TCONS_00020869 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00020869
Unique Name	TCONS_00020869
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1772

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000373:44657..53027+
coding sequence from alignment at sc0000373:44657..53027+

transcript sequence

>TCONS_00020869 ID=TCONS_00020869|Name=TCONS_00020869|organism=Clytia hemisphaerica|type=transcript|length=1772bp
ATACTGATAAATAACTCAGATGACAAATAACAACCTCAGCGTTCGAGATC
CAAATTCTTCCATATGAAGAGGGCCGCTGGGGCCGCTGACTTGAAAAAGG
CAAATTCAAAAGTGGCTTGTGTAATTGCTAGTTGAAACTGGGTTTCCAAG
CTGCAATCTATACTTCAAGATATTCTGTTTATGATATAGAAATGAGGCGC
TCGTCTATACTGACAAAGCAgaaagaacaaaagaatttccTGAAATTTGA
TCTCATGTGGTGCGTTTAAAATAGATTGAATAATGTCCTTTCAGttcttt
tgtttgattgtttgattgatttgacATTTCAGGTACAGCCAGATGGTGAT
TGTTTGTACAATTCGGTTATCGCTCAAATGTTTGGCTCATCCACCAAAGA
TGCATTAAAAGAGCTACGGCAAAAGACGGCAGATTATATGCGGACAAATG
AAGACGACTTTCTTCCTTTCACTTCCAACACGAAAACCGGTGACATGCTT
AGCACAGAGGAGTATGGGAAGTACTGTGATGACATAGAGAATACTACCAC
GTGGGGTGGTCAACTAGAGATTCGTGCGATATCGAACGTGTATCAACAAA
GAGTGGAGATTTATCAAGACAACGCTCCCAGGCTAGTGATCGGTGAAGAA
CATGTAGCCTCTACTCCTCTTCGATTATCGTGAAATTCTCTTGACTTTGA
GTTCACTTTCATTGCGTGGCTGTCTCACTGAATGTATGTACCATCTTGGA
TGTCTATCCGTTAATTACATGAGAGAGGATTCTACTTGTGAAATCTTGGG
GAACACCATCCAAAGAAACATTGAAGAACACGTGACCGTCTTAACCAATC
AGACGGGTTGGAATCATTTCGAAACAAATTATGACCGAAAAGCTaTTGGG
ATCACTTGTTCCCGAAGTAATCCATGCCCATCGGATAAACGTTGTGTTGA
TAATTGTGATGGCTTGGCTTCTTGCGTCCCTCTTACAGTCGAAGCGTTGC
ACAGTCACGTCCAAACCGCAACTAGTTCATCATTTTCGGATACCGCCAGA
GGCCCGGCATCTGCTTTCGACGGAAATGAAGGAACTATGTTCCATACCGC
CCACCTCATGACAGGACACTGGGTTAAGGCGGAATTCAACAATCGTGTGT
TTATCGACTATGTTGTGTTTGTGAATCGTAACAGCTACCCTACTCTCTCA
TACCGAAGTGATCTAATTGATCTGAAGACCATCCTAACCGTCAACGGGCA
GACGACCATGACATGGTTTGCGAATACAGGGGACATGGGGGAACGCAGAA
TCTTTTCATGTATGAGACAGGCTGATGGAATTTACGCTGAGCAACCACAA
GTGGTCGGTCACAACGCGTTAAACTTCCAAGAAATTTGGATTTATGGCGC
AGTTTTGTGATTCcgtttgatttgatttgttttattacttttatttttca
agcgagaaaattttttagaaaagtaaaacttcaaataatTCAAAGCGTCA
GCCTAGgcttaggtcccaggcaaaaaattAGGCCCCCCTAAagattcatg
aaatttttgataGCCCCCAAGGCTTTCGACCTTCGacacttttaaaaatt
tgtttcacGAAAGAAGGTTAAAACAATGTAAATTGTGTTTGCCTCACCAA
AAATAAGTCTTATTAATAATTTAAGTTTCATTCAACAATATTAGGAGAAA
TTTTGGATATTGTCGCAATTAGGCCTTACGTAAAAGTGTCGTCATTTGAA
CAATATTCACTTTGGTTTTAAA

