TCONS_00020873 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020873
Unique NameTCONS_00020873
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1040

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020873 ID=TCONS_00020873|Name=TCONS_00020873|organism=Clytia hemisphaerica|type=transcript|length=1040bp
TCCGAGGCACAACCCTATCCTGTATAAATAATGGAGCAAATTCTTCATAC
AGCAATCATTCAATCGAAGTAAAGAAGCTCACATCAAGAAAAAGCAACAA
TGAAGGTTGTTTGCTTGTTCTTGTTACTGTTGGTAGCCACTCTAGCGTAT
TGTTCAGTGGAGAACGAAAGTGCTGAAAATGCAGCACCATTCGATGACGA
AAATGTTGTAGATACAACACAAGTGGATGATGAAAATGCCGAAGACACGA
CACCAGCTGAGAATATCAATGAAGATGAAGTTGATGAATTTGAAATGGAA
GATGAAGACTTGAAGAAACAAGAGATGACGCAAGAAGACCCATTGTTGTT
TGGCAGACGGCGTCGGcgtagaagaagaagaagacgaAGACGCAGAAGTT
GTGTTGCACCAAAAGCTTCATGCTACCTTGGTGGAACAGGGGGATGCATA
GGACCTGGAACCATTTTTGTCAACCTTCCGTTAACCTTCAAGAAAACGTT
GTCACCAGCCTGCCATAAACACTTAGTGTGTTACAAATGTGGACAAAAAT
ACTACTGGTCTCGCCCATCCTGTGATTCCCGTTTGCGACACGACATGAAC
CATATCTGCAACtgtaaatacaaaggattttGGAAATCCGCCATCCGCCT
TTTGTGCAAAAAGAGGGCGTTGAGAATGTATTTGCATGCACGAGCATTTG
GCAGCAAATATTATAACCAATTATCTCCAAGCTGGTGTAACTATGGTTGT
GTGACTGCCTATCGACCAAGTGTGGGACTAGTATAGAAAGCCAGCCACAA
AAGCTAACCTTTTTGGTTAATTCTTTATCAAACTACtatgtgaaatattt
tattgtACGACCATTAGAAAAGCACTAAGAAATGATTCTTTAAAAATTAG
TGTATTTTTATTTCCAAGCACTCAAatgtaactttttttaaaacctTTGA
TTAATGATTTATTGATTAATGATCATAATTGTAATTTGTTGATATTCTTC
TCATATTGATCACTTTCGCTGTTCAAAACTTAAAcccaac
Run BLAST on NCBI

protein sequence of TCONS_00020873-protein

>TCONS_00020873-protein ID=TCONS_00020873-protein|Name=TCONS_00020873-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
MKVVCLFLLLLVATLAYCSVENESAENAAPFDDENVVDTTQVDDENAEDT
TPAENINEDEVDEFEMEDEDLKKQEMTQEDPLLFGRRRRRRRRRRRRRRS
CVAPKASCYLGGTGGCIGPGTIFVNLPLTFKKTLSPACHKHLVCYKCGQK
YYWSRPSCDSRLRHDMNHICNCKYKGFWKSAIRLLCKKRALRMYLHARAF
GSKYYNQLSPSWCNYGCVTAYRPSVGLV
Run BLAST on NCBI

transcript from alignment at sc0000373:64590..67090+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020873 ID=TCONS_00020873|Name=TCONS_00020873|organism=Clytia hemisphaerica|type=transcript|length=2501bp|location=Sequence derived from alignment at sc0000373:64590..67090+ (Clytia hemisphaerica)
TCCGAGGCACAACCCTATCCTGTATAAATAATGGAGCAAATTCTTCATAC
AGCAATCATTCAATCGAAGTAAAGAAGCTCACATCAAGAAAAAGCAACAA
