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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021013 ID=TCONS_00021013|Name=TCONS_00021013|organism=Clytia hemisphaerica|type=transcript|length=1660bp
CATCGTTTACATTCGGAAACCAATAGTTCTCCGTATGGTGAATTGAGAAG
GTTTCATCTAAATCTCCACCACAGAAATTACACTTTCTACCCCGCCTTGT
GGTTGTTCGGTAAACAACGAAGGGATTTTTGGACACCGGAACTCGTGGCT
TTCGTCCAAGAGATCCGCCGGGTGGGATTATGGGTCTCCCGAATTGATTG
GTGTTGTTAATTGCTGGTTGGGTATGGGTCAATGTTTGAAGCACAACTGA
ACTGTATTGATTTTGTGTAGGGATGTACGACACAGATGGATGAGGTTGTT
GAATCTCGGGAATAGCAGCATTTTGAACCGTTGGCAATGGTGGAAAAGAA
GGCTGATACGACGGTACAGTCTGCTGACATGTAGGAAAATGGGGCTGATG
CGAAGGTGCGATTTGCTGGTATGAAGGAAAATTGGGTTGAAACGGTTGCA
GAGTCGGCGTACGAATGGCAGCGGTCAAGGATATCTTAACTGGGCTAGGG
TGGTTTTCTCGTTGGCGCTTTCGCGTAGGCACTTTTTTTCCGGTCACCTT
TTTATTGATGTTTGAGGAAGCTGCTTTGGTCAATGTTGTTCCGCTTTTCA
TACGTTTCAAGAACGAAACGTATTTCTCCATCTGATTTTCTTTAAGCGCC
ACGGCTAGACAATGACCACAATAACCTCGTGTAGTGAACCTTTGACAACT
GTTGTCGCAGATGAATTTCCCGTTAGGTGCGGTTTTTATGACATGGGGGA
CATGTGGATGCTGAGTTGACTTCACGAAGTAAGTTCCAGAAGCATATCCT
TTCATAATCGATTGGTTTTCGTTCAGCATAACAGCTTTTGACATTGACCC
AAGGATATTTTCGTGTGATTCATTGGGCATGGCCTCGTGGAGTCGGAGCC
ATGTGTTGTCGTCCTGATGAACGATATCGCCCGGCATTGGTGCATCACCC
TCGTCGATAATCTCAATGATGTCATGGGCTGCCTCAATTTCATCTGCTTG
TTTTCGAGCTCTGCTGACCACATGTTCGCCTACTTTAAATTGCATGACGG
ACTGGTAGACTTCTGGGTCTACGATGATGTTGAGGATACGTTCTTTGTAG
CGATCTTTTTCGGGTTGAGTAAGCTGGCTGTACTTTGAGAATGGCATCAT
GTGGTGTTTAAACTCTTCTCTAACGTCAAATCGGCTCTTCAATCCTAGGA
ATGCCTCCAAGATTTCGGATTCTTCTGCGTCGATGATTGATTCGTACACT
TTCGCGAATTCTGAAAAGTCCACCTTGTTAAATGACTGCCATTCCTTTAG
CAGTCTGTTCTTTGATTCGGTTCGATTGTTGTAGAAATGGTTTTTCTCAT
CACACAGTGCTGCATTTCGAACGGCAGCGGTTGTTGAGTGATATCTGACG
ACATCCTTTTTGAACGAGTTGAAGTATGTAACGAAGGCTTTCAAATCAGG
ATCTGaataggaaattacaaaattaacTAGGGACTGAAAAGTTTGAGCAT
GACATGGTTTGAAATCGAAAGGCATGGAATAATCAGATTTCCGAGATTTG
AAAAAGTTGGTAGGCtattaaaaaaacaacttaATGGATTACTACCTGAA
GTGGATTGATATAATTTGgtgattttcggcaaaattagtAAAATTAAATC
CCCATTTCCC Run BLAST on NCBI protein sequence of TCONS_00021013-protein >TCONS_00021013-protein ID=TCONS_00021013-protein|Name=TCONS_00021013-protein|organism=Clytia hemisphaerica|type=polypeptide|length=508bp
MPFDFKPCHAQTFQSLVNFVISYSDPDLKAFVTYFNSFKKDVVRYHSTTA
AVRNAALCDEKNHFYNNRTESKNRLLKEWQSFNKVDFSEFAKVYESIIDA
EESEILEAFLGLKSRFDVREEFKHHMMPFSKYSQLTQPEKDRYKERILNI
IVDPEVYQSVMQFKVGEHVVSRARKQADEIEAAHDIIEIIDEGDAPMPGD
IVHQDDNTWLRLHEAMPNESHENILGSMSKAVMLNENQSIMKGYASGTYF
