TCONS_00020952 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020952
Unique NameTCONS_00020952
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length342

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020952 ID=TCONS_00020952|Name=TCONS_00020952|organism=Clytia hemisphaerica|type=transcript|length=342bp
TAGAAATTGATACAATTTTAGAAAGTGGAAGGGGTAGGAAAGACAAATGA
AATATGCACTCCTGACTTTTCAAGATGAAGAAAAGACGGTATATTTGGAT
TGTGCTGGCCCTTCTtgtttctttcaaagaattcgcCAAAGCAACATGTC
CAGCAGAATTTTTTGAATACCAGTCAATATGCTATCACAGAGGCTCAAGT
GCAGTGACTCATGCTCAAGCACAAGCTTACTGCACTGGTAAGTAAAATTT
GTTAATAGATTATTCATTCTAGTTcagatgagctggagtttttataagat
acttgaCTAATtagtcatttgaagtaatagtaGTAGAGCGTT
Run BLAST on NCBI

transcript from alignment at sc0000374:114261..118824-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020952 ID=TCONS_00020952|Name=TCONS_00020952|organism=Clytia hemisphaerica|type=transcript|length=4564bp|location=Sequence derived from alignment at sc0000374:114261..118824- (Clytia hemisphaerica)
TAGAAATTGATACAATTTTAGAAAGTGGAAGGGGTAGGAAAGACAAATGA
AATATGCACTCCTGACTTTTCAAGATGAAGAAAAGACGGTGTAAGATATT
TTTGATACATTTTTTTAAAGGTTTTTATGCTATTCTAATTCTTTAATTCA
GATGAAACAATTTTCTTTGCTTAATTTTGTCAAATATAAATAATTTTTGA
TTTCCATATCTGAAATGTACTAGCAGTAACATGGTTCGAAAGGGTGATTT
GGGATGAATCACCACGAGGTTAATCGAAAAGTATTTCAAAATATCATTAT
TTCTTTTTTCCTAAAGTATATTTTTTAATGCCGTTTTTTATTATTAAAAT
TAAAGAATTAAAATCCGACTTCCCTCAAAGTCAAACCATATTTTTTTAAC
CAATAATATTTTTCGTTTTCGTTGGTGCGATTACAAAAAAGCAGGGCTAT
TAGTATTACTAGTATATACACCCCATTCTCACAGACCCACTGGGAACCCT
TCACACTGGGAAATTTGGCCAAAATATCGTCCCCAATGAAAAATTATACT
TTAGGCTTACAAACTTTCGCTAGCAGAAACGAGAACGAAAAATCGCGAAA
TTCACGACATTTTACTTTCGCGAATTTAACGGAAAGATTTTTTTCGCGAG
CATAAACTTTCACGAATCAAGACGTAAAATTGAGAATTTTCACATGAAAA
AATGGCTTAGAGGGACAAATACTTCTTGGATTGGCTTGAAACATTTGTTC
TTTGACTTATTAGTCTTTTAGCAGGCATTTTATTCAAGGTTTTAAATTTT
GCAGATTTTCTATTTTGTCAAATTTTTTTGCGAGCATAAAATTTCGCGAA
TGGCCCTTCCTAGAATTTTTAAGGACATTTACTTTCGCGAAGATCGCGAA
AGTTTCTACTCGTGAAAGTTTGTACGCCTAAAGTACTCCAATTTTGCTAT
TTTTTTCAGCCTCACCGAATTTTCCGACTTGAAAACAAAATAATTTAAAT
CCCTAGTCATAAATAATATGGGAATATCAATACCCATCGAGTTAGAGTCC
GTTATTTTTACCCCTACTGGCTGAAAAACCTACCGGGTCTGTGAGAAGGG
GGTGTATTACTGATTGACAAACCCCCAATCTTTCCTTACATCTCAAAGCT
AAATGTAATTAGCCATAATGTATCAGACAATGTTCGGACATTACAGTTTA
AAACAAGCTGGTCCGATACACTATGCATGGACAACAAAAATTTGAAATGC