TGAAGGTAAGTTTATAACAAGTCTTATCCAATCTATAAAAACNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Nttggtccattttttccaaattttggtttgattttcaccaaattttggtc
aaaatctttggaaatcgtgaccctttgagagagaaatttttgattttcgt
gattttgggacactttcagagactaacttttgaatttgtacccctttgag
agacttttgaggaatgagaaaaggtacccttatggctcgcacatacccgg
cacccattttgcctaagtaccccccccgggctgAAAACCAATAGGGATAC
GTGTTTGGTGATCTATTAACACCCGATGTTGTAAAACTACTCAATACAAT
GGAATCGACAGTTTCGATTAAGATTTTGATAAAGATTGAAACAACCAACC
TCGCCCCCATGCTTCTTTGTTCAAATAATATCCAGAGAAAAACGTCGATG
AAGTTCACCCTGGGACCGAGGGTAAAAGAGAATCTTATATAATGAATATT
GTTTTCTTACAGGTTGTTTGCTTGTTCTTGTTACTGTTGGTAGCCACTCT
AGCGTATTGTTCAGTGGAGAACGAAAGTGCTGAAAATGCAGCACCATTCG
ATGACGAAAATGTTGTAGATACAACACAAGTGGATGATGAAAATGCCGAA
GACACGACACCAGCTGAGAATATGTAAGTACCCGCTGAAATATAGTGTTT
ATTGGTAAAAACAAACGTTGAATGAAAAATTGAGTTTTGTTGAGACCAAG
ATGCAATGGAGGTTGAAGAGGGTACTAAACATTAATGACGGCGAGTGTTT
CTTTCACTATCACTCCATTATACCTGTGAATTGCTTAGCCAATAAGGAAA
GAGAATTTTTGGAGACGGCTTGATTTGAATGGCTACGTTATTCTTTAGCA
ATGAAGATGAAGTTGATGAATTTGAAATGGAAGATGAAGACTTGAAGAAA
CAAGAGATGACGCAAGAAGACCCATTGTTGTTTGGCAGACGGCGTCGGcg
tagaagaagaagaagacgaAGACGCAGAAGTTGTGTTGCACCAAAAGCTT
GTAAGATAGAAgttgtcttttttattttatgatcgCCGAATCACCAAAAA
TATTCATCACACAAGCAGCAACAGCAAAAAACGAATAATAGCCCGAATTA
CATATCACGCCTCAGCAAATTTACTTTTCCTCAAACACGctaacaaaaaa
attatgaatcATGCAATTTTATTTTCCTTCTTGCTCTTTATTCCCTTAGT
AGTTAAAGTTTGATGCCGTCAGAGAATAACTGTATTAAACGCTATTTTCT
TTTATTACTATGAAGCATGCTACCTTGGTGGAACAGGGGGATGCATAGGA
CCTGGAACCATTTTTGTCAACCTTCCGTTAACCTTCAAGAAAACGTTGTC
ACCAGCCTGCCATAAACACTTAGTGTGTTACAAATGTGTAAGTTTACTTA
AATTTTTACGgctttttcaataaaatgaaaaatatttcttcctaTAGTGC
ATACCAGTAAGTTCGTTGTGTCAAAGATGAACTTCCACGGCATGTCTTCT
TATGAATAAGAAACTCACGTCTAaatgattattttgaaaattacgtTTCA
GGGACAAAAATACTACTGGTCTCGCCCATCCTGTGATTCCCGTTTGCGAC
ACGACATGAACCATATCTGCAACtgtaaatacaaaggattttGGAAATCC
GCCATCCGCCTTTTGTGCAAAAAGAGGGCGTTGAGAATGTATTTGCATGC
ACGAGCATTTGGCAGCAAATATTATAACCAATTATCTCCAAGCTGGTGTA
ACTATGGTTGTGTGACTGCCTATCGACCAAGTGTGGGACTAGTATAGAAA
GCCAGCCACAAAAGCTAACCTTTTTGGTTAATTCTTTATCAAACTACtat
gtgaaatattttattgtACGACCATTAGAAAAGCACTAAGAAATGATTCT
TTAAAAATTAGTGTATTTTTATTTCCAAGCACTCAAatgtaacttttttt
aaaacctTTGATTAATGATTTATTGATTAATGATCATAATTGTAATTTGT
TGATATTCTTCTCATATTGATCACTTTCGCTGTTCAAAACTTAAAcccaa
c

Coding sequence (CDS) from alignment at sc0000373:64590..67090+