Run BLAST on NCBI

protein sequence of TCONS_00020869-protein

>TCONS_00020869-protein ID=TCONS_00020869-protein|Name=TCONS_00020869-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
MYHLGCLSVNYMREDSTCEILGNTIQRNIEEHVTVLTNQTGWNHFETNYD
RKAIGITCSRSNPCPSDKRCVDNCDGLASCVPLTVEALHSHVQTATSSSF
SDTARGPASAFDGNEGTMFHTAHLMTGHWVKAEFNNRVFIDYVVFVNRNS
YPTLSYRSDLIDLKTILTVNGQTTMTWFANTGDMGERRIFSCMRQADGIY
AEQPQVVGHNALNFQEIWIYGAVL

Run BLAST on NCBI

transcript from alignment at sc0000373:44657..53027+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00020869 ID=TCONS_00020869|Name=TCONS_00020869|organism=Clytia hemisphaerica|type=transcript|length=8371bp|location=Sequence derived from alignment at sc0000373:44657..53027+ (Clytia hemisphaerica)
ATACTGATAAATAACTCAGATGACAAATAACAACCTCAGCGTTCGAGATC
CAAATTCTTCCATATGAAGAGGGCCGCTGGGGCCGCTGACTTGAAAAAGG
CAAATTCAAAAGTGGCTTGTGTAATTGCTAGTTGAAACTGGGTTTCCAAG
CTGCAATCTATACTTCAAGATATTCTGTTTATGATATAGAAATGAGGCGC
TCGTCTATACTGACAAAGCAgaaagaacaaaagaatttccTGAAATTTGA
TCTCATGTGGTGCGTTTAAAATAGATTGAATAATGTCCTTTCAGttcttt
tgtttgattgtttgattgatttgacATTTCAGGTACAGCCAGATGGTGAT
TGGTAAGTAAAATCGAGTaactgaaaaagattttatccaTTTCTATATCT
TGGGGCTTAGTATCTCACATTGAAACATCCTTTACGCTCGCTTAAAACGG
TAAAATTAATTAAGATTCaggttttttggagaaaaaGTCGTTGCACTGTC
AGTCTTCTGCAAAAtgaaaaacccactttcccgtggaaataattgacgtt
ttttatttttttctggacCCTTTGGACATAGGTACCCGTCGTTTACCGCA
AAAGTTCCAAATTTCGGGGTAATAAAGGGACCAAATGACGTggcagaaat
ttgaaaaattttaaactgtgatatctcgagtttgaaaggGAGTTAGAAGG
TCGTTGACcactcattggatcgagaattttatgaattttaagatGGGAGA
ACAGCaggaaaacagaaaaaatgctcttgaaaattctgaaatatgACGAA
CTATAACCCGTCGAAGAGTGCAATTTAACTCTGTGTTTTCAGCACCTTga
cgttttgatttttaaaccaTTTTAAGTGTTAATCTTTCGTTTTTCGGCTT
ATAAATCCAATTTTCGACCATTTACCATTaaaagggcttatgatgcgttc
agcttcACCCGTTTAGGTGGGTGccacgccgggtgacggctatatatata
tttttttttccttatatGACAGCTATCTCTAGGAGCATTGTGTGCGTTCA
GCAATACTTAACCGACGTTTGTGACGACGTGAACCCTCTAGTATAACCTA
