TCONS_00020836 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020836
Unique NameTCONS_00020836
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length579

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020836 ID=TCONS_00020836|Name=TCONS_00020836|organism=Clytia hemisphaerica|type=transcript|length=579bp
GGACTTCGAACAGATCGATATGGTTGGGTGCAGGATAACTATTTACCAGA
TAATGGATTCGAGCAGCCAAAATTATACGACTGGATCAAAAGATTTGACA
GTTACGGTAAAAAGGTCAGCATCACATCTCTAGAAGCCATCCAAGCTTCG
CAATCGGGCAAAATCAAATCTGAGTCACCCACTGTTTTCTTCTACAAAAG
AAATATGTTGGATATACCAAATATGCCGAAAGGTACAAAATTTCCAGAAG
AATTTCGATGGATTTTTGAATTTGAGTATGTGGAAAAAGAGATGGAAGAT
CTtcaattgaaatttcaatacaaCGTGAACGAAAATGCTTCAGCTTATGA
ACAGGATAGAGATGCTTTGAACAAgTTCATTCAAAATCATCCTCAAATCA
AATGGTTTGAATACAACGCAGAATTCGTCAATGCAAAAATCACTTGCAAA
CGAGAGAACGCCAAGAGTTTTGGAGTTGGTTACGTGAAAAAGTTGGagga
tttcgaaaaacgagTCGAGGATGATTTAATGGAGGCGATTTTATCGAATT
ATTCATCCGTTGATACCACTCAGGTTGAT
Run BLAST on NCBI

transcript from alignment at sc0000371:72669..74567+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020836 ID=TCONS_00020836|Name=TCONS_00020836|organism=Clytia hemisphaerica|type=transcript|length=1899bp|location=Sequence derived from alignment at sc0000371:72669..74567+ (Clytia hemisphaerica)
GGACTTCGAACAGATCGATATGGTTGGGTGCAGGATAACTATTTACCAGA
TAATGGATTCGAGCAGCCAAAGTTAGTGAAAATTAACTCTTTCGAACTTT
TATGAACATATTAACATGGTGgattttttcttgtaaataatCTTGAATCT
TGCAATTATTATGGtgccttttttttaatgtttttgatttttatagcCAC
ACTCTCAGAAAGGACGTCCTTCTCAAAGGGCTCTGTTTAATAAGAAACTC
ATTACCCTCACGCCAATAGCTTGAGATATGATCATATCATAGAAACAGTC
AGCTCAAAAAAGGGAATCCAAAGCGTCCAAATTCTTCCTCATCAATGATA
TTTTTACTTGCAAAAAACTAATTCTTTTTCCTTGATATATTAAACTCTTT
TCGTCAGATTATACGACTGGATCAAAAGATTTGACAGTTACGGTAAAAAG
GTCAGCATCACATCTCTAGAAGCCATCCAAGCTTCGCAATCGGGCAAAAT
CAAATCTGAGTCACCCACTGTTTTCTTCTACAAAAGAAATATGTTGGATA
TACCAAATATGCCGAAAGGTAAAATTTATAGGTTCATTCACCAAGCTTAA
TTTTCCATTGAAATAGCATGCTTTTTCCATCATGCGTAATGAGGCCCTAT
CTTCACAGAGGactttcaattcacgcaatcacacaatttcttttcgaaat
tcacgcaatttcTGCTCATGCAAAGTTTTCTAATTCACGCATCCgacaaa
ttttgaattcttCAGTAAAGTGGCttttaacaacattttttcttCATAGC
TTTATTCAATCTTTACGTCCTCATAAACTATATATCCCAATGGTAAGCCT
CTTAGTAAGGTTTCTTAACGCTGGGCTAACGATAGTAAAATTGGGGTCAA
AATTGCTGTTTACAAAATGCTGACtttgcaaaaatatttgaatattcAAA
CGAATTGTCAAAACCAAATAGATTGCGTCACGTCAAAAATTGTATCACCG
TGATaactttcaaataaattttctgCTATTAAGGTACAAAATTTCCAGAA
GAATTTCGATGGATTTTTGAATTTGAGTATGTGGAAAAAGAGATGGAAGA
TCTtcaattgaaatttcaatacaaCGTGAACGAAAATGCTTCAGCTTATG
AACAGGATAGAGATGCTTTGAACAAGTAGGGAAATTATATCCGGGGTTAA
TCTTTACCAGAGTGtatgtatctcacgtttatcgctttgtagtacactct
gtgcgcattgctATGAAAAAGTACGGATAAGTTTTATGTGTTTCAAAATG
CCATTgtgttaaaaattattttgctttTCAAATCTTTCCGAAAACATCAT
CCTAACCATTAATGAACACTTTTATTCCAAGACTTTGCACTTTCCAAAAG
