTTTGATTCCCTCCCCCAGAAAACTATGAACTCTTTTTTGTAGCT
TTACTTGAGTTTTTTATTGAGTCTTTTTTGGAAGATTTTTTAAAAATCTT
ATTAATAAAACTTTTTCTTTCAGTGTCAAGGATGGGATCTTTCGTCAGTA
CAAGTCATCAAGAAGTTTAAAAGATTTCCAAGATTTTATTATCGAAGAAA
AATGGAAGACACTTAAACCAATGACTTCTTGGCTTTCCCCTGATTCCTAC
GTGTAATTAATCTCTTTCCTTTGCGAAACACTGATTAATTGATTCTTCAA
AAATCTTATTTCCTCTTAAAGAGATTTTTTACTATTCTTGTTATCAAGGC
TTTGAATATTATGACATTTTTTTAGTTTACAAATTGGTAGTTATATTTTA
ACTTTGTGTTTTACTTTTTTGTCAAAAAGTATTAAAATGTCGATGAACTA
TTTTTATCTTTTCAGGATGACTGGAGTCAGTCAACTTTTCTCATTTTCAA
TGAACCTAAAGGTAACTTTTAGAAAATAGCATAGAATATCTTTCTCTTTA
ATCATCTGTTTTCTTTTTTTGCAAACAGGATAAACCCTCGTGTGTTGAAT
TCTTCCAGTTTATGCTCAATCCATTTCACTGGCTTGACCATAAAAACAAA
AATTATCTTTCGAAATTTGATCAACGGACATAATCATTATAGAATGTAGA
ATTCCGATATTTACTCAGTTTTAATTTTATGATTTCATTTTCAGAATTTC
CACGAAAGTTTGAGAACTGATTATGGTTTACCTGGTTGGGCATCCATGCT
TTTGTTCGGTTTAGCTGTTATTGTTATTGGTCTTCTCTTGGGAATTGTAA
GGTTAATTTTTATTCAGTCTAAAGATATAGAGATTTGTAAAGCAGTGTAT
GCCTTAAGAGGTATCTATTCGTGACTTTTTACTTTCAAGAATATAAACTT
CCTTATTTAAAGTTATGTACTAAAAAGGGTAAAAATCGTGAAAGTCTCTG
CTTGTGAAAAATTGTACGCCTAAAGTAGTCTGAGTTAGCTAAACGACTGT
AAATTACCTATCGATATTGATCACATGACTAAATTAGAAAATTCAACCTA
TTTGATTGCGGTTCCTGACCTGGTAGATAATCATTTTTCGAGTTTTTCGA
ATGTTTTGAATCTTCAGTTTTCGGAATCCATACATTAAACAGAGGCGTAT
TTAGAGTAGGTCAAGTAGGTCAAGTGACATAGTTCCAAGAAATTTAAAAG
TATGAAAAATTGTGAAACGGGAATAGTGTTAGCTAAAGTACAAGTGTGAT
ACAAAAGCGAATCTCGGATAAAATAACTATTGAAAGATTATAAACGCGAG
ATGAAAGGAAAATCAAACCTCTCCAAGAACTCCACTCGACTCAAATTTTT
GACCTACTTGGCAAAATTCCTAAATACGCCACTGCATTAAAGTTTTGAAA
TTCTCTTTCAAAGCTCCAGTAATAGCAAAAAAATCTAATTTGCGTCAGAA
CACTTGAAAGACTTTTTTTTATTCTTGGAATTCTTGTTTTTTATTGAGGC
ACTTCGCTATGAAAAGACTGACGGTAATTTGTTTTTTTTTTCTTTCAGGG
ATTAGTTCTGTTTATTGATTGGTGGATGGGACCACAACCAGACATGTACG
AAGGTCAACAAATGTCCGTCGAAGAAATTGATGGAAAGAGGGATGAAGGT
GAAAGCGAAGAAAAAGTGGAAGAAATTCGTGAAGCTGAAGAAGAAAATGA
AGAAGAAGAAGAAACTTCAAAGTCTACAGAGAAGAAAAACCTTCGAAAGC
GAAAAGTAAGTGAGATTGACTAATTTGGCACCTATCTATCTATATCACTT
TAAGAGTAATGTGTAGTTTTTTCGACCCAATGCTTTCTGTAGTAGTTTAT
TTTAAGAATGGGCTCTTCCAGAAAAAAAACGTTCATAGGGGGTGGAAGAT
ATATTGTCCAGGGGTATCGAAAAATCCTGAAAAACTGCTATGTCCATGGG
GTGAATTTGCAATGTCCATGGGTAATTTTAGTGTCCAGGGGGTAGATTTT
ATGCTTGTTCAGAGGTAAAACGCGTGTCCAGGGGGTGAAAAATCGAAATG
