TCONS_00020841 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020841
Unique NameTCONS_00020841
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2772

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020841 ID=TCONS_00020841|Name=TCONS_00020841|organism=Clytia hemisphaerica|type=transcript|length=2772bp
ATTGAGTTCTTGCATCATCTCGAAGTGCGTTTCCCACAATGGTCTGAGCT
CATCTGGTATCTTGTCATCCCAGTCGAGGTTTAAGTGAACAAGTTCTTGC
AGATCCATCTTCATAGCACTGACGATTGGTGTCACCTTTCCTGTTAAATC
GAAGATCTCTGCTACCTTGGATGAACAATGTCTGCGAGTGAGTTTGGAAG
GTATGATGTTGACGGTGTTTAATGGCTTCTTGCNTGGATCAAAGTTACTG
ACATTTGTGGCAACAGTTCGTCTTCTACATATGATTTTGAGGTTGTTAAT
TGTCCTTGTCAAGCTTTCAATGGTGCAGAATGTCAAAGGAGTGATAATGG
AACTATTAGCTGTGTTTGCCCTGCTGGATGTACCGGAAAAAACTGTTCCG
TTGGCGAAGAGTGCAAATCAAAAACATCCCCAATGAAACTCAACTGCtat
caaaataaaatggaaattGGTTTAGAATTCGATCACCTATCACGTCACTC
CTTACCTTATATCGTCAAATTTCACGGTGATAATAACTGCCCAACATTAA
ATGCATCTTCAGCATCTTCAATATACGATGGACGTCTATGGATGAATGCA
AATTACAGTGAATGTGGTATCAAAGCTTTTGAGAGCGGAAACAAACTAGT
GTTCAAACAAATCGTTGAAGTTGTGTacggaaaacaaatgaaatcttTAG
ATGTTTATCGANTGGAAACAaactactctaaggtcccgaatagacgtccc
cccccgcttattaattttcgaaaatatttcggacccccccgttcttatta
ggacccccccgtttattagtttttaagaatattttcagctgtcaaagaga
aggacccttattttgctctaaatagcctgattttagcctttatttaccta
aatattttcagaccccccccgtttattcagacccccccgtttattatatt
ttgcaaaaatttcggacccccccttTTATTCTGACCccccctactattcg
ggaccttagagtagtgTTCAAACAAATCGTTGAAGTTGTGTacggaaaac
aaatgaaatcttTAGATGTTTATCGACATTTTATTGATACTTATAACGCT
TCTTGTTCGATTGATCGAAATGTTACACATAAATTAAACATCAATGTTAA
AGAACAGGAGACTATCGACAAGGAAACAGAGGAGAACGccgatttcaaat
tcaaatttagtGCTTTCAAAGACGATAAAACGGCGATCAGTGGTTTGGTC
TTTCTTGGAGATTTAATCCATTTCGAATTGGAGTTACTTTCCAACTCTAA
AGTTGTGAAAACGTCTCCTCAAGATTGTTTTGCTACACGTTTGGATGGAA
CAGGACGCTTCGATCTTATTAAAGATAGATGTGTAGGTGATGATGAAACA
CTCGCGATCACATCGTCCAATCAACAAACACACATGTTCTCGTGGAGAAT
GGAAGCTTTCAGATATTTTGGAAATTCTGACGGTATTGTAATCACCTGTC
GAGTTTTGGTTTGTCGAAATAATCCTTTTGATCAACTGACAGATGAATGT
AAGAGATGTGGACAAACTACCGTCAGACGAAAACGAAGAAATGATGTAGA
TGAAGAGGAAAAAGATGTTTTGAGCGAAACTTCGCTGAAGAGCACTCCCA
TTTTCCTTGTTGAAAGACCAGACAAAGGCGAAAAGGCCAAAGTATCTGGT
GATGAAGGTCTCGATCGCACTGAAAAGATGgcaatcatttttgtttgtGG
TGTTGTGGCATTGGTTCTTTGTGTTGCCATCCTCAAAAAGGTTTTCTTCA
AACCTCAAAGTGGAATGCCAGAAAAAACTGCTGTTGGATAAAGAAATACT
TTCTTGTAGCCTACCCCATAGGATGAATGGAGTATAAATTAATTGTATGC
GtcaagggataatcagatggtttgagatgttGTGTCGAGAAACGACTATT
TGAAACGGTTCCTACATTAGAACACCCCTTTTTCACTCTGACCAACTGGG
ACCTCTTCATTACGGAAAAATTGGCTTAAacatcgtccccagtggaaagt
tttactctaatttttgtccccccctaaaataaatcaaatatttttttggc
tCGAAAACGACGGAATTTAAATCCCTAACAATAACATGGGAATGTCGGAT
CCTCcgtcgagtttcagtccgttatttttacccccactggctaaTAAATC
CTACCGGTCCTGGAGAAGGTGAAAAGGGGATGTGTTACAATTCTACTGTT