TAAAAAAACGCTATAAAGAAAAGCGGATCGAAATAGATACGCTTCACTAT
TTTAATCGGGATGGAAGTACTCCTAGCCTATACGAGACGTCACCTGCGTT
TTTCTACGCAATAATGAATTAAGTATGATTTTTGTTACGGATCGAGTGTG
TTCATATTAGTTTCGGAACGTTTCGGAGCAAGAAAACGGAGCTGCTCCGT
TCCGATGAAAAAAGTGGAGCGAAACCGTTTCGATCTGTTTTGTATTGTAA
CGTCTTCTTTTTTGACGTTTCGAATTTTGACGTTCACACTTGTTTCGGAA
CCGTATCGTTTCGGAACGGAATGGAACCGTAACGTCTGAACATGGTCTTA
ACGTCTATTCCACTTTGCAACTTTTTCAAATGNGTTTCGGAACCGTATCG
TTTCAGAATGGAATGGAACCGTAACGTCTGAACATGGTCTTAACGTCTAT
TCCACTTTGCAACTTTTTCAAATGTTTGGAGTTCAGCTTTTCGATTTTTT
GACGTCAGTTTTAACGTTCGAAGCTCCTGCAGTTAGCGAAAAAAACGAAT
TTGCGTCAAAGCATTTCAAAGGATTCTATTTTTCAAAAATTGACAAAGTG
CAAGTGGGTGGAACTCACCAAGAAACAGAATAAAAAGTCCTGGTTTTTGG
TGAGGTGTTCGCTAAACTGCTCTGTTCTCTTAAAGACTTTAGCCCTTTAG
GACAGTCATTTTCTCATACTCACAAATCGGGGAAATAAGCTGAAACAGGG
ATAATAACATCGGGAAAAAGCCGTGAGATTAGGTTTTAAAATGACATTAG
GTTAACGTAAGCTGCTGCGTCATAGGTGGTTAGTCTTATTCTGTTTGCTC
CGAAATGTTTCAAAACCAATGAACACTTCCTATAACATAATCATTACTGC
AGAGATGCTAAACTGTAGAGCATGGTCTTTACCTTATGGGAATAACTTAA
TGCAAGAATAAATCAATACGGAATTAATTAATGCAACTTTGGCCCGCAAA
AATTAATTCCTCAAAAATTTAAAATTTCGGTCGTTTGCATTAATAAAATT
CGCATTTTTTTCTGCTTTTGAGGTGCAAGCCCTAAATATCTATTTTTTGG
AATCTATGTGCTTAAACTTGTATCATATTTGACATTGTTATGTTACTTAA
TAAGGACCCAAAAACCAGTTGCTAGAATGCAAAAATGAAAGACATGGACC
AATGAAGTAAAACGAGATTATTAAAATCAATTATTTCACATTTATTAACT
CTGCAAAATCCCTAAAATTAGGCCTATTCGCATTAATTAGTTCCACAAAA
TTCGTTCCACAAAACATAATTTTTTGGGGGGTTGCTCGCATTCATTGTTT
CCGCATTAATTTATTCTCGCATTAATTCATTTTCAAGATAGAATTTTTTC
TGTATTATTTCGTCAAAAACGCTTTGTATAGTGTTGCGCTATAATTTCTG
ACATCATAAAAAATATATTAAGCTACTTTATAAAAATATATGCTGTTTAA
GGCCAACTCACTATGTTTATATACTAAATTTTTTTCAAATTGATTTCTTT
AGATATTTGGATTGTGCTGGCCCTTCTTGTTTCTTTCAAAGAATTCGCCA
AAGCAAGTAAGTAATTATTAGGTTTAATCAAGCCAGAGGAATGTAAAGAG
ATGGAAAACAGCTTAATGATAACAATGGAAAAACGGCTCGTCATATACCA
GGTCTCTTGCCCTTAAGGGAGTTTATGTTGAGTTAATAGGTTTCTTTTGT
TGTCGCTATAAAAAATCTGCATAATTAGTGTGTTGTGACAAAATTCTTTT
GTTTCAAGCCTGATTATGCGTAAACTTTTAGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTATACGAATCGACATGTTTCGCTCATCGGAAAACAAAA
TTATCCATGACAACGAAACGAGTGCAAATCCCATAAAAGCAATAAGTTTA
AAAGCTTCTTTCAAAATATTGAAATAAATTTGTTAGAAATGCGAGTTTTT
CATTCAGACCCTTTATGAAGTATTTTATTAAAATTACGTCATAAACTGTT
TGTCATTGTTGCTGTCAGCTCGAAAAGTCTCAATACTTTCATTCGAGGGG
GGCTTCAGGGGGTACCCGAATCTGCAATTCCACCAATTTTTTCTCCAATT
TCCGTCGAACCGTCTAAAAATTAACCGTAATTCCGTCACTGAAAATTCCT