>TCONS_00020873 ID=TCONS_00020873|Name=TCONS_00020873|organism=Clytia hemisphaerica|type=CDS|length=3435bp|location=Sequence derived from alignment at sc0000373:64590..67090+ (Clytia hemisphaerica)
ATGAAGGTTGTTTGCTTGTTCTTGTTACTGTTGGTAGCCACTCTAGCGTA
TTGTTCAGTGGAGAACGAAAGTGCTGAAAATGCAGCACCATTCGATGACG
AAAATGTTGTAGATACAACACAAGTGGATGATGAAAATGCCGAAGACACG
ACACCAGCTGAGAATATCAATGAAGATGAAGTTGATGAATTTGAAATGGA
AGATGAAGACTTGAAGAAACAAGAGATGACGCAAGAAGACCCATTGTTGT
TTGGCAGACGGCGTCGGcgtagaagaagaagaagacgaAGACGCAGAAGT
TGTGTTGCACCAAAAGCTTCATGCTACCTTGGTGGAACAGGGGGATGCAT
AGGACCTGGAACCATTTTTGTCAACCTTCCGTTAACCTTCAAGAAAACGT
TGTCACCAGCCTGCCATAAACACTTAGTGTGTTACAAATGTGGACAAAAA
TACTACTGGTCTCGCCCATCCTGTGATTCCCGTTTGCGACACGACATGAA
CCATATCTGCAACtgtaaatacaaaggattttGGAAATCCGCCATCCGCC
TTTTGTGCAAAAAGAGGGCGTTGAGAATGTATTTGCATGCACGAGCATTT
GGCAGCAAATATTATAACCAATTATCTCCAAGCTGGTGTAACTATGGTTG
TGTGACTGCCTATCGACCAAGTGTGGGACTAGTATAGATGAAGGTTGTTT
GCTTGTTCTTGTTACTGTTGGTAGCCACTCTAGCGTATTGTTCAGTGGAG
AACGAAAGTGCTGAAAATGCAGCACCATTCGATGACGAAAATGTTGTAGA
TACAACACAAGTGGATGATGAAAATGCCGAAGACACGACACCAGCTGAGA
ATATCAATGAAGATGAAGTTGATGAATTTGAAATGGAAGATGAAGACTTG
AAGAAACAAGAGATGACGCAAGAAGACCCATTGTTGTTTGGCAGACGGCG
TCGGcgtagaagaagaagaagacgaAGACGCAGAAGTTGTGTTGCACCAA
AAGCTTCATGCTACCTTGGTGGAACAGGGGGATGCATAGGACCTGGAACC
ATTTTTGTCAACCTTCCGTTAACCTTCAAGAAAACGTTGTCACCAGCCTG
CCATAAACACTTAGTGTGTTACAAATGTGGACAAAAATACTACTGGTCTC
GCCCATCCTGTGATTCCCGTTTGCGACACGACATGAACCATATCTGCAAC
tgtaaatacaaaggattttGGAAATCCGCCATCCGCCTTTTGTGCAAAAA
GAGGGCGTTGAGAATGTATTTGCATGCACGAGCATTTGGCAGCAAATATT
ATAACCAATTATCTCCAAGCTGGTGTAACTATGGTTGTGTGACTGCCTAT
CGACCAAGTGTGGGACTAGTATAGATGAAGGTTGTTTGCTTGTTCTTGTT
ACTGTTGGTAGCCACTCTAGCGTATTGTTCAGTGGAGAACGAAAGTGCTG
AAAATGCAGCACCATTCGATGACGAAAATGTTGTAGATACAACACAAGTG
GATGATGAAAATGCCGAAGACACGACACCAGCTGAGAATATCAATGAAGA
TGAAGTTGATGAATTTGAAATGGAAGATGAAGACTTGAAGAAACAAGAGA
TGACGCAAGAAGACCCATTGTTGTTTGGCAGACGGCGTCGGcgtagaaga
agaagaagacgaAGACGCAGAAGTTGTGTTGCACCAAAAGCTTCATGCTA
CCTTGGTGGAACAGGGGGATGCATAGGACCTGGAACCATTTTTGTCAACC
TTCCGTTAACCTTCAAGAAAACGTTGTCACCAGCCTGCCATAAACACTTA
GTGTGTTACAAATGTGGACAAAAATACTACTGGTCTCGCCCATCCTGTGA
TTCCCGTTTGCGACACGACATGAACCATATCTGCAACtgtaaatacaaag
gattttGGAAATCCGCCATCCGCCTTTTGTGCAAAAAGAGGGCGTTGAGA
ATGTATTTGCATGCACGAGCATTTGGCAGCAAATATTATAACCAATTATC
TCCAAGCTGGTGTAACTATGGTTGTGTGACTGCCTATCGACCAAGTGTGG