TTCttgctaaaattaaaaaaaattataacttgACTATGTCAACTTTCCAA
AAGAGTTTGACAAAAAGATTCGGAAGTTTTTCTCAGGACACAGTGGAATC
CATCTACCAGTAAAAGATCTCAAACCGTCTGATTTATCCCTTTAATGTTT
ATGTATGTAAGATTAAGTAATCGAGGTGTCTTTATCTAACTAAGTTTTGT
TTGCTGATCAATAAATCCGAATTTACTCTAGATTAACATTCTAGATCTAA
GCATTCTTTTTGTATGTGCCTGTATACCATTTTTCTATGTAAGATTCTCT
GTACTAATTAGAAAAtcagaaatctcaaaatttatttttaaatgaacTAA
ACTAATTTTTGTAATAGACTTTGTGTATTGAACCATAACTTTTATTCAAG
ATGatgtatgaaaaaaattttccttttaaagttgaatattgtgtttgttt
caatttgaaatCCTTATCCAAATCTTTTTAGACATGATCCAAACAAATCA
TCGTATTAGAGGAAAATATATC
Run BLAST on NCBI

transcript from alignment at sc0000371:230534..236940+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020841 ID=TCONS_00020841|Name=TCONS_00020841|organism=Clytia hemisphaerica|type=transcript|length=6407bp|location=Sequence derived from alignment at sc0000371:230534..236940+ (Clytia hemisphaerica)
ATTGAGTTCTTGCATCATCTCGAAGTGCGTTTCCCACAATGGTCTGAGCT
CATCTGGTATCTTGTCATCCCAGTCGAGGTTTAAGTGAACAAGTTCTTGC
AGATCCATCTTCATAGCACTGACGATTGGTGTCACCTTTCCTGTTAAATC
GAAGATCTCTGCTACCTTGGATGAACAATGTCTGCGAGTGAGTTTGGAAG
GTATGATGTTGACGGTGTTTAATGGCTTCTTGCNTGGATCAAAGTTACTG
ACATTTGTGGCAACAGTTCGTCTTCTACATATGATTTTGAGGTTGTTAAT
TGTCCTTGTCAAGCTTTCAATGGTGCAGAATGTCAAAGGAGTGATAATGG
AACTATTAGCTGTGTTTGCCCTGCTGGATGTACCGGAAAAAAGTACGAAA
AAAGGCTTGATCACTAATAGTTCGCTCTTATTAACTCGTTCATGAGTTTG
CTTAGTTTGAATagaccttatcagagtttttgatttttctaaaacagcga
tgcattgtgggattatttcgggggtattacaatagaaatctcttaggaat
tcctcgagggaattctattgaaATACCCgggaaacaatcccacaatgcat
cactgtttaaaaaaatcaaaaactactctttattattcaaatctttctct
aattcgatcaaAGTTTTTGAtcccttgaaaatcgatttAGAGAGAATCAA
CTGTACTTCCAAAGTTGAAAATTATTCCACTATTAGTTTTGTGCGAAGAA
CGTCTCTTTACCACAAAACCATGCCACAGATCCGGAGGACCCCGAGCCTC
ACATGTAAAAAATACCCTAGGATTTAAACCCTACTGGATAATTAAACTAT
AGttttatccccattcgaaattggGCGGCAAAAACTACACTCCAAAACCA
AAACCACCcccgtttttcttttttgagatAGAAACAATGATTTTCTGTCC
CCTTTCGGACTTTCATCCCCacagagagaaaaaaatccttTAGCAAAAAT
TGCCTTGACTTTGAGTTTTTTCATTTACTAAGGTCCCACTCAACTAAGCt
actttcccagctggcacacaacgttgtttcaacgttaatctaacgttcac
aacgtccatttaacgttagatgagttgtgtgccagctaggtTGAAATAAT
TAATAAAGAATAGAATATgatcttcaaattcaaaataccCCAAAATACCC
ATAAAGAAACTCTGtttttcttccaaaaatttttttcgtaaTGGATAAGT
AAGTAGCTTGACATGCAAAATGGAATGTAATTTCTCAATTTAACTcaatt
ctcttttcttttccaGCTGTTCCGTTGGCGAAGAGTGCAAATCAAAAAGT
Aaggaaaaactaattttttgattttctaaaagttcattttggcttgaagt
ttagttaaaataattttctttaacGTGGTTTCAATATGGTAGTCCAGCTG
GCGacgacgttgttttaacgttcatctaacgttatatagacgttATGAAC
Acaagataaacgttgaaacaacgttgtgtgtcagaacggagcagttccgt
tccgagcGAAACTGTTTCGaactgttttgctttgtaacgtcttcttattt
gatgacgttttcaattttgacgttCACGGAACGGAACGTATCGTGTGAAC
TTGGTCTTAAAGCGATAGACTTTAGTTTAAAattgattattattattatt
attattattttcattattcGTACCTTATTCTGTCGAGTACAAATTAGTAA