GAAAAAGCTCATTTTCTTCAGCTATCttcagaatttcatgcttttcAAGA
AAGTAATTATAAGGGATCCAGAAACCTCTTTGTTCCGGATTTATAACCCC
TCAAAGGTGAAACCTAGGAGGTCCGCCCATCGGGCGCCAAAGATGAGAAA
GTTCATTAAGATCTTtccaactttttaaatttgtttttaaaatgtgcTCA
TCGACATCGTAAAGAAATAATTTGGCCTTAAAATTGGATAGTGGCCAATG
AAAAATATACATATGTTTTATTTTCtaacttttccatttttcaggTTCAT
TCAAAATCATCCTCAAATCAAATGGTTTGAATACAACGCAGAATTCGTCA
ATGCAAAAATCACTTGCAAACGAGAGAACGCCAAGAGTTTTGGAGTTGGT
TACGTGAAAAAGTTGGaggatttcgaaaaacgagTCGAGGATGATTTAAT
GGAGGCGATTTTATCGAATTATTCATCCGTTGATACCACTCAGGTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011685XLOC_011685Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020836-exon-sc0000371-1491911889:72669..72739TCONS_00020836-exon-sc0000371-1491911889:72669..72739Clytia hemisphaericaexon
TCONS_00020836-exon-sc0000371-1510915933:72669..72739TCONS_00020836-exon-sc0000371-1510915933:72669..72739Clytia hemisphaericaexon
TCONS_00020836-exon-sc0000371-1575043694:72669..72739TCONS_00020836-exon-sc0000371-1575043694:72669..72739Clytia hemisphaericaexon
TCONS_00020836-exon-sc0000371-1491911889:73076..73236TCONS_00020836-exon-sc0000371-1491911889:73076..73236Clytia hemisphaericaexon
TCONS_00020836-exon-sc0000371-1510915933:73076..73236TCONS_00020836-exon-sc0000371-1510915933:73076..73236Clytia hemisphaericaexon
TCONS_00020836-exon-sc0000371-1575043694:73076..73236TCONS_00020836-exon-sc0000371-1575043694:73076..73236Clytia hemisphaericaexon
TCONS_00020836-exon-sc0000371-1491911889:73702..73843TCONS_00020836-exon-sc0000371-1491911889:73702..73843Clytia hemisphaericaexon
TCONS_00020836-exon-sc0000371-1510915933:73702..73843TCONS_00020836-exon-sc0000371-1510915933:73702..73843Clytia hemisphaericaexon
TCONS_00020836-exon-sc0000371-1575043694:73702..73843TCONS_00020836-exon-sc0000371-1575043694:73702..73843Clytia hemisphaericaexon
TCONS_00020836-exon-sc0000371-1491911889:74363..74567TCONS_00020836-exon-sc0000371-1491911889:74363..74567Clytia hemisphaericaexon
TCONS_00020836-exon-sc0000371-1510915933:74363..74567TCONS_00020836-exon-sc0000371-1510915933:74363..74567Clytia hemisphaericaexon
TCONS_00020836-exon-sc0000371-1575043694:74363..74567TCONS_00020836-exon-sc0000371-1575043694:74363..74567Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000371supercontigsc0000371:72669..74567 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.2191e-06	1.2625	0.694411	0.788316	0	0.583608	0.755846	2.32586	2.91932	2.54842	5.15646	0	0.912696	0	0.705764	0.603428	0	0.32537	2.19674	0	0.601799	2.60351	2.13164	2.21459	0	0	4.28576	2.27403	1.26536	0.68992
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020836 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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