AATTAAATTATAGAGATGCttgaaaagatatttattttctaACATCTTTT
AAAGTACCTTGTAGGCTCGCATATAGAAATACAAAATTAAGACAATTCAc
tctttaatttttcattcccATCTCATTTTCTCTGATTTCAGTTTGTACAA
TTCGGTTATCGCTCAAATGTTTGGCTCATCCACCAAAGTAAGTTATTGTT
ACTGTTCTCATCAAGAGAAGTTAAGTGTCTCCAACGTTTTTACCTCATGA
GACGAATTTTAACAATGTCAATAATTTTGAACTTCTAAATATCGAGGATA
CTGTTGTAGTATTATTAATCACTGTTTGATTTTCCAACAGAATCTATCAG
ATTCCTCTATACCACACTGTGTAACCAAATTCTAATGTTTTCTTCGTCTT
ATTTGTTCGTTCAAGGATGCATTAAAAGAGCTACGGCAAAAGACGGCAGA
TTATATGCGGACAAATGAAGACGACTTTCTTCCTTTCACTTCCAACACGA
AAACCGGTGACATGCTTAGCACAGGTGAGTTTTCAATGGTTGTTGACTGt
tagaaagttttttgaaattactTACCTATCAAAGGTTCCAAtaccaataa
aatattttgaagaatcaaactggttcttatttttatatttaaagctttta
aaaagGAAACGGTGAAAATCACGATTAAAAGCTTTCGCAACGCTCTCTTT
TCGGTACTTCTAAAATAGAGTGCACCACCAGAAACGACAGCCGATTTCAA
ACCACTATAAATCTTTTTcgacattttgaataattttgtttttgttacaG
AGGAGTATGGGAAGTACTGTGATGACATAGAGAATACTACCACGTGGGGT
GGTCAACTAGAGGTATGTTATTTCATTGTAAAGCTCATaccgaggggggg
gggctactcGATTTCGAAATGACGGTATGTGCCGcacaaaatctgctttt
caaaatcgtacccttacagtgcagttcaatatggctgaacaGGTACCCTT
TCATTGCATTTTCTCATGATTTaaccaacccttatagtgcactatatttt
tcagctgtaaatctgcgtgaaaaaagaagcttgggaaattttctatttca
aagaaaaactgagaaaattatttttgtcagctgtaattgtcagacaatag
aaactttttcaaacaaacgagaagtaaaaacctttctttatatcagttat
tttgaatttgttttaagaTTCGACTCATTCAGTGctatctcacagaaaca
cacccttacagtgcattttgggatgctggaAAACCCGGCACATGACGTaa
gccagatcatatgagtgcccccctccCCCTGGGGCTCATATATCTGAGGT
TATCTTTTTACTGCTGGCCAGAGTAACTGACATTGCTTCTCAAAGAATCA
ATATATTACTTACTAAGCTCGAAAAGGTTTCGAAAAAGAAATGTCCTCCT
CTTTACAGATTCGTGCGATATCGAACGTGTATCAACAAAGAGTGGAGATT
TATCAAGACAACGCTCCCAGGCTAGTGATCGGTGAAGAACATGTAGCCTC
TACTCCTCTTCGATTATCGTAAGTTGCCTTTTTGATGTAAACTCTGATTT
TAATTGTCGCCAAAAACCAAAGGCCCCACACTGATAAAGTTTATAAAGCC
TCTGACATTGCAATTTAATCTTTGACCTAGAAAGCGTTATGCTTAATATC
TGGAATATGCTCAGTCAGAGGCGTAGCCACGGGTTTTCGTTTCGGGGGGT
gagattggaaaatttttgacctttttaggGGAAATTTTTGGAGAAGATTT