TCCAGGAGTAGATCTCTCCCCATGAACGAATTTTTCTGGAAGAGCCCAAT
AGATGGTCTTTAGCATCAATCAGTGAAATAAAATCATGACCGACATGATT
TAGTTTTTCTACGCACTTCTTGTTTCTTAGCTGTGTCTTCTTAAAACCAA
ACTAAAATTTATACTTTTGCCTGCTTCATTTTGTCATAAGTCATTGGGCC
ATCCCATTAAATTTCCATACAAGGGGCTGGACGAACCTTTTCAAGTCAAA
AAAAGATTTCTTGGAAATGCGTAGATACCCCATTGAAAATGGAAAGATTT
TACAAAAAATCCCTTGGAAAATTTATTTTCATCCCTTAAAGTGACGGTGG
ACGAACGAAAATCAGTCTTTTGCCCCTTGGAAATTTTAAAATAATTTTTC
ACTCCCTGGAGAAACAACATAACACTCTTTCAGATCCCCTGGAAATTCTG
CTCAAGTCACCCCCTGGAAATGTTCGTCCACCCCCCTGTATGGACCTAAA
ATGGAATGAATGATTCATTTTCATTTCATTTCTTTCACACTTCAGGTAAA
GAAGGAAGATTGAACGCTGTGAGAATGTTGTTTGTGGTGCAGCAAGTGGT
TTGAATTTTCACCATCCGTCAAAGCCAGTGATGTTTTACTGTCAAAAGAC
TTTACTTAGGATAGCTAATTTTTTCAAAATATTTCATATAGCGCTATTTA
TATTCTCCATGTAGCAAAATTATTTTCCCTCGCATCTTTTGTTTTTCAAT
TTATATAAATTTTCGTCAAAAGAACCGTTATCAATTTGTACAAGGGAATT
GTTTTTAGGTAATTTATTTTCAGTTATTACATTAGATTAGTAGACTGAGC
GTCATTTTTAAGAACAATTTGTAGGTTAACGTGCTTTTCATTAAAAAATG
ATTACAATTTCAAAGTGTTACATTTCTCAATATTTCAAACTGTTACAGTT
AAGGATCTAGAGATTTCTTGGTTCTGTTTGTGATTTTGTTGAATGAGGTG
GCTACTTTTTTAAATAAGCTAAGATCCACTTTAACGACGAAGACTTAGGC
GTCTTTCGTCGTTGTTTTTATTTTCTGTCATTTTCCTGACAAGCTAGATA
TTACTATACGATGCATTTTTTCCTTTTTTAAATAGTATTTTTTTTTTTGA
AATTTTACTAGGAAATGTTGTTATTCTTCAAAGATATGAATTGACTCTAT
CCCGAGATTTTTTCTCATTTTTAAATGCATTGCGAGGCCCCTTGTTATGT
GCCAG

Coding sequence (CDS) from alignment at sc0000370:296821..300225-

>TCONS_00020808 ID=TCONS_00020808|Name=TCONS_00020808|organism=Clytia hemisphaerica|type=CDS|length=2025bp|location=Sequence derived from alignment at sc0000370:296821..300225- (Clytia hemisphaerica)
GTAAAGAAGGAAGATTGAGGATTAGTTCTGTTTATTGATTGGTGGATGGG
ACCACAACCAGACATGTACGAAGGTCAACAAATGTCCGTCGAAGAAATTG
ATGGAAAGAGGGATGAAGGTGAAAGCGAAGAAAAAGTGGAAGAAATTCGT
GAAGCTGAAGAAGAAAATGAAGAAGAAGAAGAAACTTCAAAGTCTACAGA
GAAGAAAAACCTTCGAAAGCGAAAAAATTTCCACGAAAGTTTGAGAACTG
ATTATGGTTTACCTGGTTGGGCATCCATGCTTTTGTTCGGTTTAGCTGTT
ATTGTTATTGGTCTTCTCTTGGGAATTGATGACTGGAGTCAGTCAACTTT
TCTCATTTTCAATGAACCTAAAGATGACTTCTTGGCTTTCCCCTGATTCC
TACGTGTAAAGAAGGAAGATTGAGGATTAGTTCTGTTTATTGATTGGTGG
ATGGGACCACAACCAGACATGTACGAAGGTCAACAAATGTCCGTCGAAGA
AATTGATGGAAAGAGGGATGAAGGTGAAAGCGAAGAAAAAGTGGAAGAAA