VKSTQHPHVPHVIKTAPNGKFICDNSCQRFTTRGYCGHCLAVALKENQME
KYVSFLKRMKSGTTLTKAASSNINKKVTGKKVPTRKRQRENHPSPVKISL
TAAIRTPTLQPFQPNFPSYQQIAPSHQPHFPTCQQTVPSYQPSFPPLPTV
QNAAIPEIQQPHPSVSYIPTQNQYSSVVLQTLTHTQPAINNTNQFGRPII
PPGGSLGRKPRVPVSKNPFVVYRTTTRRGRKCNFCGGDLDETFSIHHTEN
YWFPNVND Run BLAST on NCBI transcript from alignment at sc0000376:22573..24232 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021013 ID=TCONS_00021013|Name=TCONS_00021013|organism=Clytia hemisphaerica|type=transcript|length=1660bp|location=Sequence derived from alignment at sc0000376:22573..24232 (Clytia hemisphaerica)
GGGAAATGGGGATTTAATTTTactaattttgccgaaaatcacCAAATTAT
ATCAATCCACTTCAGGTAGTAATCCATtaagttgtttttttaataGCCTA
CCAACTTTTTCAAATCTCGGAAATCTGATTATTCCATGCCTTTCGATTTC
AAACCATGTCATGCTCAAACTTTTCAGTCCCTAgttaattttgtaatttc
ctattCAGATCCTGATTTGAAAGCCTTCGTTACATACTTCAACTCGTTCA
AAAAGGATGTCGTCAGATATCACTCAACAACCGCTGCCGTTCGAAATGCA
GCACTGTGTGATGAGAAAAACCATTTCTACAACAATCGAACCGAATCAAA
GAACAGACTGCTAAAGGAATGGCAGTCATTTAACAAGGTGGACTTTTCAG
AATTCGCGAAAGTGTACGAATCAATCATCGACGCAGAAGAATCCGAAATC
TTGGAGGCATTCCTAGGATTGAAGAGCCGATTTGACGTTAGAGAAGAGTT
TAAACACCACATGATGCCATTCTCAAAGTACAGCCAGCTTACTCAACCCG
AAAAAGATCGCTACAAAGAACGTATCCTCAACATCATCGTAGACCCAGAA
GTCTACCAGTCCGTCATGCAATTTAAAGTAGGCGAACATGTGGTCAGCAG
AGCTCGAAAACAAGCAGATGAAATTGAGGCAGCCCATGACATCATTGAGA
TTATCGACGAGGGTGATGCACCAATGCCGGGCGATATCGTTCATCAGGAC
GACAACACATGGCTCCGACTCCACGAGGCCATGCCCAATGAATCACACGA
AAATATCCTTGGGTCAATGTCAAAAGCTGTTATGCTGAACGAAAACCAAT
CGATTATGAAAGGATATGCTTCTGGAACTTACTTCGTGAAGTCAACTCAG
CATCCACATGTCCCCCATGTCATAAAAACCGCACCTAACGGGAAATTCAT
CTGCGACAACAGTTGTCAAAGGTTCACTACACGAGGTTATTGTGGTCATT
GTCTAGCCGTGGCGCTTAAAGAAAATCAGATGGAGAAATACGTTTCGTTC
TTGAAACGTATGAAAAGCGGAACAACATTGACCAAAGCAGCTTCCTCAAA
CATCAATAAAAAGGTGACCGGAAAAAAAGTGCCTACGCGAAAGCGCCAAC
GAGAAAACCACCCTAGCCCAGTTAAGATATCCTTGACCGCTGCCATTCGT
ACGCCGACTCTGCAACCGTTTCAACCCAATTTTCCTTCATACCAGCAAAT
CGCACCTTCGCATCAGCCCCATTTTCCTACATGTCAGCAGACTGTACCGT
CGTATCAGCCTTCTTTTCCACCATTGCCAACGGTTCAAAATGCTGCTATT
CCCGAGATTCAACAACCTCATCCATCTGTGTCGTACATCCCTACACAAAA
TCAATACAGTTCAGTTGTGCTTCAAACATTGACCCATACCCAACCAGCAA
TTAACAACACCAATCAATTCGGGAGACCCATAATCCCACCCGGCGGATCT
CTTGGACGAAAGCCACGAGTTCCGGTGTCCAAAAATCCCTTCGTTGTTTA
CCGAACAACCACAAGGCGGGGTAGAAAGTGTAATTTCTGTGGTGGAGATT
TAGATGAAACCTTCTCAATTCACCATACGGAGAACTATTGGTTTCCGAAT
