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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021117 ID=TCONS_00021117|Name=TCONS_00021117|organism=Clytia hemisphaerica|type=transcript|length=590bp
actaattggtcatttaaagtgatagagatgacgcgttctttagaaaaagt
aataagattcttttattacatcttaacgaccaaccaaatcaaataagagc
ttgtaaaaactccagcttatcccttcttgtctacgctactggtaCTGTAT
TGGAATTATAGCAAAGTGAGCTTGGTACAGAGTTTTTCAATCTTTCAACG
TTCAGGTCAACATCAAAGGTCAATATTGTGTTAAAGATGGAGGCTTCGGT
AGCTTTGATGGAAGCAAATTAATCAAGAATACAGCTCCTTCTTTCTCAAC
TGGTTCGGTAGATGGTGTTACGTTGAAATCAACAAAAACTGAGAATGGTG
TCACGACTTGTATATATGAGCGTCCAATCAAACCATCAGATGGAAATGCT
TATTTACATGATTTGAATGATCCTATGGTTATGGTCGTTGCTTTTGGAAA
GTCTGCATCAGGCAACAGTATAAGCTACCATGATCCTGGTAATTACGCTC
AATCCAAAAGAGCATTCAAACTAACCGAAGCGTCAGCGATCGAAGCTACA
TCAGGAAGGACACTGGCAAAAAAGGAAATTGCACATGGTA Run BLAST on NCBI transcript from alignment at sc0000378:47048..52502- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021117 ID=TCONS_00021117|Name=TCONS_00021117|organism=Clytia hemisphaerica|type=transcript|length=5455bp|location=Sequence derived from alignment at sc0000378:47048..52502- (Clytia hemisphaerica)
ACTAATTGGTCATTTAAAGTGATAGAGATGACGCGTTCTTTAGAAAAAGT
AATAAGATTCTTTTATTACATCTTAACGACCAACCAAATCAAATAAGAGC
TTGTAAAAACTCCAGCTTATCCCTTCTTGTCTACGCTACTGGTACTGTAT
TGGAATTATAGCAAAGTGAGCTTGGTACAGAGTTTTTCAATCTTTCAACG
TTCAGGTCAACATCAAAGGTCAATATTGTGTTAAAGATGGAGGCTTCGGT
AGCTTTGATGGAAGCAAATTAATCAAGAATACAGCTCCTTCTTTCTCAAC
TGGTTCGGTAAGTGAAAAAACTGTATATAAGATACAGGGGATTAAGGCGG
GGTCAAAAAGCTTGCAACGTTACAAATCATTTCTAGAAGCTCATTTTGGG
CTCAAATGAAGGTAATCAGTAAGTAGTATAAGATTCAGTCTAGGCAGATG
TTAAGAAATTTTGCGTAATTCGCAAAAAAACTCGATTTTACGTAGATTTT
TGCTATTTTGATGATGTCATAAAAATTTAACTTCTAATAACTTTTGATTT
AAGTATCGAAATTAGTTGAAATTTTGTCCAAAGATGCACATTATTAATGT
TTTCAGAATAGAAAATTTTTTTTATGAAATTTGATGACTTCATCACTTTT
CAGCCGAAAAAAACTGAAATCCTTAAAAAATGCTGACTTCAATATGATTT
TAAAATTATATTGATTATTCTATCAAAAGTTATTGGAATTTTAATATTTT
ATGGCGTCATCAAAAAAGCGCAAAATTGAGGATTTTTGAGAATTACGCAA
AATTTCTAAATCAAAAAAACATCTGCCTAGAGTGAGATTTTTGCGAATTA
CGCAAAATTTCTAAATCAAAAAAACATCTGCCTAGAGTGAATCCTAATCT
ATTTAGTTATACACTTGGTTTGAGCCCAAAATGAGCTTATGAAGTTGATT
TGTAACGTTGCAAGAATTTTGACCACCACAAACCCGCCTTTTATTCCCCT
GGAGGGCGCTTATCACGCTCCATTTTCTGTTTTCTCATGTTCTGCTTTAT
CAATAATGTTTGAAGGGGCTCAGTTTCAATTATGAGGCTTGCAACCCCTC
TACCGAGGGGAGCCTTCAATGGTAACGATTTTCTTTTTGGAAACTATTTT
CTGTACAGCTGTAATTGAAATATTTAAACAAAGATAAAAACGGGCTTTTA
TCAAGAATTATTGTTGTACCAAGTAGGAAATTAGATGAAACTGACTGAGA
CTATGGCGTAATTTTAGGTAGATGGTGTTACGTTGAAATCAACAAAAACT
GAGAATGGTGTCACGACTTGTATGTAAGTAACGGAAACTTTTAATTAATA
TTCTACGTAGATAATCTAGGACTTTTAGAAGTATTTCTAATGGTTTTTAT
