TCONS_00020852 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020852
Unique NameTCONS_00020852
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1008

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020852 ID=TCONS_00020852|Name=TCONS_00020852|organism=Clytia hemisphaerica|type=transcript|length=1008bp
AGAGGAATACACAGGAAAATGTGGAGTCAGAGAAAAAAAGACACGAATTG
TTGGAGGAACAACAGCTAAACCAGGGGAATGGCCTTGGCAGGTCAAAGTT
GGAGGGTGCGGTGGCACTCTTGTTTCTGATCAATTTGTGGTGACAGCGGC
TCATTGTTTCGATCGCAGCAAAGATCCTGACGACTATAAAGTTACTGCAG
GTGAACATGACAAATACGAAAAGGAACAATGGGAACAAAAAATGGAAATC
GAAAAGATTATCATTCACCCAGCATATGGAAAACTTGTCTCTAATGATGC
AGACATGGCCTTGCTTAAACTGAAGAAGAAAGTCTCGTTTAACCAACGCG
TTCGACACGCATGCGTAGCTGATGATTTTGTTGATATTGGTTTAGATTCG
GAATGTTGGGTGTCTGGTTGGGGCGCTCTTAAATTCAACGGGCGTTCTGC
AAGGtaTTTGCAACAAGCAAAATTACCGTTGATCGATCACAAAGAATGTG
TTGCTACCATGGGTTACCGAAGTATCACTGATAACATGTTATGTGCAGGC
TTCAAAGATGGCACTAAAGATTCTTGCCAAGGTGATTCTGGCGGTCCTTT
AGTTTGTCGGAAACAAGATGCAGTGACTGGTGAATCGCAATGGTATCTGT
GGGGAGTTGTTTCATGGGGTTATGGTTGTGCAACTCAACGTTATTACGGG
GTCTATACAAAAGCTCACAATTTCCGACACTGGATTGCAGATGTGATGAg
aagatattaaaaaaaatcttttggttattatagattaaattttgaagata
ttgttatatttttcagtaaattcttttatcaaaaaatcatAAGTATTGTT
TCACAAAGATTCTTTTTCTCTGACTTCTGTTCCATAATATATGGGTGGGC
CTTCACTAGTTGTAGAGAAGATTTTTTTCGGGAAATGATTTACAGCATAT
CGCAAAAAAATATTCTCTTCTAGTTGAATCACTGTCAGTGTTAAACACAA
GCCTGTTA
Run BLAST on NCBI

protein sequence of TCONS_00020852-protein

>TCONS_00020852-protein ID=TCONS_00020852-protein|Name=TCONS_00020852-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
EEYTGKCGVREKKTRIVGGTTAKPGEWPWQVKVGGCGGTLVSDQFVVTAA
HCFDRSKDPDDYKVTAGEHDKYEKEQWEQKMEIEKIIIHPAYGKLVSNDA
DMALLKLKKKVSFNQRVRHACVADDFVDIGLDSECWVSGWGALKFNGRSA
RYLQQAKLPLIDHKECVATMGYRSITDNMLCAGFKDGTKDSCQGDSGGPL
VCRKQDAVTGESQWYLWGVVSWGYGCATQRYYGVYTKAHNFRHWIADVMR
RY
Run BLAST on NCBI

transcript from alignment at sc0000371:139641..144118-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020852 ID=TCONS_00020852|Name=TCONS_00020852|organism=Clytia hemisphaerica|type=transcript|length=4478bp|location=Sequence derived from alignment at sc0000371:139641..144118- (Clytia hemisphaerica)
AGAGGAATACACAGGAAAATGTGGAGTCAGAGAAAAAAAGACACGAATTG
TTGGAGGAACAACAGCTAAACCAGGGGAATGGCCTTGGCAGGTAAGTTTT
ACCCCCGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCCCTTAGCGGGACTAATTTGACCAAT
TTTGACCAAATTTCGATCTTTCAGGGGGTANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGCCTAAGTC
CCCCCCCCCCCCGTTTTACCATACCTGCATCAGTAAAGTAAAAGATACCT
CCAGATCGTACCTCCTGATCTGAATGAACTGAATTTAAAAAGGACTGAAA
TTTTCAAGCTCGAACATTTTCATTATTCTAATAGCGCAAGACAGATACCA
CGTCCATCAGTAAAATCAAAAAGTGGTGGAAGTGGCTTTGGTTACGAGAT
TGTGAAATTCCATAATGTTTTATATTTTTCCAGTATAGAAAACCAAGGGG
TGGCCAATTCTATTTCTTCCTTTCAGTTTTGTTACAATGTGTGCACATAA
CTTTAACTTCTATAGCTATATAAATGTATACAAAAGAGTGTTAACTTGCT
ACTTGTCTCTCCCTCAGGTCAAAGTTGGAGGGTGCGGTGGCACTCTTGTT
TCTGATCAATTTGTGGTGACAGCGGCTCATTGTTTCGATCGCAGCAAAGA
TCCTGACGACTATAAAGTTACTGCAGGTAACCCATCTGGCACATAACGTT
GTTTCAACGTTCACCTAACGTTATATGGACGTTGTGAACACAACGTTGTA
TGCCAGCTGGGAAGGCTCTTCGTTTATTTTGTTCTTCCACAGCCGTCAAA
GGATTGAGAGCTTCTCTGTAGCAAAGCATCGTGACTTACGTTAATATAAA
CTTACATAAATCTATCGTAAAATAGAAAACAAAATGACAGATTTTAGTCT
ACTAGATTTGAGTGACGTAACAAGCAATTTTGGGGACAATATTTTTGAAA
AAAAGACTTTTGACAAAATTAATTAACTTAGATATTAACCTCGATGATAA
TAAAGCTCCAGTTCTGTGAATTTCAGAAGCTATTTCCAGTTTTACGATGC
AGGTCACAAAAGGAAATTAATGTAGAAAAGTCACAAAAAAACAATCGGGT
AAAACTATCTGATTGGCTGAGATAGAAAAATTACCTCATACTTCAGACAT
TTTGAAAAGCGTATGTTTATGTGAGCAATTTTCAGCTGTAATTGACATTT
TTTTCTGCTAATAGGAAATTCGTGTCTCGGTCTTTCACTAATTTTCCAAG
CGCAGCGTCCGAAATAATTGTTGTCATGCGTTAAGTTAGAAAAATTACGG
TAGCCGATATTACATCAACTTTCTTTTTAGGTGAACATGACAAATACGAA
AAGGAACAATGGGAACAAAAAATGGAAATCGAAAAGATTATCATTCACCC
AGCATATGGAAAACTTGTCTCTAATGATGCAGACATGGCCTTGCTTAAAC
TGAAGAAGAAAGTCTCGTTTAACCAACGCGTTCGACACGCATGCGTAGCT
GATGATTTTGTTGATATTGGTTTAGATTCGGAATGTTGGGTGTCTGGTTG
GGGCGCTCTTAAATTCAACGGGCGTTCTGCAAGGGTAATTCCTGACGAAA
TTATTAACTTTTTATCACCGTACATAATTTTACCCTAATTTCTTTTGTCT
TTACCATAAAAACCTTAGAAATCTTTTCAAGACGCGTGTTTAAAGAAAAG
TGGTAATCAGAATATTTGCTTGAAACAAGAATTTCAAAGATTTTGTATTT
GGGAACTACAGCTTTTTTTCAAAAATTGATCATTGAGGAAAACTTATGTA
AGAAAAAACTATTGAAAATGTCCAAAGATGATGATAAACTGAGGATTGAA
TGAAGCAAGATCCAATCCAATTCTGGACTTTTACTTGTCTTGCTTATATG
AAGACAAATAACATGTTTTTTCTAACATAAGCATAACGTTTATAAGCATA
CACAAACTCAGTTTTTTGTACGAAATACATGTTTTTTTCTTTTATAAGCA
TACGCAGGCTCAGTTTTTGGTACCCAAACAATGGATCTATTGTTTAAGAA
GAATAGAATGCTAAAGCATAATGTGAGCCTGATATAGGGGCAAATACTTG
CCNAAGCATACACAAATGGATCTATTGTTTAAGAAGAATAGAATGCTAAG
CGAGCCTGATATAGGGGCAGACACTTGCTTATAAAAAAAACATGTAGCAC
ATTTTGGAACAGTGGGTTTAACATATCAAGACAAAAATAGGCGCAGTTGC
AACTTCTCTTTATTTTTTTAAGTATTTGCAACAAGCAAAATTACCGTTGA
TCGATCACAAAGAATGTGTTGCTACCATGGGTTACCGAAGTATCACTGAT
AACATGTTATGTGCAGGCTTCAAAGATGGCACTAAAGATTCTTGCCAAGG
TTATTATTTATATATACACCCCAGCCTGCACACTACGTTCTTTTAACGTC
TATCTAACGTTCACAACGTCCATATAATGTTAGATAAACGTTGAAATAAC
GTTGTGTACCAGCTGGGAACCCTACACCCTTGTCTCACAGCCCCGGTGGA
