TCONS_00020900 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020900
Unique NameTCONS_00020900
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length894

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020900 ID=TCONS_00020900|Name=TCONS_00020900|organism=Clytia hemisphaerica|type=transcript|length=894bp
tttagctagaaaaaaagaataaattaaaaataaaaagttatgtcAGGCAA
AAAGATTTTAACTTTTGTGACtggaaatgaaaacaaattgaaAGAAGTCA
TCCAAATCCTTGGTGATTCATTTCCATTCCAGATTGTATCTCAAAAGATT
GATCTGCCAGAACTTCAAGGAGAACCAGATGACATTAGCCGTGAAAAATG
TCGACTTGCTGCAAAAGAAGTTAAAGGTCCGGTCATTTGTGAGGACACTT
GTTTATGTTTTAATGCTCTGAAGGGTCTTCCTGGTCCTTATATTAAATGG
TTTTTAGATAAACTAAAGCCTGAAGGTTTACATAAAATGTTATCAGCGTA
CGATGATAAAACAGCTTATGCATTATGTACATTTGCATACTCAACTGGAA
ATCCTGAAGATGAAATCATTCTCTTTCATGGGCAAACTGATGGCCAAATA
GTAGAGCCGCGAGGACCAAGGACCTTCGGCTGGGACCCTTGCTTTTTACC
AGATGGTTTTGACAAAACGTATGCGGAATTAGATAAGGATGTTAAGAATT
CAATTTCACATCGGGGACGTTCTCTTGATAAACTTCGAAGTTTTTTCGCT
GATAAAGAGAAAGTGAAAGAAGATGGTGGTGAACCTGGTGCAAAGAAACC
TCGAAAATCTGAGGATTGAAATTtaggattatctttttaacacTTAGGAT
GCatatgttatattttttatctCATGTTCTTTTATTACACGCAAAGATTT
TGATTGATTACATCAAAAGGTTAATGAACTTTTTCTCTATCAACCATATA
GTTGGcgtttttgaaatttctatcattttcaacagaacaaaggctttaga
ataCCTATTGTGTTTTTCAGGTATTAAGTTCATTGCTTTTAGCA
Run BLAST on NCBI

protein sequence of TCONS_00020900-protein

>TCONS_00020900-protein ID=TCONS_00020900-protein|Name=TCONS_00020900-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MSGKKILTFVTGNENKLKEVIQILGDSFPFQIVSQKIDLPELQGEPDDIS
REKCRLAAKEVKGPVICEDTCLCFNALKGLPGPYIKWFLDKLKPEGLHKM
LSAYDDKTAYALCTFAYSTGNPEDEIILFHGQTDGQIVEPRGPRTFGWDP
CFLPDGFDKTYAELDKDVKNSISHRGRSLDKLRSFFADKEKVKEDGGEPG
AKKPRKSED
Run BLAST on NCBI

