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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020877 ID=TCONS_00020877|Name=TCONS_00020877|organism=Clytia hemisphaerica|type=transcript|length=1025bp
ATTTCAGGATCCTTGTCAGCCAAATCCATGTCAAAACTTTCATGATTGCA
CCAGAAATTCCACATTTCCACAAGGTTACCAGTGCAATTGTGAAGAGTTG
AAATTCATCGGCCACCAATGCCAGTGGAACATCAGCTCTGCGTTTGTCTT
CGGTGGACCAACAAGCTACATTCATTATCCGGAGATTCCAAAGTTCACTG
GTGAAGAGCTCTCCATCTGTTTCGTTATGGAAACGACAGATCAACGGCAA
CAGCAAACCATATTCCGATTATTTGATTCCCATCAATGTCAATTGGTTAC
ATCTCTTATAATTGCCAATCAGAAAATCTACGTTCGGCAACACAGATATG
GAGGTACCACCACTGTGGAGAATGGTCTCAGTATTTTCAAGAACCTTCCT
ACACCAATCTGCTATCGTTGGTTCCTCAAGGACAATCAAATGATGTGGCA
AGTCAGTGTTAGAGGTTCATTAGTCATGACTGGACCCTCCGTAATGAATC
CATCACCGATGCCCTTGAAACTGGCTCTAATGTTCGGCGACGTGAAGCTT
GATCAAACTCAAGAAGATTGTAAGGTGATTCCATCAACGGAACATTTGTT
TGAAGGGAGACTATTTTACATTATGGTTTATACAAGTTTTATTTCTGATG
ACGCAGTCAGAGCAGATTTCTCATCCAATTGGTTTGTAGATGAATCATTG
CAATTGACTACCGGAAATTTTGAGAATTATACTCAAGGTGCAGTTagtat
tggaaaaatttttggttAAAGTTTCCAGACTTtctcaaaatttcttctcg
attttgtttgtaatttttttgtgcaGTGGTTTCTCCGCAACTCTCTGTAA
CTTTTATATAGACGACAATTCCGTAGCTGCAACAACTTTTTGTATCTTGT
AGTCTTGCACGGATTTCATCCATTTATAAATctataatttctttctttct
tttaactCTCTGTAACTCGATTTTATTTCATACCCTCTTCAAAAATTAAA
GCCATAGAGAGGGGATTTACCCCCG Run BLAST on NCBI protein sequence of TCONS_00020877-protein >TCONS_00020877-protein ID=TCONS_00020877-protein|Name=TCONS_00020877-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
FQDPCQPNPCQNFHDCTRNSTFPQGYQCNCEELKFIGHQCQWNISSAFVF
GGPTSYIHYPEIPKFTGEELSICFVMETTDQRQQQTIFRLFDSHQCQLVT
SLIIANQKIYVRQHRYGGTTTVENGLSIFKNLPTPICYRWFLKDNQMMWQ
VSVRGSLVMTGPSVMNPSPMPLKLALMFGDVKLDQTQEDCKVIPSTEHLF
EGRLFYIMVYTSFISDDAVRADFSSNWFVDESLQLTTGNFENYTQGAVSI
GKIFG Run BLAST on NCBI transcript from alignment at sc0000373:93808..95067+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020877 ID=TCONS_00020877|Name=TCONS_00020877|organism=Clytia hemisphaerica|type=transcript|length=1260bp|location=Sequence derived from alignment at sc0000373:93808..95067+ (Clytia hemisphaerica)
ATTTCAGGATCCTTGTCAGCCAAATCCATGTCAAAACTTTCATGATTGCA
CCAGAAATTCCACATTTCCACAAGGTTACCAGTGCAATTGTGAAGAGTTG
AAATTCATCGGCCACCAATGCCAGTGGAGTAAGAAtctcttttcttattt
tctccttGATTGCACTTTCTGATACTCTCGATACACCCTCCATTTCAATG
ATTGTTTTGATTCATTGATTGATTTAAGTATGGCCAAATTCTTTCAAAAC
CAAAGTTTAAATAACTTGTTTAACTAGGAAATCTAACCTTCGGCTTAGTA
GAATCCTAACtaaccaaaaaaatatttcaatgaaacTATCAACAGCATAT
CTCTCCTTTCTAGACATCAGCTCTGCGTTTGTCTTCGGTGGACCAACAAG
CTACATTCATTATCCGGAGATTCCAAAGTTCACTGGTGAAGAGCTCTCCA
TCTGTTTCGTTATGGAAACGACAGATCAACGGCAACAGCAAACCATATTC
CGATTATTTGATTCCCATCAATGTCAATTGGTTACATCTCTTATAATTGC
CAATCAGAAAATCTACGTTCGGCAACACAGATATGGAGGTACCACCACTG
TGGAGAATGGTCTCAGTATTTTCAAGAACCTTCCTACACCAATCTGCTAT
CGTTGGTTCCTCAAGGACAATCAAATGATGTGGCAAGTCAGTGTTAGAGG
TTCATTAGTCATGACTGGACCCTCCGTAATGAATCCATCACCGATGCCCT
TGAAACTGGCTCTAATGTTCGGCGACGTGAAGCTTGATCAAACTCAAGAA
GATTGTAAGGTGATTCCATCAACGGAACATTTGTTTGAAGGGAGACTATT
TTACATTATGGTTTATACAAGTTTTATTTCTGATGACGCAGTCAGAGCAG
ATTTCTCATCCAATTGGTTTGTAGATGAATCATTGCAATTGACTACCGGA
AATTTTGAGAATTATACTCAAGGTGCAGTTagtattggaaaaatttttgg
ttAAAGTTTCCAGACTTtctcaaaatttcttctcgattttgtttgtaatt