TTCTCGTAACTTATGCGCCGCGGGCGTCAATTACTGCTCTAAGAAATCTC
AAGTTGCTTAAAAAAGAGGCATCTGAAGGTAAATGTTAGCGAGAGTAAGA
TCACAAAAAGTGCGGAAAACTTAAAATTTCATGTCGCAGAGAGTTTTCTT
TGTAAtcttggcgccgcaggcaaaaagcTAACCAGGCGGACCACAGGGAg
gcttcttttttatttaagatTTGGAATCCTAAAAGTGAACATATGCTGGG
ATTTGTCCACTGTTTTCTATTTATAGTAATAgaaattctgttttttttct
ttggttGTTTCCAATAAGAAGAATGACGTAATCTTAACTTGTGCAGAATT
CTCTCTTTCACCTTTGCAGGCAACTTGAATGAATGCAACTTGAAATACAT
AATTTACTATCGCTATTTATAGAAATTTTCGTAGAATTGACAGTTAGTGT
GACAGATGTCGTttgtttttgtcaataatttatATACCCCTTACCTGTTG
TTATTTCCTGTCCATTTTTAAGTTCCAGAAAACtaatacaattttttaaa
tcgcaAACATCCTCTTGTGAGTAAAAATAATAACCCACGTGATTTtcttt
tggacccacgaacccacgaacccacgagatattttgacccacgaacccac
gaacccacgagacaTTCTAACCCACGaacacccacgagggcacgaaccca
cgaacccacgaacccacgacacgcacgtaacccacgtaatttagcagact
ctaaTATAGTACCATGAATGACATTTCTATGAATTTTATCGATATAGAAA
ATTTAACTTAACTGGATTAACTGGATTAACTGGATTTATGAATTTCGAAG
TCACATCAGAAAATGTCGATCAAATTTCAAACACTTTGTCTTGATAACAC
GAAGTAGAAGCATTGTGTAAAGATGATATCGATGCAATGGCTTTTCTCAG
TGTTGTTGTTTTGACCTTATCATTATTACTAAAGTTTGCTTCTACAACGG
TGTACTCTATCGAACACTGTCAACAAAGGTGCAACTCTGGCTGGAGAAAA
CATCGAATCTTTACTACCCGACGCCGAAGTTGCTTTAGCTGGATCCATCA
TTAATTACAGTAAATGGTCTCTCATCGAACGTGAATGGGAAATAGAATAC
GGAGATGTTGATATCCCTGCAGAGACTGTACACCCTGGGTACGAGGAAGC
TTTTGTTACGGAGAAGGATTCGGCTTTCTTCAAGCTTCATCATGGTGTTT
CTGGCAAACTGTCATGGGAGGTCAGAACCTTTAATGAATCATACATAATT
CATTTTATGTATGATATCCCCTATAATTTGGGGTTCAAGGAGCATAACCA
ACTGGCTATTGCTCTCTGCTCATCAAACGACAGCCTTTGCCGGGAATTTT
CCCGATCGGATTTGAAATCGAAGACGTACTCTTTCTCCAAACGTCGGCTT
TACAGATATACCATCGAAGATGTGTCTGTTTGTAACCAGGATTTATGCGT
CTTCGCTAAGATGGGTACTGGACACAAAGCCACAGCCAAAATCAGAGTCT
TCNTTTCGCTAAGATGGGTACTGGGCATAAAGCCACCGCCAAAATCAGAT
TCCCAGATTCCAAAATCAGTCTTCCCAGCGCGAGAAGAACATGCCGCtac
gaaaatgaagaaaaaattgcAACATGATTCCTTTGGAAATCAAGAATATG
ATAATTTTTTGGAAGACGAAAAAGATTCGTCCAACCGAACGTCCAGAGCT
GCTTATCTCCAATTATATTCATTCTTCATGATTGTTGTTGTCACCCTCGC
ATATGTTGGGCTGGTGTAACTTGACGATCTTATCGGATGTTATTTCTAAC