AGATTTTCTCAATCCAATCTTAGCACCAGTCACTTCAAACAGTGAACTTT
TTGTTAAACTTTAATGTTATGTCTAGAAATAATGGCCTCTTCTAATAATG
GCCATTCATATAATCGATTTTCAGAGCTACATTGCTCCAAATGAGACAAG
AGGCGAATCGCGCATACAGGATTCGAAGCTACTTAATTCCTTTAAGTTGT
GCAGATCACCTGTTTCTTATGTTGGTTGGCTTAAATGTCATTTTTACCAC
CAGAATTCGCCAAAAATACCcatcagctggcacacaacgttgtttcaacg
tttttctaacattcacaacgtccattaacgttaaatgaacgctgtgtgcc
agctgggtagtgTTAAATTCAAACTGTCATTCAAAATGTGGTGATCTAGT
CTTCGGCTAGATTATCACATTTGATCTTACCCCTAAGGACCTAAGGTATT
TATGCAAATATTGGACAGAGATAGAGGTGcataagtttttttatttatca
atgaaaaaatttcaaaatttcaaaaagagaaTCAGTGGATTGGAATTTTC
CTTGAAaggaaaaatgtgaaaaaagaatTCACACATCCCCTACGGTGTTT
AGGTTCTGCAAAACCTGGATGGATAGAGATGCATaagttttaacattttc
aatatttcaactTTCAATAGCATCCCCAATGAAACTCAACTGCtatcaaa
ataaaatggaaattGGTTTAGAATTCGATCACCTATCACGTCACTCCTTA
CCTTATATCGTCAAATTTCACGGTGATAATAACTGCCCAACATTAAATGC
ATCTTCAGCATCTTCAATATACGATGGACGTCTATGGATGAATGCAAATT
ACAGTGAATGTGGTATCAAAGCTTTTGAGAGCGGAAACAAACTAGTGTTC
AAACAAATCGTTGAAGTTGTGTacggaaaacaaatgaaatcttTAGATGT
TTATCGANTGGAAACAaactactctaaggtcccgaatagacgtccccccc
cgcttattaattttcgaaaatatttcggacccccccgttcttattaggac
ccccccgtttattagtttttaagaatattttcagctgtcaaagagaagga
cccttattttgctctaaatagcctgattttagcctttatttacctaaata
ttttcagaccccccccgtttattcagacccccccgtttattatattttgc
aaaaatttcggacccccccttTTATTCTGACCccccctactattcgggac
cttagagtagtgTTCAAACAAATCGTTGAAGTTGTGTacggaaaacaaat
gaaatcttTAGATGTTTATCGACATTTTATTGATACTTATAACGCTTCTT
GTTCGATTGATCGAAATGTTACACATAAATTAAACATCAATGTTAAAGAA
CAGGAGACTATCGACAAGGAAACAGGTAGGCACTTTACGtgtagcacaca
acgttgttttaacgttcatctaatgtttacaacgtccatataacgttaga
tgaacacaACAACGTCGGGTGCCATCCAGGTTTCTATACTTGTgatgcat
atttatttttaatgtatgTTTTTATGAGGCCCTCGAAACAGTTTGCGGTT
TTCTTGATGTTGTACTAGAGACTTTCTTCTGGCGAGGAAACAGGTAAGTA
CTTTACAGGGGGGTTCATGGTTGACGGAGGAgtggaatcggccctttttc
gatcggagtggcggaatttgacGAAAATTTGACAGAATTTCGGAAATTGA
ATCTGCTGACGGAGatggaaaattagacaattttagtgtggaaaaacgga
atttagcaaatgtttttgcaatttttcggaattatggcaaaagatattca
aatcaCGCAGAAATTTTTACAAAGAAAGCTTGAActtcaaaggaatcttc
gatgGCGGAGTTCTTATTTTCATcctgaaaattgtaaaaaatcaccaaaa
gtCCTCCCTTtccagatacacatcttgaaaattagtaaaatttGGGACCC
TaccagatatcttcagagcctaaaaaagggatcCTGACTAGCAACATATC
CCCCCGTACCCAATTATGCTTACCTTTTCTGAAGGTGAATGGTAAAATAC
GATGGCTTTTTTACGGAAAAACTTAATGAAGAACTANccgtacccaattt
tgcttACCTATTTTGAAGGTGAATGGTAAAATACGATGGCTTTTTTACGG
AAAAACTTAATGAAGAACTAACTCGGCAAAAAGTAATCTAGGGGTTCTCG
ATTTGgcgaaaattaatttgattCAATAATACAGTGGGACGTCCAATTTA
CGGACACCACGGGGAAAAGGGTGGTTAGTGTCCGCTATAGTGTCCACTAA
TAAGTacatatttcaaacttttttttattcaacagAGGAGAACGccgatt
tcaaattcaaatttagtGCTTTCAAAGACGATAAAACGGCGATCAGTGGT
TTGGTCTTTCTTGGAGATTTAATCCATTTCGAATTGGAGTTACTTTCCAA
CTCTAAAGTTGTGAAAACGTCTCCTCAAGATTGTTTTGCTACACGTTTGG
