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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020837 ID=TCONS_00020837|Name=TCONS_00020837|organism=Clytia hemisphaerica|type=transcript|length=808bp
ATTGAATCTTCCATAGTGGCTGTGGAAACATCCCACCACGATAATTTCCC
CTTCATATCACCCACGAGTAAGCTTTTACCATCAACTGAAACCCAAACAG
CCATGCCAGGGACATTCAATATGTGAATTAATTCACCGCTACTTTGATCC
AGGATTTTAACCTTACTTCCAGCTGCAATAGCCACTATATCTCCTTGTGT
ATCTGAAGCAGCAATGTCCCTTCCACCATGATCATATTTAACCAACATTG
GGTCACATTCCTCAGGTATATTGGCCCAATATAACGGGTACGCTTCCCCT
TTGACTGAGGGCTCCGTCCCTAAAGCCAAGGTATCTTTGGTAACATTTGA
GACTGGGGCTTGTGATACAGCCATGTTGAGGCAGAAATTCGGGAATTCCC
GAATGTACGGTGTATAGAGCTGAACAAACGAGGCCCATTGCTTGAGAGCA
TCTATGTCATCTGCATTTGTGAGTGTGTCCAAGGCGAGAGTGTATTCGTC
ACTAAGGCTTTGATGTTGCTTGGCAACAATGCGTTCTTTAACAAAGTAAA
TATTCCTCAAACTCATTTTCAAGCTTTCAAGAGGTGAATCTTGATTCTGG
CGAGCTTTGAGTTGATGGTAGACCAGTTGTTCTAGGGCATGTTCGAAATA
TGCTGGTGGTTCCTCTTGAGGTGTTTCACGGCATTGCTTAGAGACAATAt
cttcgaaaaagtctctcatcCACACGTGTGTTTCTTGTTCGAATAATTCC
GTCATAAATTTTCGGCGCACGGTATATTTGAGCTGGACGTGGAAGAATCG
AAGATAGC Run BLAST on NCBI transcript from alignment at sc0000371:121025..126198+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020837 ID=TCONS_00020837|Name=TCONS_00020837|organism=Clytia hemisphaerica|type=transcript|length=5174bp|location=Sequence derived from alignment at sc0000371:121025..126198+ (Clytia hemisphaerica)
ATTGAATCTTCCATAGTGGCTGTGGAAACATCCCACCACGATAATTTCCC
CTTCATATCACCCACGAGTAAGCTTTTACCATCAACTGAAACCCAAACAG
CCATGCCAGGGACATTCAATATGTGAATTAATTCACCGCTACTTTGATCC
AGGATTTTAACCTTACTTCCAGCTGCAATAGCCACTATATCTCCTTGTGT
ATCTGAAGCAGCAATGTCCCTTCCACCATGATCATATTTAACCAACATTG
GGTCACATTCCTCAGGTATATTGGCCCAATATAACGGGTACGCTTCCCCT
TTGACTGAGGGCTCCGTCCCTAAAGCCAAGGTATCTTTGGTAACATTTGA
GACTGGGGCTTGTGATACAGCCATGTTGAGGCAGAAATTCGGGAATTCCC
GAATGTACGGTGTATAGAGCTGAACAAACGAGGCCCATTGCTTGAGAGCA
TCTATGTCATCTGCATTTGTGAGTGTGTCCAAGGCGAGAGTGTATTCGTC
ACTAAGGCTTTGATGTTGCTTGGCAACAATGCGTTCTTTAACAAAGTAAA
TATTCCTCAAACTCATTTTCAAGCTTTCAAGAGGTGAATCTTGATTCTGG
CGAGCTTTGAGTTGATGGTAGACCAGTTGTTCTAGGGCATGTTCGAAATA
TGCTGGTGGTTCCTCTTGAGGTGTTTCACAGCATTGCTTGGTGATaatgt
cttcaaaaaaatctcTCATCCACGCGTGTGTTTCTTGTTCGAATGATTCT
GTCATAAATTTTCGGCGCACGGCATATTTGAGCTGGTCGTGGAAGAATCG
AAGATAGCCACCACCACCTAAAAAGACATAGTTTCTATTTTATGCGACca
gtttttttcatatttatttGTTGATACATTTTAAGTTCAAGTCTGAAGTC
GCTAAggactttcaaaattttactgaCGGTACCTCTAAAACCCTTTCTAA
CAAATAACAAATAATGCAGTAACCACATttgagattttcttattttcttt