ACTTTTTCCTCAGTGGGGATAAGAATTCCTATTTAAATCTCAAAGGCAAT
AGAAATTTCATTGTTCCAAGGTGAGAGCTCTACTGAGAGCTATTTGGGTC
CCTTAGAACTGAAAGGGGGGCACATAGTGCCCCCCGTGGATAACTTAGGA
TAGGAACATTATTTGGTCATGAAATTTGGTACTGCAATGCTTAAACCTAT
AACAAACAAATTTATCAAAAAATATTTTTGAAAATTGAATGCAATTTTTG
ATGACGTCATCAATTGTATCAACAATTGGCAAAAATCACCCAAAAGACTC
AAAAAAAAAGATGTTTCTTAAAATTGCTATTGAAACGGATGGAGAAACAC
ATTCTCCTTCATTTTGCTTTTATTTGGAAGCTTTTACAATGCAGTAAATG
AAAATTAAAATCTAAATCAACAATTTTGTCGTGACGTTCTACTATAGCGC
GCCAAAACCGAAGAAAATGTTTTCAACTTTCAAAACCACGTAAAATCAGA
ACATTTCAACTTTTTCAAGTTGGTGATACTTTTTTTGTCATATTTATATT
TATTTGTTGCTGCTAATTCTCCTGTAAGATGAAATAGAAGCAATACAAAT
GAAATGGACAATTAAAGTTTACTTGGTAACATGTTATAGTATCTTGGAGT
AAGCACATAAAAAAGAGCAAAATAGCCTGCGCTGCAATTGTGCGATGGTA
GTGGTCACCGACAAACCTGTCATTGGGACTAAAATAATTGACCAATGAAA
TAATTTTTTGAACCAAAACATTCCCCATAAAATTCGATGAAAAGTCATAA
AATTTCAGCTTTATAGATAGCCTCACTAGTTAAAAAATGCTAGCCAATTT
TCTATCAGTAGGTAGGGTTAAGTGGTTAAGTGGTTGGTGATGGCTTCGGA
GTACAATTTTCAAACATTGGATTTTGAATGGGGATGAAATCTTGAATTAA
AGAAGATAGTTAGATATACCTAGCATTCTATCATCCCCATTATTTTTTCA
GGTGATTCTGGCGGTCCTTTAGTTTGTCGGAAACAAGATGCAGTGACTGG
TGAATCGCAATGGTATCTGTGGGGAGTTGTTTCATGGGGTTATGGTTGTG
CAACTCAACGTTATTACGGGGTCTATACAAAAGCTCACAATTTCCGACAC
TGGATTGCAGATGTGATGAGAAGATATTAAAAAAAATCTTTTGGTTATTA
TAGATTAAATTTTGAAGATATTGTTATATTTTTCAGTAAATTCTTTTATC
AAAAAATCATAAGTATTGTTTCACAAAGATTCTTTTTCTCTGACTTCTGT
TCCATAATATATGGGTGGGCCTTCACTAGTTGTAGAGAAGATTTTTTTCG
GGAAATGATTTACAGCATATCGCAAAAAAATATTCTCTTCTAGTTGAATC
ACTGTCAGTGTTAAACACAAGCCTGTTA

Coding sequence (CDS) from alignment at sc0000371:139641..144118-

>TCONS_00020852 ID=TCONS_00020852|Name=TCONS_00020852|organism=Clytia hemisphaerica|type=CDS|length=3795bp|location=Sequence derived from alignment at sc0000371:139641..144118- (Clytia hemisphaerica)
GTGATTCTGGCGGTCCTTTAGTTTGTCGGAAACAAGATGCAGTGACTGGT
GAATCGCAATGGTATCTGTGGGGAGTTGTTTCATGGGGTTATGGTTGTGC
AACTCAACGTTATTACGGGGTCTATACAAAAGCTCACAATTTCCGACACT
GGATTGCAGATGTGATGAGAAGATATTAATATTTGCAACAAGCAAAATTA
CCGTTGATCGATCACAAAGAATGTGTTGCTACCATGGGTTACCGAAGTAT
CACTGATAACATGTTATGTGCAGGCTTCAAAGATGGCACTAAAGATTCTT
GCCAAGGTGAACATGACAAATACGAAAAGGAACAATGGGAACAAAAAATG
GAAATCGAAAAGATTATCATTCACCCAGCATATGGAAAACTTGTCTCTAA
TGATGCAGACATGGCCTTGCTTAAACTGAAGAAGAAAGTCTCGTTTAACC
AACGCGTTCGACACGCATGCGTAGCTGATGATTTTGTTGATATTGGTTTA
GATTCGGAATGTTGGGTGTCTGGTTGGGGCGCTCTTAAATTCAACGGGCG
TTCTGCAAGGGTCAAAGTTGGAGGGTGCGGTGGCACTCTTGTTTCTGATC
AATTTGTGGTGACAGCGGCTCATTGTTTCGATCGCAGCAAAGATCCTGAC