TTCGTGAAGCTGAAGAAGAAAATGAAGAAGAAGAAGAAACTTCAAAGTCT
ACAGAGAAGAAAAACCTTCGAAAGCGAAAAAATTTCCACGAAAGTTTGAG
AACTGATTATGGTTTACCTGGTTGGGCATCCATGCTTTTGTTCGGTTTAG
CTGTTATTGTTATTGGTCTTCTCTTGGGAATTGATGACTGGAGTCAGTCA
ACTTTTCTCATTTTCAATGAACCTAAAGATGACTTCTTGGCTTTCCCCTG
ATTCCTACGTGTAAAGAAGGAAGATTGAGGATTAGTTCTGTTTATTGATT
GGTGGATGGGACCACAACCAGACATGTACGAAGGTCAACAAATGTCCGTC
GAAGAAATTGATGGAAAGAGGGATGAAGGTGAAAGCGAAGAAAAAGTGGA
AGAAATTCGTGAAGCTGAAGAAGAAAATGAAGAAGAAGAAGAAACTTCAA
AGTCTACAGAGAAGAAAAACCTTCGAAAGCGAAAAAATTTCCACGAAAGT
TTGAGAACTGATTATGGTTTACCTGGTTGGGCATCCATGCTTTTGTTCGG
TTTAGCTGTTATTGTTATTGGTCTTCTCTTGGGAATTGATGACTGGAGTC
AGTCAACTTTTCTCATTTTCAATGAACCTAAAGATGACTTCTTGGCTTTC
CCCTGATTCCTACGTGTAAAGAAGGAAGATTGAGGATTAGTTCTGTTTAT
TGATTGGTGGATGGGACCACAACCAGACATGTACGAAGGTCAACAAATGT
CCGTCGAAGAAATTGATGGAAAGAGGGATGAAGGTGAAAGCGAAGAAAAA
GTGGAAGAAATTCGTGAAGCTGAAGAAGAAAATGAAGAAGAAGAAGAAAC
TTCAAAGTCTACAGAGAAGAAAAACCTTCGAAAGCGAAAAAATTTCCACG
AAAGTTTGAGAACTGATTATGGTTTACCTGGTTGGGCATCCATGCTTTTG
TTCGGTTTAGCTGTTATTGTTATTGGTCTTCTCTTGGGAATTGATGACTG
GAGTCAGTCAACTTTTCTCATTTTCAATGAACCTAAAGATGACTTCTTGG
CTTTCCCCTGATTCCTACGTGTAAAGAAGGAAGATTGAGGATTAGTTCTG
TTTATTGATTGGTGGATGGGACCACAACCAGACATGTACGAAGGTCAACA
AATGTCCGTCGAAGAAATTGATGGAAAGAGGGATGAAGGTGAAAGCGAAG
AAAAAGTGGAAGAAATTCGTGAAGCTGAAGAAGAAAATGAAGAAGAAGAA
GAAACTTCAAAGTCTACAGAGAAGAAAAACCTTCGAAAGCGAAAAAATTT
CCACGAAAGTTTGAGAACTGATTATGGTTTACCTGGTTGGGCATCCATGC
TTTTGTTCGGTTTAGCTGTTATTGTTATTGGTCTTCTCTTGGGAATTGAT
GACTGGAGTCAGTCAACTTTTCTCATTTTCAATGAACCTAAAGATGACTT
CTTGGCTTTCCCCTGATTCCTACGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011670XLOC_011670Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020808-exon-sc0000370-1575043694:299924..300225TCONS_00020808-exon-sc0000370-1575043694:299924..300225Clytia hemisphaericaexon
TCONS_00020808-exon-sc0000370-1575043694:299665..299710TCONS_00020808-exon-sc0000370-1575043694:299665..299710Clytia hemisphaericaexon
TCONS_00020808-exon-sc0000370-1575043694:299330..299431TCONS_00020808-exon-sc0000370-1575043694:299330..299431Clytia hemisphaericaexon
TCONS_00020808-exon-sc0000370-1575043694:298371..298577TCONS_00020808-exon-sc0000370-1575043694:298371..298577Clytia hemisphaericaexon