ATGGAACAGGACGCTTCGATCTTATTAAAGATAGGTAAACATATATTTAT
AGTAGAGTCAAAGATGGGTTTTGCTATTTAtcataaaaacctttcttttt
ggAGGAGATCTAAGTGATATAATTTTCGCGAACTCtttaaaagaaatgtt
ttgtgaaaagaaaaatctccacgaagaaaaacaataaaaagtttAAGCGC
CGTTTCAGCAAATTGTTCGTAAGTGTTTCGCCTTAATTTCTTTATTGATG
GAAACCTTCACCAACAGAGGCAACAGTCGCGAAAATCGACAATAAAATAA
CCAGAAAgctttcatcaaaaaatatatttttgagaattttttttagctTT
GGGTTTATTTATTATATACTATAAGTGATTTAAAGTCATTCAATCAGCAA
ATATTCTTATCATTTTTTTAGATGTGTAGGTGATGATGAAACACTCGCGA
TCACATCGTCCAATCAACAAACACACATGTTCTCGTGGAGAATGGAAGCT
TTCAGATATTTTGGAAATTCTGACGGTATTGTAATCACCTGTCGAGTTTT
GGTTTGTCGAAATAATCCTTTTGATCAACTGACAGATGAATGTAAGAGAT
GTGGACAAACTACCGTCAGACGAAAACGAAGAAATGATGTAGATGAAGAG
GAAAAAGATGTTTTGAGCGAAACTTCGCTGAAGAGCACTCCCATTTTCCT
TGTTGAAAGACCAGGTATGTGTCGCTCTCTCTCATTATTTCTCTTCTTAC
ATGTTGTAAATTGTCGATTTGAGTGATATTTCATTTCCTGGATTAAGTTT
CCACTGACTTTTCTGAGATTTTTCCGCTAAATAATGTTTTCAAGGCGGTT
GTTGCActcaatgaattttgaaaaggcCCAATGGCATAATTTAAAAACGT
ACTATGCACTTATCATGCCTTTTACTGATGCATATTTCCTGACTGTCCCC
CAGCTCTCGGACTATAATTTTAGTCAACTCTGAtgttattgttttattta
ttcTAGACAAAGGCGAAAAGGCCAAAGTATCTGGTGATGAAGGTCTCGAT
CGCACTGAAAAGATGgcaatcatttttgtttgtGGTGTTGTGGCATTGGT
TCTTTGTGTTGCCATCCTCAAAAAGGTTTTCTTCAAACCTCAAAGTGGAA
TGCCAGAAAAAACTGCTGTTGGATAAAGAAATACTTTCTTGTAGCCTACC
CCATAGGATGAATGGAGTATAAATTAATTGTATGCGtcaagggataatca
gatggtttgagatgttGTGTCGAGAAACGACTATTTGAAACGGTTCCTAC
ATTAGAACACCCCTTTTTCACTCTGACCAACTGGGACCTCTTCATTACGG
AAAAATTGGCTTAAacatcgtccccagtggaaagttttactctaattttt
gtccccccctaaaataaatcaaatatttttttggctCGAAAACGACGGAA
TTTAAATCCCTAACAATAACATGGGAATGTCGGATCCTCcgtcgagtttc
agtccgttatttttacccccactggctaaTAAATCCTACCGGTCCTGGAG
AAGGTGAAAAGGGGATGTGTTACAATTCTACTGTTTTCttgctaaaatta
aaaaaaattataacttgACTATGTCAACTTTCCAAAAGAGTTTGACAAAA
AGATTCGGAAGTTTTTCTCAGGACACAGTGGAATCCATCTACCAGTAAAA
GATCTCAAACCGTCTGATTTATCCCTTTAATGTTTATGTATGTAAGATTA
AGTAATCGAGGTGTCTTTATCTAACTAAGTTTTGTTTGCTGATCAATAAA
TCCGAATTTACTCTAGATTAACATTCTAGATCTAAGCATTCTTTTTGTAT
GTGCCTGTATACCATTTTTCTATGTAAGATTCTCTGTACTAATTAGAAAA
tcagaaatctcaaaatttatttttaaatgaacTAAACTAATTTTTGTAAT
AGACTTTGTGTATTGAACCATAACTTTTATTCAAGATGatgtatgaaaaa
aattttccttttaaagttgaatattgtgtttgtttcaatttgaaatCCTT
ATCCAAATCTTTTTAGACATGATCCAAACAAATCATCGTATTAGAGGAAA
ATATATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011687XLOC_011687Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020841-exon-sc0000371-1491911889:230534..230925TCONS_00020841-exon-sc0000371-1491911889:230534..230925Clytia hemisphaericaexon
TCONS_00020841-exon-sc0000371-1510915933:230534..230925TCONS_00020841-exon-sc0000371-1510915933:230534..230925Clytia hemisphaericaexon
TCONS_00020841-exon-sc0000371-1575043694:230534..230925TCONS_00020841-exon-sc0000371-1575043694:230534..230925Clytia hemisphaericaexon