tttccagaTTTAGGGCTTCTAAGCTAAGTTGCTTTTATTTTTGGGCCGTT
TTAAAGTTCGAGTCTTGTGCAACTCGTTAAGAAATGTGTATTCGTTGAAT
TCGAAAGTTTGAATGACCGAAGTGCAGAGGTAGTGCATTCGACTACGGTG
CATGAGATTTAGGGTTTAATGGGGGTTTAATCCCTCGCCTGGTATACCAA
AGATTACCCAAAAAGGTACAATTTTGTGCATAATATAATgcgaatttttg
atttttaccacAGCTTGAACCAGTCTTCCCCCTTACTACAATGCTGAAGG
AAGGCTCTACCGGTCCGTTTTTCGCTTGAATCTTCATCCATCATTGTAGT
AAGGGAGAGTGGAGTATTTCCGATAAAATTAAATGTGATTCTGAAAATTC
TCATAATTTAAGGgttctgaccatagtcggaaaattgatttcagtATTTA
TGTATTttagttatgttttaggttctttaatactttcaacaaagaattgc
ctttataaattgctttttaagcaaatcccttaaccctattcatactaggc
ttttaggggcggttcagaactaggggggggggggggttttcccgtaccac
cccttaacttttgctctagtgggtctttttggatgaaatNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNaaatttcacggcaaaagctcta
ttatttcaggagctattaccaatagtttgacttccgaacagaaagagccc
cccccctagtacgaatagggttaagagtaattaagaatttaattgcaaaa
atgatgttatgaactttaaaaagacgttaatgaTATGTTTGCATCACTtt
ctcttataaaaagtgctaagttttaatgggtaattaacgtttttgtttcg
aagtttttacaaactgtccgcaaaaaattgaactgttttaaatttttcgg
aaaaattttctaaattaatgcatcaaaagttatggctgtttttctatgaa
aaattgggatggaaaattgatcaaaaagcaCTCTTTtcaagatttagaaa
aatttgccagaaaaaaaagttttagttcgataaaagatacaccatctacc
gcaaaaaaattttcaaaatattttttctttgctgAAACTAAGCTCTTCCA
AATTTGAACTACTCTTCTTCataaaagtcttcattttcttcttcatcaaa
ttttctcattgcgattcttaaattttcagactcacggataattgggttag
cagaaaatgtataacatgccacagttttgtgggctacatcaagtagaact
ttatattttgtaaatggtaaatattaaaaattcactatggtcagagccct
gaAGCACGTAATTGTGTACATGATGCTTTATCTGCTCAATGCTTAGAAAT
TAAAGATGTGAATTAAGGGTATGTGGACCAACCGAGGGAGAAAGGGTGTG
CCCTACCACCCTAACCTTCGAGTAGACAACTATCGAAAGAGGCCGGCGGC
CGTTCCGATCACGATAGCAAATTTTTCTTGATAAATGCCTTTTCCAATAG
ATAATGAAAATATAGTTATAGTTGTTATTAAACCATGATGAGGAAGTCAT
TGTCATTGGAGCAGGTATATTTGCTAGTATACTGCTAGTGATGAACGAAA
AAAAGACCTACCAGCAGCTAAGAATTTGGCAATCGAATCGTAGATTCTTG
GAAAATTTGCATCGTACAGAAACTCCCCATCGCCTTTTTCTCTTTGTTCT
TTAAAATGCAGAAGATCGTTGATTTGGTTTTCCAGTAAGCCATCTTTTGA
AGCACACAATAATCCTGCTACGTCCTCCACAAATAGTTTACCATACTTTT
CAGACCATTCGTCTAAAAGGAAGCTAAACAGGTCTGTAATGGTGTTTGGT
AGACTCTCAATATACTGGGTCACTTTCTCGAAAATTCCAAACTTTCTCAA
CGCCTCACATGCAGCGATTAAGTACAATGGACTTTGACTTTTGGACAACA
ATTTCTCCATTTGATTTCCCAGAATCGGATCCTCATTTTCGGTAAGCTTC
TTATTAAACCTTTCAAGTGTTGCTCGGACCATTTCTTGCAAATCTTCATG
GCTCATGTTTTCGATGGGAAGTCGTTGTGCATCTGGTGAAACATGACAAG
CGTTCTGAAATGTCCCATTTTCTTGGTTTAATGTTGAGATCAtgaatttg
agatttttgggaGCTTTTTTTGTTGGCGGAAGCCACCACATATCCCAAGC