tttttgtgcaGTGGTTTCTCCGCAACTCTCTGTAACTTTTATATAGACGA
CAATTCCGTAGCTGCAACAACTTTTTGTATCTTGTAGTCTTGCACGGATT
TCATCCATTTATAAATctataatttctttctttcttttaactCTCTGTAA
CTCGATTTTATTTCATACCCTCTTCAAAAATTAAAGCCATAGAGAGGGGA
TTTACCCCCG Coding sequence (CDS) from alignment at sc0000373:93808..95067+ >TCONS_00020877 ID=TCONS_00020877|Name=TCONS_00020877|organism=Clytia hemisphaerica|type=CDS|length=1536bp|location=Sequence derived from alignment at sc0000373:93808..95067+ (Clytia hemisphaerica)
TTTCAGGATCCTTGTCAGCCAAATCCATGTCAAAACTTTCATGATTGCAC
CAGAAATTCCACATTTCCACAAGGTTACCAGTGCAATTGTGAAGAGTTGA
AATTCATCGGCCACCAATGCCAGTGGAACATCAGCTCTGCGTTTGTCTTC
GGTGGACCAACAAGCTACATTCATTATCCGGAGATTCCAAAGTTCACTGG
TGAAGAGCTCTCCATCTGTTTCGTTATGGAAACGACAGATCAACGGCAAC
AGCAAACCATATTCCGATTATTTGATTCCCATCAATGTCAATTGGTTACA
TCTCTTATAATTGCCAATCAGAAAATCTACGTTCGGCAACACAGATATGG
AGGTACCACCACTGTGGAGAATGGTCTCAGTATTTTCAAGAACCTTCCTA
CACCAATCTGCTATCGTTGGTTCCTCAAGGACAATCAAATGATGTGGCAA
GTCAGTGTTAGAGGTTCATTAGTCATGACTGGACCCTCCGTAATGAATCC
ATCACCGATGCCCTTGAAACTGGCTCTAATGTTCGGCGACGTGAAGCTTG
ATCAAACTCAAGAAGATTGTAAGGTGATTCCATCAACGGAACATTTGTTT
GAAGGGAGACTATTTTACATTATGGTTTATACAAGTTTTATTTCTGATGA
CGCAGTCAGAGCAGATTTCTCATCCAATTGGTTTGTAGATGAATCATTGC
AATTGACTACCGGAAATTTTGAGAATTATACTCAAGGTGCAGTTagtatt
ggaaaaatttttggttAATTTCAGGATCCTTGTCAGCCAAATCCATGTCA
AAACTTTCATGATTGCACCAGAAATTCCACATTTCCACAAGGTTACCAGT
GCAATTGTGAAGAGTTGAAATTCATCGGCCACCAATGCCAGTGGAACATC
AGCTCTGCGTTTGTCTTCGGTGGACCAACAAGCTACATTCATTATCCGGA
GATTCCAAAGTTCACTGGTGAAGAGCTCTCCATCTGTTTCGTTATGGAAA
CGACAGATCAACGGCAACAGCAAACCATATTCCGATTATTTGATTCCCAT
CAATGTCAATTGGTTACATCTCTTATAATTGCCAATCAGAAAATCTACGT
TCGGCAACACAGATATGGAGGTACCACCACTGTGGAGAATGGTCTCAGTA
TTTTCAAGAACCTTCCTACACCAATCTGCTATCGTTGGTTCCTCAAGGAC
AATCAAATGATGTGGCAAGTCAGTGTTAGAGGTTCATTAGTCATGACTGG
ACCCTCCGTAATGAATCCATCACCGATGCCCTTGAAACTGGCTCTAATGT
TCGGCGACGTGAAGCTTGATCAAACTCAAGAAGATTGTAAGGTGATTCCA
TCAACGGAACATTTGTTTGAAGGGAGACTATTTTACATTATGGTTTATAC
AAGTTTTATTTCTGATGACGCAGTCAGAGCAGATTTCTCATCCAATTGGT
TTGTAGATGAATCATTGCAATTGACTACCGGAAATTTTGAGAATTATACT
CAAGGTGCAGTTagtattggaaaaatttttggttAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020877-exon-sc0000373-1491911889:93808..93935 | TCONS_00020877-exon-sc0000373-1491911889:93808..93935 | Clytia hemisphaerica | exon |
| TCONS_00020877-exon-sc0000373-1510915933:93808..93935 | TCONS_00020877-exon-sc0000373-1510915933:93808..93935 | Clytia hemisphaerica | exon |
| TCONS_00020877-exon-sc0000373-1575043694:93808..93935 | TCONS_00020877-exon-sc0000373-1575043694:93808..93935 | Clytia hemisphaerica | exon |
| TCONS_00020877-exon-sc0000373-1491911889:94171..95067 | TCONS_00020877-exon-sc0000373-1491911889:94171..95067 | Clytia hemisphaerica | exon |
| TCONS_00020877-exon-sc0000373-1510915933:94171..95067 | TCONS_00020877-exon-sc0000373-1510915933:94171..95067 | Clytia hemisphaerica | exon |
| TCONS_00020877-exon-sc0000373-1575043694:94171..95067 | TCONS_00020877-exon-sc0000373-1575043694:94171..95067 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000373 | supercontig | sc0000373:93808..95067 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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