GACTATAAAGTTACTGCAGGAGGAATACACAGGAAAATGTGGAGTCAGAG
AAAAAAAGACACGAATTGTTGGAGGAACAACAGCTAAACCAGGGGAATGG
CCTTGGCAGGTGATTCTGGCGGTCCTTTAGTTTGTCGGAAACAAGATGCA
GTGACTGGTGAATCGCAATGGTATCTGTGGGGAGTTGTTTCATGGGGTTA
TGGTTGTGCAACTCAACGTTATTACGGGGTCTATACAAAAGCTCACAATT
TCCGACACTGGATTGCAGATGTGATGAGAAGATATTAATATTTGCAACAA
GCAAAATTACCGTTGATCGATCACAAAGAATGTGTTGCTACCATGGGTTA
CCGAAGTATCACTGATAACATGTTATGTGCAGGCTTCAAAGATGGCACTA
AAGATTCTTGCCAAGGTGAACATGACAAATACGAAAAGGAACAATGGGAA
CAAAAAATGGAAATCGAAAAGATTATCATTCACCCAGCATATGGAAAACT
TGTCTCTAATGATGCAGACATGGCCTTGCTTAAACTGAAGAAGAAAGTCT
CGTTTAACCAACGCGTTCGACACGCATGCGTAGCTGATGATTTTGTTGAT
ATTGGTTTAGATTCGGAATGTTGGGTGTCTGGTTGGGGCGCTCTTAAATT
CAACGGGCGTTCTGCAAGGGTCAAAGTTGGAGGGTGCGGTGGCACTCTTG
TTTCTGATCAATTTGTGGTGACAGCGGCTCATTGTTTCGATCGCAGCAAA
GATCCTGACGACTATAAAGTTACTGCAGGAGGAATACACAGGAAAATGTG
GAGTCAGAGAAAAAAAGACACGAATTGTTGGAGGAACAACAGCTAAACCA
GGGGAATGGCCTTGGCAGGTGATTCTGGCGGTCCTTTAGTTTGTCGGAAA
CAAGATGCAGTGACTGGTGAATCGCAATGGTATCTGTGGGGAGTTGTTTC
ATGGGGTTATGGTTGTGCAACTCAACGTTATTACGGGGTCTATACAAAAG
CTCACAATTTCCGACACTGGATTGCAGATGTGATGAGAAGATATTAATAT
TTGCAACAAGCAAAATTACCGTTGATCGATCACAAAGAATGTGTTGCTAC
CATGGGTTACCGAAGTATCACTGATAACATGTTATGTGCAGGCTTCAAAG
ATGGCACTAAAGATTCTTGCCAAGGTGAACATGACAAATACGAAAAGGAA
CAATGGGAACAAAAAATGGAAATCGAAAAGATTATCATTCACCCAGCATA
TGGAAAACTTGTCTCTAATGATGCAGACATGGCCTTGCTTAAACTGAAGA
AGAAAGTCTCGTTTAACCAACGCGTTCGACACGCATGCGTAGCTGATGAT
TTTGTTGATATTGGTTTAGATTCGGAATGTTGGGTGTCTGGTTGGGGCGC
TCTTAAATTCAACGGGCGTTCTGCAAGGGTCAAAGTTGGAGGGTGCGGTG
GCACTCTTGTTTCTGATCAATTTGTGGTGACAGCGGCTCATTGTTTCGAT
CGCAGCAAAGATCCTGACGACTATAAAGTTACTGCAGGAGGAATACACAG
GAAAATGTGGAGTCAGAGAAAAAAAGACACGAATTGTTGGAGGAACAACA
GCTAAACCAGGGGAATGGCCTTGGCAGGTGATTCTGGCGGTCCTTTAGTT
TGTCGGAAACAAGATGCAGTGACTGGTGAATCGCAATGGTATCTGTGGGG
AGTTGTTTCATGGGGTTATGGTTGTGCAACTCAACGTTATTACGGGGTCT
ATACAAAAGCTCACAATTTCCGACACTGGATTGCAGATGTGATGAGAAGA
TATTAATATTTGCAACAAGCAAAATTACCGTTGATCGATCACAAAGAATG
TGTTGCTACCATGGGTTACCGAAGTATCACTGATAACATGTTATGTGCAG
GCTTCAAAGATGGCACTAAAGATTCTTGCCAAGGTGAACATGACAAATAC
GAAAAGGAACAATGGGAACAAAAAATGGAAATCGAAAAGATTATCATTCA
CCCAGCATATGGAAAACTTGTCTCTAATGATGCAGACATGGCCTTGCTTA
AACTGAAGAAGAAAGTCTCGTTTAACCAACGCGTTCGACACGCATGCGTA
GCTGATGATTTTGTTGATATTGGTTTAGATTCGGAATGTTGGGTGTCTGG
TTGGGGCGCTCTTAAATTCAACGGGCGTTCTGCAAGGGTCAAAGTTGGAG
GGTGCGGTGGCACTCTTGTTTCTGATCAATTTGTGGTGACAGCGGCTCAT
TGTTTCGATCGCAGCAAAGATCCTGACGACTATAAAGTTACTGCAGGAGG
AATACACAGGAAAATGTGGAGTCAGAGAAAAAAAGACACGAATTGTTGGA