CTGAAgaacctttttttcaaatttagcaGACACAAACTTGAACAGTGAAA
AATGGCACTTTGAAAAACCTTTGTGACTGATTGAAAACTAGCCATTACAA
CAGCATAATGAAAAATATACAGTCAAGCTTGGAAAACAatcttaagtttt
ttttaatttctgttATTATGATTTTATTACcaccttttttgaattttatt
ttccgAAGTATCGCGCACATTTTTTNTTTTTAAGTTTTGTTTAATTTCTG
TTATTATGATTTTATTACcaccttttttgaattttattttccgAAGTATC
GCGCACATTTTTTTCTATATCAAAGTTTTGTACTTTTTTCTACGGTAGTT
ATTAATGGGAATTGCTGATGATTGGTGATTCTGGTTTTAGATGTAATAGA
CAGACCCTTTATACAACCCTTGAAAGACCCTTCATTCTTGAATATAATAT
GAATATTTTATGAAAACTAGAAACCCTTGAAAATATATTCCAAGACCCCT
CTTAACCATTGACATCCTTGCTATATAGGGCTCTTTGTATAAAAgttaac
attttattttgtgTCTATTTCTGAAAATAAACCTTTATGTTTGTTTCAAA
TGTTATTCAAAAAAGATGAAATTGACCATTTTCATTCCACGTACAAACAA
CCGattgaatttttataaaagtaaGTTTTACTGAAATATGTCGCCTGGCA
ACTAAACTGACTTGAAAGAAATATTGACTGGTTTAGTCCCTTTTTCATTT
AGTATTCAACTccagtatttttcaaaaatttattgattgatCAAAGTTTC
TGTAACTCGTCATTTTCgatgttttttgtaaaagaaaccTCTTTACAATG
AAGTTGGCACTGAAAATTGCGTTTTGTGTTACCATTTTCTGCCTAAGTTT
CACCTTTTCGCATGTTTTCCAATTAAAACAGTGCAATAATTTTGATGCAG
AATTTTCCAAAGTCACTTATGGTCAACGGCTTTTAGGTGAAATTCTCTTG
ACTTTGAGTTCACTTTCATTGCGTGGCTGTCTCACTGAATGTATGTACCA
TCTTGGATGTCTATCCGTTAATTACATGAGAGAGGATTCTACTTGTGAAA
TCTTGGGGAACACCATCCAAAGAAACATTGAAGAACACGTGACCGTCTTA
ACCAATCAGACGGGTTGGAATCATTTCGAAACAAATTATGACCGAAAAGC
TGTAAGTTATCAATATCATTCATTCACTTTTGAACCTTTAGTGGTCCGAA
TTTCAAAACTTGAGCTTTCAAAAGCCTCAATTTGAGCTTTCAAAAGCCTC
CATTCGAACGGTGTACTAAAGTCTTTTGTTGGACCTGAATCGAGGTTTTG
CAGTTGACTTTTCGTAGATTAAACATCATTATATAAACTCTttattctat
tttgttttttagaTTGGGATCACTTGTTCCCGAAGTAATCCATGCCCATC
GGATAAACGTTGTGTTGATAATTGTGATGGCTTGGCTTCTTGCGTCCCTC
TTACAGTCGGTAAGACATCGGAGTATCCAATAAGCGACCATTCTGAAAAC
TAATCTTCCTTCCTTCTCTTCACTATTTAGGCGCCATTGCTTTNGCCATT
CTGAAAACTTCTTCCTGCCTTCTCTTCACTATTTAAGCGCCATTGCTTTT
TTATCATCTTAAGTGGATTAACTTTTGCGTATACATTTTTCACGAATTGA
GAATCTAAAGTTTACGCCTGGCCAAAATCTCGTGAATTGGCTTCTTTTTC
ACGCAATTTAATTCTATTGGGGTTATCATGGGCCACAATTCGGATTTTTT