ACCTAAAAAAGTAAATAGATAACGCTTAAAGGAAATTGTGATACTTTTAA
AGCAGTCAGCATCTAGACTAATATTACTGTCTCCAAAATTGCGAGGTTTT
GTATTCTCACTTTTGAGAACACTGAacggagtgactgaagcgatttggaa
taacccgcagtatTGACCCGCAAATNAAAATATTTTTAAGGATTAtaaga
aatttttcatttaaagtagttaaaatctaaaagatgtttttaatattttt
cagtaTGATATTTCACATAAAAAAACAGAATAAACAAAGGAAAAACTTAC
TTCTTCCAAGATTTCACAAGCACTTTCCAGACTACCTGTAGAAACATCAT
ATTTTGATACCGTTCCTCTGTCATCACCAATAAGTAAAGTCTTGCTGTCA
GCTGTAAGAAGAACAACTGACGCTCGTCCATTTACCTGGTGGACTAACTC
TCCACTTTTTTGGTCAAATACACAAACTCTTTCCCACGCCATAATGGCTA
CTAAACCACCTTTTGAGCTCGTAACAGCACAGTCAATACCCCCTAGAGCG
TATTTAGCAAGCATCCGGTCACATTCCTCAGGTATGTTGGACCAATATAA
AGGGTACGCTTCCCCCTTAACTGAGGGCTCCATCCCTAGAGCCAAGGTAT
CTTTGGTGACGTATGAGGTTGGGGCTTGTGTTACAGCCATGTTAAGACAG
AAATTCGGGAATTCCCGAATATAGGATGTGTAGAGCTGAACAAACGAGGC
CCATTGCTTGAGAGCATCTATATCGTCAGTATTTGTGAGTGTTTCCAAGG
CAAGTGCGTATTCGTCACTAAGGCTTTGATGCTGCTTGGCAACAATGCGT
TCTTTAACAAAGTAGATATTCCTTAAACTcattttcaagctttccaaagG
CAAATCTTGATTTTGATGAGCTTTGAGTTGATGGTAGACCAGTTGTTCTA
GGGCGTGCTCGAAATATGCTGGTGGTTCCTCTTGAGGTGTTTCACGGCAT
TGCTTAGAGACAATAtcttcgaaaaagtctctcatcCACACGTGTGTTTC
TTGTTCGAATAATTCCGTCATAAATTTTCGGCGCACGGTATATTTGAGCT
GGACGTGGAAGAATCGAAGATAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020837-exon-sc0000371-1491911889:121025..121694 | TCONS_00020837-exon-sc0000371-1491911889:121025..121694 | Clytia hemisphaerica | exon |
| TCONS_00020837-exon-sc0000371-1510915933:121025..121694 | TCONS_00020837-exon-sc0000371-1510915933:121025..121694 | Clytia hemisphaerica | exon |
| TCONS_00020837-exon-sc0000371-1575043694:121025..121694 | TCONS_00020837-exon-sc0000371-1575043694:121025..121694 | Clytia hemisphaerica | exon |
| TCONS_00020837-exon-sc0000371-1491911889:126061..126198 | TCONS_00020837-exon-sc0000371-1491911889:126061..126198 | Clytia hemisphaerica | exon |
| TCONS_00020837-exon-sc0000371-1510915933:126061..126198 | TCONS_00020837-exon-sc0000371-1510915933:126061..126198 | Clytia hemisphaerica | exon |
| TCONS_00020837-exon-sc0000371-1575043694:126061..126198 | TCONS_00020837-exon-sc0000371-1575043694:126061..126198 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000371 | supercontig | sc0000371:121025..126198 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015943 | WD40/YVTN_repeat-like_dom |
| IPR011044 | Quino_amine_DH_bsu |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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