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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020893 ID=TCONS_00020893|Name=TCONS_00020893|organism=Clytia hemisphaerica|type=transcript|length=1197bpRun BLAST on NCBI protein sequence of TCONS_00020893-protein >TCONS_00020893-protein ID=TCONS_00020893-protein|Name=TCONS_00020893-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp MVLWKRSNPIKYGVAVSRFNGNGHHMLPLDFGEAVLIYEETENSDWFLGCRun BLAST on NCBI transcript from alignment at sc0000373:255223..280102+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020893 ID=TCONS_00020893|Name=TCONS_00020893|organism=Clytia hemisphaerica|type=transcript|length=24880bp|location=Sequence derived from alignment at sc0000373:255223..280102+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000373:255223..280102+ >TCONS_00020893 ID=TCONS_00020893|Name=TCONS_00020893|organism=Clytia hemisphaerica|type=CDS|length=12714bp|location=Sequence derived from alignment at sc0000373:255223..280102+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020893 vs. Swiss-Prot (Human)
Match: DOCK2 (Dedicator of cytokinesis protein 2 OS=Homo sapiens GN=DOCK2 PE=1 SV=2) HSP 1 Score: 265.003 bits (676), Expect = 8.255e-78 Identity = 134/330 (40.61%), Postives = 213/330 (64.55%), Query Frame = 1
Query: 220 MVLWKRSNPIKYGVAVSRFNGNGHHMLPLDFGEAVLIYEETENSDWFLGCSLVNRNQKGIFPQSYIHIKWTIESESKDDVDVAHSKELSAVLEITSVLQEWGEIWKQLFV-KKADETDQVRKLLQDLLSRRRQVLSGALTADQLKQVKTEIGNKIDFGNKLLGLDLVVRDNEGTVIDVDSTGIIELYKMHWQSAERL-----EEPASSRKKKAPNSNMLQFNGHNLYVSMKNVVCQIDDESEVFLTLYDGREGQFISEHYMVSWTDKGMPKELDKLHNMTCLFTDLGMQDLQRDKLYIVCQIIRYGKMDMNSKEKKKSQTKDLRRPFGVA 1191
M W++++ ++GVA+ F G+G L L G+ V I E DW+ G + ++ +GIFP+S+IHIK + E + + + E+ E+T+ L EWG IWKQL+V K + QV+ ++ DL+ R Q+LSG L D+LK++K ++ +KID+GNK+L LDL+VRD +G ++D D+T +I L+ H ++ +++ EE + + A S + H+LYV ++N VC+I +++E+F++LYD + ISE+Y+V W +G PKE++ L+N+ +FTDLG +DL RDK+Y++CQI+R GKMD+ KK T+ LRRPFGVA
Sbjct: 1 MAPWRKADKERHGVAIYNFQGSGAPQLSLQIGDVVRIQETC--GDWYRGYLIKHKMLQGIFPKSFIHIK-EVTVEKRRNTENIIPAEIPLAQEVTTTLWEWGSIWKQLYVASKKERFLQVQSMMYDLMEWRSQLLSGTLPKDELKELKQKVTSKIDYGNKILELDLIVRDEDGNILDPDNTSVISLFHAHEEATDKITERIKEEMSKDQPDYAMYSRISSSPTHSLYVFVRNFVCRIGEDAELFMSLYDPNKQTVISENYLVRWGSRGFPKEIEMLNNLKVVFTDLGNKDLNRDKIYLICQIVRVGKMDLKDTGAKKC-TQGLRRPFGVA 326 The following BLAST results are available for this feature:
BLAST of TCONS_00020893 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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