GACTAGTATAGATGAAGGTTGTTTGCTTGTTCTTGTTACTGTTGGTAGCC
ACTCTAGCGTATTGTTCAGTGGAGAACGAAAGTGCTGAAAATGCAGCACC
ATTCGATGACGAAAATGTTGTAGATACAACACAAGTGGATGATGAAAATG
CCGAAGACACGACACCAGCTGAGAATATCAATGAAGATGAAGTTGATGAA
TTTGAAATGGAAGATGAAGACTTGAAGAAACAAGAGATGACGCAAGAAGA
CCCATTGTTGTTTGGCAGACGGCGTCGGcgtagaagaagaagaagacgaA
GACGCAGAAGTTGTGTTGCACCAAAAGCTTCATGCTACCTTGGTGGAACA
GGGGGATGCATAGGACCTGGAACCATTTTTGTCAACCTTCCGTTAACCTT
CAAGAAAACGTTGTCACCAGCCTGCCATAAACACTTAGTGTGTTACAAAT
GTGGACAAAAATACTACTGGTCTCGCCCATCCTGTGATTCCCGTTTGCGA
CACGACATGAACCATATCTGCAACtgtaaatacaaaggattttGGAAATC
CGCCATCCGCCTTTTGTGCAAAAAGAGGGCGTTGAGAATGTATTTGCATG
CACGAGCATTTGGCAGCAAATATTATAACCAATTATCTCCAAGCTGGTGT
AACTATGGTTGTGTGACTGCCTATCGACCAAGTGTGGGACTAGTATAGAT
GAAGGTTGTTTGCTTGTTCTTGTTACTGTTGGTAGCCACTCTAGCGTATT
GTTCAGTGGAGAACGAAAGTGCTGAAAATGCAGCACCATTCGATGACGAA
AATGTTGTAGATACAACACAAGTGGATGATGAAAATGCCGAAGACACGAC
ACCAGCTGAGAATATCAATGAAGATGAAGTTGATGAATTTGAAATGGAAG
ATGAAGACTTGAAGAAACAAGAGATGACGCAAGAAGACCCATTGTTGTTT
GGCAGACGGCGTCGGcgtagaagaagaagaagacgaAGACGCAGAAGTTG
TGTTGCACCAAAAGCTTCATGCTACCTTGGTGGAACAGGGGGATGCATAG
GACCTGGAACCATTTTTGTCAACCTTCCGTTAACCTTCAAGAAAACGTTG
TCACCAGCCTGCCATAAACACTTAGTGTGTTACAAATGTGGACAAAAATA
CTACTGGTCTCGCCCATCCTGTGATTCCCGTTTGCGACACGACATGAACC
ATATCTGCAACtgtaaatacaaaggattttGGAAATCCGCCATCCGCCTT
TTGTGCAAAAAGAGGGCGTTGAGAATGTATTTGCATGCACGAGCATTTGG
CAGCAAATATTATAACCAATTATCTCCAAGCTGGTGTAACTATGGTTGTG
TGACTGCCTATCGACCAAGTGTGGGACTAGTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011706XLOC_011706Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020873-exon-sc0000373-1491911889:64590..64694TCONS_00020873-exon-sc0000373-1491911889:64590..64694Clytia hemisphaericaexon
TCONS_00020873-exon-sc0000373-1510915933:64590..64694TCONS_00020873-exon-sc0000373-1510915933:64590..64694Clytia hemisphaericaexon
TCONS_00020873-exon-sc0000373-1575043694:64590..64694TCONS_00020873-exon-sc0000373-1575043694:64590..64694Clytia hemisphaericaexon
TCONS_00020873-exon-sc0000373-1491911889:65502..65662TCONS_00020873-exon-sc0000373-1491911889:65502..65662Clytia hemisphaericaexon
TCONS_00020873-exon-sc0000373-1510915933:65502..65662TCONS_00020873-exon-sc0000373-1510915933:65502..65662Clytia hemisphaericaexon