GTAAACGATG Coding sequence (CDS) from alignment at sc0000376:22573..24232 >TCONS_00021013 ID=TCONS_00021013|Name=TCONS_00021013|organism=Clytia hemisphaerica|type=CDS|length=1524bp|location=Sequence derived from alignment at sc0000376:22573..24232 (Clytia hemisphaerica)
ATGCCTTTCGATTTCAAACCATGTCATGCTCAAACTTTTCAGTCCCTAgt
taattttgtaatttcctattCAGATCCTGATTTGAAAGCCTTCGTTACAT
ACTTCAACTCGTTCAAAAAGGATGTCGTCAGATATCACTCAACAACCGCT
GCCGTTCGAAATGCAGCACTGTGTGATGAGAAAAACCATTTCTACAACAA
TCGAACCGAATCAAAGAACAGACTGCTAAAGGAATGGCAGTCATTTAACA
AGGTGGACTTTTCAGAATTCGCGAAAGTGTACGAATCAATCATCGACGCA
GAAGAATCCGAAATCTTGGAGGCATTCCTAGGATTGAAGAGCCGATTTGA
CGTTAGAGAAGAGTTTAAACACCACATGATGCCATTCTCAAAGTACAGCC
AGCTTACTCAACCCGAAAAAGATCGCTACAAAGAACGTATCCTCAACATC
ATCGTAGACCCAGAAGTCTACCAGTCCGTCATGCAATTTAAAGTAGGCGA
ACATGTGGTCAGCAGAGCTCGAAAACAAGCAGATGAAATTGAGGCAGCCC
ATGACATCATTGAGATTATCGACGAGGGTGATGCACCAATGCCGGGCGAT
ATCGTTCATCAGGACGACAACACATGGCTCCGACTCCACGAGGCCATGCC
CAATGAATCACACGAAAATATCCTTGGGTCAATGTCAAAAGCTGTTATGC
TGAACGAAAACCAATCGATTATGAAAGGATATGCTTCTGGAACTTACTTC
GTGAAGTCAACTCAGCATCCACATGTCCCCCATGTCATAAAAACCGCACC
TAACGGGAAATTCATCTGCGACAACAGTTGTCAAAGGTTCACTACACGAG
GTTATTGTGGTCATTGTCTAGCCGTGGCGCTTAAAGAAAATCAGATGGAG
AAATACGTTTCGTTCTTGAAACGTATGAAAAGCGGAACAACATTGACCAA
AGCAGCTTCCTCAAACATCAATAAAAAGGTGACCGGAAAAAAAGTGCCTA
CGCGAAAGCGCCAACGAGAAAACCACCCTAGCCCAGTTAAGATATCCTTG
ACCGCTGCCATTCGTACGCCGACTCTGCAACCGTTTCAACCCAATTTTCC
TTCATACCAGCAAATCGCACCTTCGCATCAGCCCCATTTTCCTACATGTC
AGCAGACTGTACCGTCGTATCAGCCTTCTTTTCCACCATTGCCAACGGTT
CAAAATGCTGCTATTCCCGAGATTCAACAACCTCATCCATCTGTGTCGTA
CATCCCTACACAAAATCAATACAGTTCAGTTGTGCTTCAAACATTGACCC
ATACCCAACCAGCAATTAACAACACCAATCAATTCGGGAGACCCATAATC
CCACCCGGCGGATCTCTTGGACGAAAGCCACGAGTTCCGGTGTCCAAAAA
TCCCTTCGTTGTTTACCGAACAACCACAAGGCGGGGTAGAAAGTGTAATT
TCTGTGGTGGAGATTTAGATGAAACCTTCTCAATTCACCATACGGAGAAC
TATTGGTTTCCGAATGTAAACGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021013-exon-sc0000376-1491911889:22573..24232 | TCONS_00021013-exon-sc0000376-1491911889:22573..24232 | Clytia hemisphaerica | exon |
| TCONS_00021013-exon-sc0000376-1510915933:22573..24232 | TCONS_00021013-exon-sc0000376-1510915933:22573..24232 | Clytia hemisphaerica | exon |
| TCONS_00021013-exon-sc0000376-1575043694:22573..24232 | TCONS_00021013-exon-sc0000376-1575043694:22573..24232 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000376 | supercontig | sc0000376:22573..24232 . |
Blast
The following BLAST results are available for this feature:
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