GGAACAACAGCTAAACCAGGGGAATGGCCTTGGCAGGTGATTCTGGCGGT
CCTTTAGTTTGTCGGAAACAAGATGCAGTGACTGGTGAATCGCAATGGTA
TCTGTGGGGAGTTGTTTCATGGGGTTATGGTTGTGCAACTCAACGTTATT
ACGGGGTCTATACAAAAGCTCACAATTTCCGACACTGGATTGCAGATGTG
ATGAGAAGATATTAATATTTGCAACAAGCAAAATTACCGTTGATCGATCA
CAAAGAATGTGTTGCTACCATGGGTTACCGAAGTATCACTGATAACATGT
TATGTGCAGGCTTCAAAGATGGCACTAAAGATTCTTGCCAAGGTGAACAT
GACAAATACGAAAAGGAACAATGGGAACAAAAAATGGAAATCGAAAAGAT
TATCATTCACCCAGCATATGGAAAACTTGTCTCTAATGATGCAGACATGG
CCTTGCTTAAACTGAAGAAGAAAGTCTCGTTTAACCAACGCGTTCGACAC
GCATGCGTAGCTGATGATTTTGTTGATATTGGTTTAGATTCGGAATGTTG
GGTGTCTGGTTGGGGCGCTCTTAAATTCAACGGGCGTTCTGCAAGGGTCA
AAGTTGGAGGGTGCGGTGGCACTCTTGTTTCTGATCAATTTGTGGTGACA
GCGGCTCATTGTTTCGATCGCAGCAAAGATCCTGACGACTATAAAGTTAC
TGCAGGAGGAATACACAGGAAAATGTGGAGTCAGAGAAAAAAAGACACGA
ATTGTTGGAGGAACAACAGCTAAACCAGGGGAATGGCCTTGGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011692XLOC_011692Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020852-exon-sc0000371-1575043694:144028..144118TCONS_00020852-exon-sc0000371-1575043694:144028..144118Clytia hemisphaericaexon
TCONS_00020852-exon-sc0000371-1575043694:142943..143051TCONS_00020852-exon-sc0000371-1575043694:142943..143051Clytia hemisphaericaexon
TCONS_00020852-exon-sc0000371-1575043694:142035..142288TCONS_00020852-exon-sc0000371-1575043694:142035..142288Clytia hemisphaericaexon
TCONS_00020852-exon-sc0000371-1575043694:141220..141346TCONS_00020852-exon-sc0000371-1575043694:141220..141346Clytia hemisphaericaexon
TCONS_00020852-exon-sc0000371-1575043694:139641..140067TCONS_00020852-exon-sc0000371-1575043694:139641..140067Clytia hemisphaericaexon
TCONS_00020852-exon-sc0000371-1510915933:144028..144118TCONS_00020852-exon-sc0000371-1510915933:144028..144118Clytia hemisphaericaexon
TCONS_00020852-exon-sc0000371-1510915933:142943..143051TCONS_00020852-exon-sc0000371-1510915933:142943..143051Clytia hemisphaericaexon
TCONS_00020852-exon-sc0000371-1510915933:142035..142288TCONS_00020852-exon-sc0000371-1510915933:142035..142288Clytia hemisphaericaexon
TCONS_00020852-exon-sc0000371-1510915933:141220..141346TCONS_00020852-exon-sc0000371-1510915933:141220..141346Clytia hemisphaericaexon
TCONS_00020852-exon-sc0000371-1510915933:139641..140067TCONS_00020852-exon-sc0000371-1510915933:139641..140067Clytia hemisphaericaexon
TCONS_00020852-exon-sc0000371-1491911889:144028..144118TCONS_00020852-exon-sc0000371-1491911889:144028..144118Clytia hemisphaericaexon