ATCTCCACTTTCTAGAAAAAGTTAGATGCCTTCAATAGCtcgtttgaaag
atatttttaagtCTTCTCTTTTGCCACTAACTTGATTAACGGAAGTGTTG
CAAATGGTATAAGTTTTAAGTCGATTCACACGATGGCTCGAGTTATACCA
CAAGTTATACCTCCTGTCACGAATCCTCCAAATATCATTTGGtccaaaaa
tcttttctaaacttttgaaatttgcccACTTTTTCTTTGATCATTTTTGA
GAACACAAAAATTGTTGTCTGTATTTTAGAAGCGTTGCACAGTCACGTCC
AAACCGCAACTAGTTCATCATTTTCGGATACCGCCAGAGGCCCGGCATCT
GCTTTCGACGGAAATGAAGGAACTATGTTCCATACCGCCCACCTCATGAC
AGGACACTGGGTTAAGGTCCGTTCACATTTTACTTTTGTTCACTTCTCTG
GATTTTTTAAAACACCTTAAAAGCTGGAAATTATTATTAGAAGATTTCTG
TTGTTTTTATCAATGAGGtgttatcagatagaataaCATCTTACTTTGGC
TGTTTCATCGTCTATTCAGAttcattttgttaaaagtgattattggtcgt
aaaaatagtttctcaaaatatgaagcGTGGATAAAAATCTATTTATAAGG
GTATTTTTTCACTGCATTTAGTCTCAGTTCAGAAaggtttaattttgaaa
aatgtttggaATTTACAAATCTATTTCAGTTTACAATCTTCAATTTTCAC
TTCAAAGACTATAATCTGAATTCCAATCTACATGGAAGGAATAactaatt
taggtgaaaacttGACAGCTAGATTTCTTTCCTAACAAGTgcgttttcaa
aaagttttcaccaCTGAAGAATCTATGAAAGTAGCTGATTTCgaatacaa
aatttttatttttactgatGGGACATAAATTtccatttgaaaataattaa
attatgttcataattttcgagaattcaaaagaatctaATCAAGCATGTGA
AAATATGTAATTAATATACGATATGAcaacaaagaaatgaaattattatt
acaCACGTATACGTAATATTCCTTCGCTTTCCAAAAGTGAAGAAATTAAC
AGTTTTGTGGTGAAGAAAACGAGAGAACGCGTTCAAATATTGTATTCTGt
caattttgttcatttttatcTATTCAGGCGGAATTCAACAATCGTGTGTT
TATCGACTATGTTGTGTTTGTGAATCGTAACAGCTACCCTACTCTCTCAT
ACCGAAGTGATCTAATTGATCTGAAGACCATCCTAACCGTCAACGGGCAG
ACGACCATGACATGGTTTGCGAATACAGGGGACATGGGGGAACGCAGAAT
CTTTTCATGTATGAGACAGGCTGATGGAATTTACGCTGAGCAACCACAAG
TGGTCGGTCACAACGCGTTAAACTTCCAAGAAATTTGGATTTATGGCGCA
GTTTTGTGATTCcgtttgatttgatttgttttattacttttatttttcaa
gcgagaaaattttttagaaaagtaaaacttcaaataatTCAAAGCGTCAG
CCTAGgcttaggtcccaggcaaaaaattAGGCCCCCCTAAagattcatga
aatttttgataGCCCCCAAGGCTTTCGACCTTCGacacttttaaaaattt
gtttcacGAAAGAAGGTTAAAACAATGTAAATTGTGTTTGCCTCACCAAA
AATAAGTCTTATTAATAATTTAAGTTTCATTCAACAATATTAGGAGAAAT
TTTGGATATTGTCGCAATTAGGCCTTACGTAAAAGTGTCGTCATTTGAAC
AATATTCACTTTGGTTTTAAA