TCONS_00020873-exon-sc0000373-1575043694:65502..65662TCONS_00020873-exon-sc0000373-1575043694:65502..65662Clytia hemisphaericaexon
TCONS_00020873-exon-sc0000373-1491911889:65888..66039TCONS_00020873-exon-sc0000373-1491911889:65888..66039Clytia hemisphaericaexon
TCONS_00020873-exon-sc0000373-1510915933:65888..66039TCONS_00020873-exon-sc0000373-1510915933:65888..66039Clytia hemisphaericaexon
TCONS_00020873-exon-sc0000373-1575043694:65888..66039TCONS_00020873-exon-sc0000373-1575043694:65888..66039Clytia hemisphaericaexon
TCONS_00020873-exon-sc0000373-1491911889:66305..66426TCONS_00020873-exon-sc0000373-1491911889:66305..66426Clytia hemisphaericaexon
TCONS_00020873-exon-sc0000373-1510915933:66305..66426TCONS_00020873-exon-sc0000373-1510915933:66305..66426Clytia hemisphaericaexon
TCONS_00020873-exon-sc0000373-1575043694:66305..66426TCONS_00020873-exon-sc0000373-1575043694:66305..66426Clytia hemisphaericaexon
TCONS_00020873-exon-sc0000373-1491911889:66591..67090TCONS_00020873-exon-sc0000373-1491911889:66591..67090Clytia hemisphaericaexon
TCONS_00020873-exon-sc0000373-1510915933:66591..67090TCONS_00020873-exon-sc0000373-1510915933:66591..67090Clytia hemisphaericaexon
TCONS_00020873-exon-sc0000373-1575043694:66591..67090TCONS_00020873-exon-sc0000373-1575043694:66591..67090Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020873-proteinTCONS_00020873-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000373supercontigsc0000373:64590..67090 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.287868	0.272973	0.164665	0.359701	2.15859	1.69338	0.0432536	7.93286	38.2747	43.464	0.460606	1.30079	0.288444	0.459894	0.0453834	0.284943	0.0825557	0.181205	0	0.0890067	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016090PLipase_A2_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004623phospholipase A2 activity
Vocabulary: Biological Process
TermDefinition
GO:0050482arachidonic acid secretion
GO:0006644phospholipid metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050482 arachidonic acid secretion
biological_process GO:0006644 phospholipid metabolic process
molecular_function GO:0004623 phospholipase A2 activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020873 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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