TCONS_00020852-exon-sc0000371-1491911889:142943..143051TCONS_00020852-exon-sc0000371-1491911889:142943..143051Clytia hemisphaericaexon
TCONS_00020852-exon-sc0000371-1491911889:142035..142288TCONS_00020852-exon-sc0000371-1491911889:142035..142288Clytia hemisphaericaexon
TCONS_00020852-exon-sc0000371-1491911889:141220..141346TCONS_00020852-exon-sc0000371-1491911889:141220..141346Clytia hemisphaericaexon
TCONS_00020852-exon-sc0000371-1491911889:139641..140067TCONS_00020852-exon-sc0000371-1491911889:139641..140067Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020852-proteinTCONS_00020852-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000371supercontigsc0000371:139641..144118 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.355221	0.606195	0.452475	0.147559	0.119759	0	0.17126	0.0534438	0.0748346	0.0926947	0.0449859	0	14.6473	14.3527	0.0504266	0.0811732	19.7664	25.8289	61.1725	65.6426	91.8295	97.7491	59.7189	72.3446	41.8571	52.8862	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR001254Trypsin_dom
IPR018114TRYPSIN_HIS
IPR033116TRYPSIN_SER
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
[Close]
BLAST of TCONS_00020852 vs. Swiss-Prot (Human)
Match: FA9 (Coagulation factor IX OS=Homo sapiens GN=F9 PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 1.680e-48
Identity = 101/242 (41.74%), Postives = 147/242 (60.74%), Query Frame = 2 
Query:   41 TRIVGGTTAKPGEWPWQVKVGG-----CGGTLVSDQFVVTAAHCFDRSKDPDDYKVTAGEHDKYEKEQWEQKMEIEKIIIHPAYGKLVSN-DADMAXXXXXXXVSFNQRVRHACVAD-DFVDIGLD-SECWVSGWGALKFNGRSARYLQQAKLPLIDHKECVATMGYRSITDNMLCAGFKDGTKDSCQGDSGGPLVCRKQDAVTGESQWYLWGVVSWGYGCATQRYYGVYTKAHNFRHWIAD 742
            TR+VGG  AKPG++PWQV + G     CGG++V+++++VTAAHC +         V AGEH+  E E  EQK  + +II H  Y   ++  + D+ALL+L + +  N  V   C+AD ++ +I L     +VSGWG +   GRSA  LQ  ++PL+D   C+ +  + +I +NM CAGF +G +DSCQGDSGGP V      V G S  +L G++SWG  CA +  YG+YTK   + +WI +
Sbjct:  225 TRVVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVK---ITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKF-TIYNNMFCAGFHEGGRDSCQGDSGGPHV----TEVEGTS--FLTGIISWGEECAMKGKYGIYTKVSRYVNWIKE 456
The following BLAST results are available for this feature:
BLAST of TCONS_00020852 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FA91.680e-4841.74Coagulation factor IX OS=Homo sapiens GN=F9 PE=1 S... [more]
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