Coding sequence (CDS) from alignment at sc0000373:44657..53027+

>TCONS_00020869 ID=TCONS_00020869|Name=TCONS_00020869|organism=Clytia hemisphaerica|type=CDS|length=2700bp|location=Sequence derived from alignment at sc0000373:44657..53027+ (Clytia hemisphaerica)
ATGTACCATCTTGGATGTCTATCCGTTAATTACATGAGAGAGGATTCTAC
TTGTGAAATCTTGGGGAACACCATCCAAAGAAACATTGAAGAACACGTGA
CCGTCTTAACCAATCAGACGGGTTGGAATCATTTCGAAACAAATTATGAC
CGAAAAGCTaTTGGGATCACTTGTTCCCGAAGTAATCCATGCCCATCGGA
TAAACGTTGTGTTGATAATTGTGATGGCTTGGCTTCTTGCGTCCCTCTTA
CAGTCGAAGCGTTGCACAGTCACGTCCAAACCGCAACTAGTTCATCATTT
TCGGATACCGCCAGAGGCCCGGCATCTGCTTTCGACGGAAATGAAGGAAC
TATGTTCCATACCGCCCACCTCATGACAGGACACTGGGTTAAGGCGGAAT
TCAACAATCGTGTGTTTATCGACTATGTTGTGTTTGTGAATCGTAACAGC
TACCCTACTCTCTCATACCGAAGTGATCTAATTGATCTGAAGACCATCCT
AACCGTCAACGGGCAGACGACCATGACATGGTTTGCGAATACAGGGGACA
TGGGGGAACGCAGAATCTTTTCATGTATGAGACAGGCTGATGGAATTTAC
GCTGAGCAACCACAAGTGGTCGGTCACAACGCGTTAAACTTCCAAGAAAT
TTGGATTTATGGCGCAGTTTTGTGAATGTACCATCTTGGATGTCTATCCG
TTAATTACATGAGAGAGGATTCTACTTGTGAAATCTTGGGGAACACCATC
CAAAGAAACATTGAAGAACACGTGACCGTCTTAACCAATCAGACGGGTTG
GAATCATTTCGAAACAAATTATGACCGAAAAGCTaTTGGGATCACTTGTT
CCCGAAGTAATCCATGCCCATCGGATAAACGTTGTGTTGATAATTGTGAT
GGCTTGGCTTCTTGCGTCCCTCTTACAGTCGAAGCGTTGCACAGTCACGT
CCAAACCGCAACTAGTTCATCATTTTCGGATACCGCCAGAGGCCCGGCAT
CTGCTTTCGACGGAAATGAAGGAACTATGTTCCATACCGCCCACCTCATG
ACAGGACACTGGGTTAAGGCGGAATTCAACAATCGTGTGTTTATCGACTA
TGTTGTGTTTGTGAATCGTAACAGCTACCCTACTCTCTCATACCGAAGTG
ATCTAATTGATCTGAAGACCATCCTAACCGTCAACGGGCAGACGACCATG
ACATGGTTTGCGAATACAGGGGACATGGGGGAACGCAGAATCTTTTCATG
TATGAGACAGGCTGATGGAATTTACGCTGAGCAACCACAAGTGGTCGGTC
ACAACGCGTTAAACTTCCAAGAAATTTGGATTTATGGCGCAGTTTTGTGA
ATGTACCATCTTGGATGTCTATCCGTTAATTACATGAGAGAGGATTCTAC
TTGTGAAATCTTGGGGAACACCATCCAAAGAAACATTGAAGAACACGTGA
CCGTCTTAACCAATCAGACGGGTTGGAATCATTTCGAAACAAATTATGAC
CGAAAAGCTaTTGGGATCACTTGTTCCCGAAGTAATCCATGCCCATCGGA
TAAACGTTGTGTTGATAATTGTGATGGCTTGGCTTCTTGCGTCCCTCTTA
CAGTCGAAGCGTTGCACAGTCACGTCCAAACCGCAACTAGTTCATCATTT
TCGGATACCGCCAGAGGCCCGGCATCTGCTTTCGACGGAAATGAAGGAAC
TATGTTCCATACCGCCCACCTCATGACAGGACACTGGGTTAAGGCGGAAT
TCAACAATCGTGTGTTTATCGACTATGTTGTGTTTGTGAATCGTAACAGC
TACCCTACTCTCTCATACCGAAGTGATCTAATTGATCTGAAGACCATCCT
AACCGTCAACGGGCAGACGACCATGACATGGTTTGCGAATACAGGGGACA
TGGGGGAACGCAGAATCTTTTCATGTATGAGACAGGCTGATGGAATTTAC
GCTGAGCAACCACAAGTGGTCGGTCACAACGCGTTAAACTTCCAAGAAAT
TTGGATTTATGGCGCAGTTTTGTGAATGTACCATCTTGGATGTCTATCCG
TTAATTACATGAGAGAGGATTCTACTTGTGAAATCTTGGGGAACACCATC
CAAAGAAACATTGAAGAACACGTGACCGTCTTAACCAATCAGACGGGTTG
GAATCATTTCGAAACAAATTATGACCGAAAAGCTaTTGGGATCACTTGTT
CCCGAAGTAATCCATGCCCATCGGATAAACGTTGTGTTGATAATTGTGAT
GGCTTGGCTTCTTGCGTCCCTCTTACAGTCGAAGCGTTGCACAGTCACGT
CCAAACCGCAACTAGTTCATCATTTTCGGATACCGCCAGAGGCCCGGCAT
CTGCTTTCGACGGAAATGAAGGAACTATGTTCCATACCGCCCACCTCATG
ACAGGACACTGGGTTAAGGCGGAATTCAACAATCGTGTGTTTATCGACTA
TGTTGTGTTTGTGAATCGTAACAGCTACCCTACTCTCTCATACCGAAGTG
ATCTAATTGATCTGAAGACCATCCTAACCGTCAACGGGCAGACGACCATG
ACATGGTTTGCGAATACAGGGGACATGGGGGAACGCAGAATCTTTTCATG
TATGAGACAGGCTGATGGAATTTACGCTGAGCAACCACAAGTGGTCGGTC
ACAACGCGTTAAACTTCCAAGAAATTTGGATTTATGGCGCAGTTTTGTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_011704	XLOC_011704	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00020869-protein	TCONS_00020869-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000373	supercontig	sc0000373:44657..53027 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.67897	1.02472	1.09034	1.29002	0.232866	0.718605	0.703916	0.718001	0.595403	0.507163	0.374475	0.159185	0.275405	0.173552	0.46974	0.0525667	0.444688	0.613149	1.95655	3.29106	0.648756	0.37434	1.09734	1.01142	0.441179	0.337999	0.452434	0.360847	0.64744	0.595664