TCONS_00020841-exon-sc0000371-1491911889:231850..231881TCONS_00020841-exon-sc0000371-1491911889:231850..231881Clytia hemisphaericaexon
TCONS_00020841-exon-sc0000371-1510915933:231850..231881TCONS_00020841-exon-sc0000371-1510915933:231850..231881Clytia hemisphaericaexon
TCONS_00020841-exon-sc0000371-1575043694:231850..231881TCONS_00020841-exon-sc0000371-1575043694:231850..231881Clytia hemisphaericaexon
TCONS_00020841-exon-sc0000371-1491911889:232954..233708TCONS_00020841-exon-sc0000371-1491911889:232954..233708Clytia hemisphaericaexon
TCONS_00020841-exon-sc0000371-1510915933:232954..233708TCONS_00020841-exon-sc0000371-1510915933:232954..233708Clytia hemisphaericaexon
TCONS_00020841-exon-sc0000371-1575043694:232954..233708TCONS_00020841-exon-sc0000371-1575043694:232954..233708Clytia hemisphaericaexon
TCONS_00020841-exon-sc0000371-1491911889:234669..234867TCONS_00020841-exon-sc0000371-1491911889:234669..234867Clytia hemisphaericaexon
TCONS_00020841-exon-sc0000371-1510915933:234669..234867TCONS_00020841-exon-sc0000371-1510915933:234669..234867Clytia hemisphaericaexon
TCONS_00020841-exon-sc0000371-1575043694:234669..234867TCONS_00020841-exon-sc0000371-1575043694:234669..234867Clytia hemisphaericaexon
TCONS_00020841-exon-sc0000371-1491911889:235255..235547TCONS_00020841-exon-sc0000371-1491911889:235255..235547Clytia hemisphaericaexon
TCONS_00020841-exon-sc0000371-1510915933:235255..235547TCONS_00020841-exon-sc0000371-1510915933:235255..235547Clytia hemisphaericaexon
TCONS_00020841-exon-sc0000371-1575043694:235255..235547TCONS_00020841-exon-sc0000371-1575043694:235255..235547Clytia hemisphaericaexon
TCONS_00020841-exon-sc0000371-1491911889:235840..236940TCONS_00020841-exon-sc0000371-1491911889:235840..236940Clytia hemisphaericaexon
TCONS_00020841-exon-sc0000371-1510915933:235840..236940TCONS_00020841-exon-sc0000371-1510915933:235840..236940Clytia hemisphaericaexon
TCONS_00020841-exon-sc0000371-1575043694:235840..236940TCONS_00020841-exon-sc0000371-1575043694:235840..236940Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000371supercontigsc0000371:230534..236940 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.980716	0.922636	1.02017	0.78898	0.613836	0.950614	0.48847	0.744414	0.868362	1.40228	0.373147	0.65392	0.265364	0.50198	0.138633	0.10973	0.0104801	0.290537	0.205835	0.246365	0.851701	0.708311	11.9342	12.0371	28.7293	30.8359	48.046	57.8454	2.97708	2.57048
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020841 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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