transcript from alignment at sc0000373:156897..157888-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020900 ID=TCONS_00020900|Name=TCONS_00020900|organism=Clytia hemisphaerica|type=transcript|length=992bp|location=Sequence derived from alignment at sc0000373:156897..157888- (Clytia hemisphaerica)
TTTAGCTAGAAAAAAAGAATAAATTAAAAATAAAAAGTTATGTCAGGCAA
AAAGATTTTAACTTTTGTGACTGGAAATGAAAACAAATTGAAAGAAGTCA
TCCAAATCCTTGGTGATTCATTTCCATTCCAGATTGTATCTCAAAAGATT
GATCTGCCAGAACTTCAAGGAGAACCAGATGACATTAGCCGTGAAAAATG
TCGACTTGCTGCAAAAGAAGTTAAAGGTCCGGTCATTTGTGAGGACACTT
GTTTATGTTTTAATGCTCTGAAGGGTCTTCCTGGTCCTTATATTAAATGG
TTTTTAGATAAACTAAAGCCTGAAGGTTTACATAAAATGTTATCAGCGTA
CGATGATAAAACAGCTTATGCATTATGTACATTTGCATACTCAACTGGAA
ATCCTGAAGATGAAATCATTCTCTTTCATGGGCAAACTGATGGCCAAATA
GTAGAGCCGCGAGGACCAAGGACCTTCGGCTGGGACCCTTGCTTTTTACC
AGATGGTTTTGACAAAACGTATGCGGAATTAGATAAGGATGTTAAGAATT
CAATTTCACATCGAGGACGTTCTCTTGATAAACTTCGAAGTTTTTTCGCT
GATAAAGAGAAAGTGAATGAAGATGGTGGTGAACCTGGTNTAAGAATTCA
ATTTCACATCGGGGACGTTCTCTTGATAAACTTCGAAGTTTTTTCGCTGA
TAAAGAGAAAGTGAAAGAAGATGGTGGTGAACCTGGTGCAAAGAAACCTC
GAAAATCTGAGGATTGAAATTTAGGATTATCTTTTTAACACTTAGGATGC
ATATGTTATATTTTTTATCTCATGTTCTTTTATTACACGCAAAGATTTTG
ATTGATTACATCAAAAGGTTAATGAACTTTTTCTCTATCAACCATATAGT
TGGCGTTTTTGAAATTTCTATCATTTTCAACAGAACAAAGGCTTTAGAAT
ACCTATTGTGTTTTTCAGGTATTAAGTTCATTGCTTTTAGCA