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR008979	Galactose-bd-like

Blast

[Close]

BLAST of TCONS_00020869 vs. Swiss-Prot (Human)
Match: OTU6B (OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.503e-28
Identity = 51/116 (43.97%), Postives = 79/116 (68.10%), Query Frame = 3

Query:  330 QVQPDGDCLYNSVIAQMFGSSTKDALKELRQKTADYMRTNEDDFLPFTSNTKTGDMLSTEEYGKYCDDIENTTTWGGQLEIRAISNVYQQRVEIYQDNAPRLVIGEEHVASTPLRL 677
            Q+  DG C+Y ++  Q+        +  LR +TA+YM+++ +DFLPF +N  TGDM + EE+ KYC+DI NT  WGGQLE+RA+S++ Q  +EI Q ++P +++GEE+ +  PL L
Sbjct:  151 QIPSDGHCMYKAIEDQLKEKDCALTVVALRSQTAEYMQSHVEDFLPFLTNPNTGDMYTPEEFQKYCEDIVNTAAWGGQLELRALSHILQTPIEIIQADSPPIIVGEEY-SKKPLIL 265

The following BLAST results are available for this feature:

BLAST of TCONS_00020869 vs. Swiss-Prot (Human)

BLAST of TCONS_00020869 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
OTU6B	3.503e-28	43.97	OTU domain-containing protein 6B OS=Homo sapiens G...	[more]

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TCONS_00020869 (transcript) - C. hemisphaerica