TCONS_00021027 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021027
Unique NameTCONS_00021027
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length419

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021027 ID=TCONS_00021027|Name=TCONS_00021027|organism=Clytia hemisphaerica|type=transcript|length=419bp
CGTCTGTAAGTAACCGTACTGATACTTAAAGCATAATTATCAGAAAAACA
CAAGCCAAAAGTATCCATCTCTCTCTCTATTTCTCTTTCTTCTCAAAAAG
ACTAATCAGCACTGTCGCGCCAAATGATAAAGTCTACTGTCTAAGGTAGA
AAGTCTGCTCTTTCTTTAACCCCCTGTTTGTCTGCTTCCCACTTCTCATG
TCGCGTACTCAACATGTAGCAACAAACTTTTCTCGAACTTCTTTCATGCt
cggaaaaaaaacaaaaacaaaacagactGCCACCTTATTGAAGGAAAATT
AGACCTTTCTCGCctctttttttttgagtttcttACTTGAATTAAAAGAC
TGTCATCAGTCAAAACTAGCTTTCCTTCTGAGATAGAAAATGGATTCAAC
ACGGCAAATGAgcccaaaa
Run BLAST on NCBI

transcript from alignment at sc0000376:272243..272661

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021027 ID=TCONS_00021027|Name=TCONS_00021027|organism=Clytia hemisphaerica|type=transcript|length=419bp|location=Sequence derived from alignment at sc0000376:272243..272661 (Clytia hemisphaerica)
ttttgggcTCATTTGCCGTGTTGAATCCATTTTCTATCTCAGAAGGAAAG
CTAGTTTTGACTGATGACAGTCTTTTAATTCAAGTaagaaactcaaaaaa
aaagagGCGAGAAAGGTCTAATTTTCCTTCAATAAGGTGGCagtctgttt
tgtttttgttttttttccgaGCATGAAAGAAGTTCGAGAAAAGTTTGTTG
CTACATGTTGAGTACGCGACATGAGAAGTGGGAAGCAGACAAACAGGGGG
TTAAAGAAAGAGCAGACTTTCTACCTTAGACAGTAGACTTTATCATTTGG
CGCGACAGTGCTGATTAGTCTTTTTGAGAAGAAAGAGAAATAGAGAGAGA
GATGGATACTTTTGGCTTGTGTTTTTCTGATAATTATGCTTTAAGTATCA
GTACGGTTACTTACAGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011798XLOC_011798Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021027-exon-sc0000376-1491911889:272243..272661TCONS_00021027-exon-sc0000376-1491911889:272243..272661Clytia hemisphaericaexon
TCONS_00021027-exon-sc0000376-1510915933:272243..272661TCONS_00021027-exon-sc0000376-1510915933:272243..272661Clytia hemisphaericaexon
TCONS_00021027-exon-sc0000376-1575043694:272243..272661TCONS_00021027-exon-sc0000376-1575043694:272243..272661Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000376supercontigsc0000376:272243..272661 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.329489	0	1.12285	0.227827	0	0.217201	0.203341	0.284728	0.176341	0	0	0	0	0.0959306	0	0	0	0	0	0.163342	0.478036	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021027 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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