Coding sequence (CDS) from alignment at sc0000373:156897..157888-

>TCONS_00020900 ID=TCONS_00020900|Name=TCONS_00020900|organism=Clytia hemisphaerica|type=CDS|length=1260bp|location=Sequence derived from alignment at sc0000373:156897..157888- (Clytia hemisphaerica)
ATCGGGGACGTTCTCTTGATAAACTTCGAAGTTTTTTCGCTGATAAAGAG
AAAGTGAAAGAAGATGGTGGTGAACCTGGTGCAAAGAAACCTCGAAAATC
TGAGGATTGAATGTCAGGCAAAAAGATTTTAACTTTTGTGACTGGAAATG
AAAACAAATTGAAAGAAGTCATCCAAATCCTTGGTGATTCATTTCCATTC
CAGATTGTATCTCAAAAGATTGATCTGCCAGAACTTCAAGGAGAACCAGA
TGACATTAGCCGTGAAAAATGTCGACTTGCTGCAAAAGAAGTTAAAGGTC
CGGTCATTTGTGAGGACACTTGTTTATGTTTTAATGCTCTGAAGGGTCTT
CCTGGTCCTTATATTAAATGGTTTTTAGATAAACTAAAGCCTGAAGGTTT
ACATAAAATGTTATCAGCGTACGATGATAAAACAGCTTATGCATTATGTA
CATTTGCATACTCAACTGGAAATCCTGAAGATGAAATCATTCTCTTTCAT
GGGCAAACTGATGGCCAAATAGTAGAGCCGCGAGGACCAAGGACCTTCGG
CTGGGACCCTTGCTTTTTACCAGATGGTTTTGACAAAACGTATGCGGAAT
TAGATAAGGATGTTAAGAATTCAATTTCACATCGGGGACGTTCTCTTGAT
AAACTTCGAAGTTTTTTCGCTGATAAAGAGAAAGTGAAAGAAGATGGTGG
TGAACCTGGTGCAAAGAAACCTCGAAAATCTGAGGATTGAATGTCAGGCA
AAAAGATTTTAACTTTTGTGACTGGAAATGAAAACAAATTGAAAGAAGTC
ATCCAAATCCTTGGTGATTCATTTCCATTCCAGATTGTATCTCAAAAGAT
TGATCTGCCAGAACTTCAAGGAGAACCAGATGACATTAGCCGTGAAAAAT
GTCGACTTGCTGCAAAAGAAGTTAAAGGTCCGGTCATTTGTGAGGACACT
TGTTTATGTTTTAATGCTCTGAAGGGTCTTCCTGGTCCTTATATTAAATG
GTTTTTAGATAAACTAAAGCCTGAAGGTTTACATAAAATGTTATCAGCGT
ACGATGATAAAACAGCTTATGCATTATGTACATTTGCATACTCAACTGGA
AATCCTGAAGATGAAATCATTCTCTTTCATGGGCAAACTGATGGCCAAAT
AGTAGAGCCGCGAGGACCAAGGACCTTCGGCTGGGACCCTTGCTTTTTAC
CAGATGGTTTTGACAAAACGTATGCGGAATTAGATAAGGATGTTAAGAAT
TCAATTTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011723XLOC_011723Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020900-proteinTCONS_00020900-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020900-exon-sc0000373-1575043694:157330..157888TCONS_00020900-exon-sc0000373-1575043694:157330..157888Clytia hemisphaericaexon
TCONS_00020900-exon-sc0000373-1575043694:156897..157231TCONS_00020900-exon-sc0000373-1575043694:156897..157231Clytia hemisphaericaexon
TCONS_00020900-exon-sc0000373-1510915933:157330..157888TCONS_00020900-exon-sc0000373-1510915933:157330..157888Clytia hemisphaericaexon
TCONS_00020900-exon-sc0000373-1510915933:156897..157231TCONS_00020900-exon-sc0000373-1510915933:156897..157231Clytia hemisphaericaexon
TCONS_00020900-exon-sc0000373-1491911889:157330..157888TCONS_00020900-exon-sc0000373-1491911889:157330..157888Clytia hemisphaericaexon
TCONS_00020900-exon-sc0000373-1491911889:156897..157231TCONS_00020900-exon-sc0000373-1491911889:156897..157231Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000373supercontigsc0000373:156897..157888 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
55.4998	47.1297	35.5564	38.2174	30.2777	21.6878	20.4053	23.2824	25.5782	20.2266	15.137	15.4907	15.2761	17.2477	12.9107	16.5874	13.0219	17.6481	8.97568	8.42583	5.8552	7.98385	27.7529	27.0107	22.4	21.2847	10.8714	7.91393	9.84836	9.62562
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002637Ham1p-like
IPR029001ITPase-like_fam
IPR027502ITPase
Vocabulary: Biological Process
TermDefinition
GO:0009143nucleoside triphosphate catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0047429nucleoside-triphosphate diphosphatase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009143 nucleoside triphosphate catabolic process
molecular_function GO:0047429 nucleoside-triphosphate diphosphatase activity
Blast
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BLAST of TCONS_00020900 vs. Swiss-Prot (Human)
Match: ITPA (Inosine triphosphate pyrophosphatase OS=Homo sapiens GN=ITPA PE=1 SV=2)

HSP 1 Score: 263.077 bits (671), Expect = 2.671e-87
Identity = 120/188 (63.83%), Postives = 155/188 (82.45%), Query Frame = 1 
Query:   40 MSGKKILTFVTGNENKLKEVIQILGDSFPFQIVSQKIDLPELQGEPDDISREKCRLAAKEVKGPVICEDTCLCFNALKGLPGPYIKWFLDKLKPEGLHKMLSAYDDKTAYALCTFAYSTGNPEDEIILFHGQTDGQIVEPRGPRTFGWDPCFLPDGFDKTYAELDKDVKNSISHRGRSLDKLRSFFAD 603
            + GKKI+ FVTGN  KL+EV+QILGD FP  +V+QKIDLPE QGEPD+IS +KC+ A ++V+GPV+ EDTCLCFNAL GLPGPYIKWFL+KLKPEGLH++L+ ++DK+AYALCTFA STG+P   + LF G+T G+IV PRG + FGWDPCF PDG+++TYAE+ K  KN++SHR R+L +L+ +F  
Sbjct:    5 LVGKKIV-FVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEAVRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFALSTGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFRALLELQEYFGS 191
The following BLAST results are available for this feature:
BLAST of TCONS_00020900 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ITPA2.671e-8763.83Inosine triphosphate pyrophosphatase OS=Homo sapie... [more]
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