TTGAGATTCAAAATTTTTGTCAAAAATTCGACGAATTTTGAATTATTTTT
GCTAATTCCGAAATTCCGCAAATTGTTCTGCTAAATTACGTTTTTCCGGA
CTAAAATTGTCTAATTTTCCGTCTCCGTCAGAAACTCAATTTCCGTAATT
CCGTCTGAATTTTCGCCAAATTCCGCCACTCCGTCCGAAAAAAGGACCGA
TTCCACTTCTCCGCCAACCATGAAACCCCCCACCAACCATAAAACCCTTT
ATTCGCCCATTATTCGGGGGCCCATTTCCTGGAGGAAATTTTTTTATGAC
CGTGAAATATCACATCATGAGAATATCTTAATCTAAACGATGATCTTTTC
TTTTATTCTACTTTAGCATGTCCAGCAGAATTTTTTGAATACCAGTCAAT
ATGCTATCACAGAGGCTCAAGTGCAGTGACTCATGCTCAAGCACAAGCTT
ACTGCACTGGTAAGTAAAATTTGTTAATAGATTATTCATTCTAGTTCAGA
TGAGCTGGAGTTTTTATAAGATACTTGACTAATTAGTCATTTGAAGTAAT
AGTAGTAGAGCGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011748XLOC_011748Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020952-exon-sc0000374-1575043694:118735..118824TCONS_00020952-exon-sc0000374-1575043694:118735..118824Clytia hemisphaericaexon
TCONS_00020952-exon-sc0000374-1575043694:115969..116022TCONS_00020952-exon-sc0000374-1575043694:115969..116022Clytia hemisphaericaexon
TCONS_00020952-exon-sc0000374-1575043694:114261..114458TCONS_00020952-exon-sc0000374-1575043694:114261..114458Clytia hemisphaericaexon
TCONS_00020952-exon-sc0000374-1510915933:118735..118824TCONS_00020952-exon-sc0000374-1510915933:118735..118824Clytia hemisphaericaexon
TCONS_00020952-exon-sc0000374-1510915933:115969..116022TCONS_00020952-exon-sc0000374-1510915933:115969..116022Clytia hemisphaericaexon
TCONS_00020952-exon-sc0000374-1510915933:114261..114458TCONS_00020952-exon-sc0000374-1510915933:114261..114458Clytia hemisphaericaexon
TCONS_00020952-exon-sc0000374-1491911889:118735..118824TCONS_00020952-exon-sc0000374-1491911889:118735..118824Clytia hemisphaericaexon
TCONS_00020952-exon-sc0000374-1491911889:115969..116022TCONS_00020952-exon-sc0000374-1491911889:115969..116022Clytia hemisphaericaexon
TCONS_00020952-exon-sc0000374-1491911889:114261..114458TCONS_00020952-exon-sc0000374-1491911889:114261..114458Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000374supercontigsc0000374:114261..118824 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.449568	0.278431	0	0	5.14478	4.97443	0.757343	0.975294	0.400494	0	10.2081	7.71484	1.03163	1.50958	0	0.556122	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020952 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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