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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021069 ID=TCONS_00021069|Name=TCONS_00021069|organism=Clytia hemisphaerica|type=transcript|length=2499bpRun BLAST on NCBI protein sequence of TCONS_00021069-protein >TCONS_00021069-protein ID=TCONS_00021069-protein|Name=TCONS_00021069-protein|organism=Clytia hemisphaerica|type=polypeptide|length=644bp MREIQVLLLFNLCIASYGQVPVGPVVRNRLYKNIGKIHKSYSFTFEMKPTRun BLAST on NCBI transcript from alignment at sc0000377:200838..212331- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021069 ID=TCONS_00021069|Name=TCONS_00021069|organism=Clytia hemisphaerica|type=transcript|length=11494bp|location=Sequence derived from alignment at sc0000377:200838..212331- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000377:200838..212331- >TCONS_00021069 ID=TCONS_00021069|Name=TCONS_00021069|organism=Clytia hemisphaerica|type=CDS|length=21285bp|location=Sequence derived from alignment at sc0000377:200838..212331- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021069 vs. Swiss-Prot (Human)
Match: FA11 (Coagulation factor XI OS=Homo sapiens GN=F11 PE=1 SV=1) HSP 1 Score: 189.889 bits (481), Expect = 4.608e-51 Identity = 111/275 (40.36%), Postives = 154/275 (56.00%), Query Frame = 1
Query: 1159 NPSKVVLGYFNFQSPYPKQVPADSECGVSKVGQSRIVGGQNALPGEWPWQVFYIIRKGTRAFSCGGVLIHKKWVLTAAHCTVG-DGAFVSKLYLGEHERGKVDTGEQTPKVKRIINHEMYRLAPGTNSFDFALLELETEAQITDNVRTICIPKK--RSGTDFDNQICDITGWGTTSESGRGAKILQEASVRVYPQRECLGNY-GSRIGDSMFCAGYRDGGVDSCQGDSGGPLQCKDGNKWVLWGITSWGFGCARPGRAGVYGKVTQVVDWIEEKT 1971
+P+K++ G + D+EC +K+ + RIVGG ++ GEWPWQV T+ CGG +I +W+LTAAHC G + + ++Y G + ++ V+ II H+ Y++A + +D ALL+LET TD+ R IC+P K R+ D C +TGWG + LQ+A + + EC Y G +I M CAGYR+GG D+C+GDSGGPL CK W L GITSWG GCA+ R GVY V + VDWI EKT
Sbjct: 355 SPTKILHGRGGISGYTLRLCKMDNEC-TTKI-KPRIVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAE--SGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTD---CWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 622 The following BLAST results are available for this feature:
BLAST of TCONS_00021069 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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