TCONS_00020808-exon-sc0000370-1575043694:296821..297530TCONS_00020808-exon-sc0000370-1575043694:296821..297530Clytia hemisphaericaexon
TCONS_00020808-exon-sc0000370-1510915933:299924..300225TCONS_00020808-exon-sc0000370-1510915933:299924..300225Clytia hemisphaericaexon
TCONS_00020808-exon-sc0000370-1510915933:299665..299710TCONS_00020808-exon-sc0000370-1510915933:299665..299710Clytia hemisphaericaexon
TCONS_00020808-exon-sc0000370-1510915933:299330..299431TCONS_00020808-exon-sc0000370-1510915933:299330..299431Clytia hemisphaericaexon
TCONS_00020808-exon-sc0000370-1510915933:298371..298577TCONS_00020808-exon-sc0000370-1510915933:298371..298577Clytia hemisphaericaexon
TCONS_00020808-exon-sc0000370-1510915933:296821..297530TCONS_00020808-exon-sc0000370-1510915933:296821..297530Clytia hemisphaericaexon
TCONS_00020808-exon-sc0000370-1491911889:299924..300225TCONS_00020808-exon-sc0000370-1491911889:299924..300225Clytia hemisphaericaexon
TCONS_00020808-exon-sc0000370-1491911889:299665..299710TCONS_00020808-exon-sc0000370-1491911889:299665..299710Clytia hemisphaericaexon
TCONS_00020808-exon-sc0000370-1491911889:299330..299431TCONS_00020808-exon-sc0000370-1491911889:299330..299431Clytia hemisphaericaexon
TCONS_00020808-exon-sc0000370-1491911889:298371..298577TCONS_00020808-exon-sc0000370-1491911889:298371..298577Clytia hemisphaericaexon
TCONS_00020808-exon-sc0000370-1491911889:296821..297530TCONS_00020808-exon-sc0000370-1491911889:296821..297530Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020808-proteinTCONS_00020808-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000370supercontigsc0000370:296821..300225 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
91.85	93.1533	51.5824	47.4109	32.8461	23.2782	41.8309	43.8448	44.8446	42.0842	38.3027	31.1367	21.5168	17.9229	31.0706	35.7705	53.381	47.5475	10.78	16.9718	26.2448	24.9235	46.8255	45.3496	23.9795	26.5092	32.7254	21.9685	40.2617	31.562
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020808 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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