TGGATCCACGATAAACCGATTTTACTACCTGGTGCGTCTGCAAAAAGTTT
CTCTCTTTAAAGTTGATTTTCTTGAGGTCTAAAAATTCTAAAAGAACCAT
TCCTTTTTCATTGAATAGAAGAAAGATAAACTCAAATTTTGATGGATCAT
CTATCAAATTTGGTTCATTCGATCAAAAGTTGTGCTCAATAAAGTTCCTT
GGCTCAATTGAATGAAAATGTTACTTTCAGAAAGTGCCCGAAAACGTTAA
AAAAAAGTAATGGTTCTTTTAAGAATTTTTAGACCTCGAGAAAGTTAACT
ATAAAGAGAGAAACCTTTTCGTGGCGCAACCAGTCTAAAGGAAAAGATCA
TTGGAAGGGACGGGATTCGCACCAGGTAGGGTTTGTTGTGACCAGACATC
ACTTCTTAAAGGGACATACAAGTACTGACAAAATTTGTAAACAAACCGTA
TGCAGCGGGATACAAAATCAAAACAAATGTCACATGTCAAAATAAAAAAT
AAAAACAAATATGGTGGATTTTGATTGTTTCAATTGTTTTACAAGTTTGT
TTAAGACACGTGATTTTAATTGTTCTCTTTACTGACACGTGGTTCGCGCA
ATGTTTACATTTTACTACTTTTATGTCCCTTTAATATCACATAAACCATA
ACCTCATGGTGTGAATTGAACTTCCAATCTATTTTAGATATGAGCGTCCA
ATCAAACCATCAGATGGAAATGCTTATTTACATGATTTGAATGATCCTAT
GGTTATGGTCGTTGCTTTTGGAAAGTCTGCATCAGGTCTGTACGAATTAC
GCTCTCAAAATGGATAGCGAACTTGTTTCCATTAGTTTCCAACTAGATGC
TCTCTAATCCGACGTTTTACTATTCGACAGGCTCCCTTATTCGATGAAAT
TTAAAGTTCCCGTCAACAAGAAACTCTCATAAACAACACACCCTTATTCG
ATAAGCTCCATTATTCGATGAAAATCCAATTCCCCCTGAAGATCGAATTA
GAGAGCGTCAACTATATATCTATATATTAATAGCGGTGCTTTGTGTGCAA
TAAAGTAGAAGCCGAAGGCTAGAAGTCAATCTCTTTGGTAGGATTTGAAG
CCAACAAATACTACCAAAGTTGCGCGGCCTTGAGCGGCTCGCCTGGTTTT
TACACAAATGACAGATTGAAACTAAAATTTACCGCTAAATTTCGAGAAAA
ATATCAATCGTAAACAAAGTAGTTGCTAGATTCAATCTGTCGTCAAAATT
ACGGCGCATTTTTTACGGCTTCGCTTTTTCTTGCCTGAGAAAGGTTAGAG
ATTGTACTCTAGCCCTTCGGGCTTTAAACTCAATGTTTGTGAGTCTGTGA
GTCACCACTTTCGTTTTCGCTTTGTCTTTGTTTTAGAATTATGACTTTTA
GTCTCTTGCTTCACAAATTTGTTCTATTGGATTCGCGCCATTTGCAAAAG
ATTTCGCAAGCAATGTTTTGTTCTCGATAAGTTTGTTTTGATTGACAGAT
CGGATAGAGCCTGGTTTAGACTTTATTCAGCCTTTGTTTTGAAATTTAAG
TCCCATCTTCATTTAGTAATTTTAATTTCTGCCCAGCTTTGCGCGATCCT
GTTTTTCTCTTTTCTTTTGTTTGAAATGTTTTCGTATGTATTTAACGATC
GTATTTTATTAATGACATTCGAATTCTTTTCAAAACAAAACAAGTCTATT
TTATAGAAAAGAGATGTAAATCAAAACATAAAAATCAAAAAGTTTGTCGA
AAAATAACAGCATTCAAAGGGCGATAAAAAGCAAGGGAAGAAATTAGTCG
ATCTCTTTCTTCATATAAAAACATTCAAGTGGTTGATACTGTTAAAAACT
GTGTACGTCATTTTACATGTTTAAATTCGAAAAGTTATGACAACGGTTTA
AAAAAAGCAAATTAGAATTGACTTATTAGTTATCTTTTTAAATCTGATAA
AAACAAAGTTGCACTATTCTTTGTGGCTTTCCCGCTTTTTCCTAAAGAAT
TGTCATTTCTACATTGCACTCCTCTTTACCATGATATTTTCTCAAATTGT
CGAAAACTGGACGGCGTATTTAATGCGAGCGAAGCGAGAAAAAGATCTCC
GGGGGAGGACTTTGAAGATATCTTTTCATTCATTTGATCGTTTTTTTAAG
CCAGCTTCAACATCCAAAGGACTTTTTGTGCGTTCAGCTACAGCTTAACC
GGCGTGCGACGCCGGGTAGCGTCTAGTATAATATAATGCAACATAGAAAT
ATGCGAAACGATAAAACGACGCTTCCGGAACAAGTAAAATGCTTGCAACC
ATATTTTTGGACCTACCTCCGGGTACCCCGGTGGAGGTCCTTTAAATTAA
CCCATGTCCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGAGTTGTTCTCGTATTATTCTGCATTTTCAT
ACTATTGTTCTTATTTTTCAATTGTCTTATTACATCAATCTTCAGGTAGG
TCCATTCAGCATGTAGCTTGTTCTACATTAGTTTCTAAACAGATATGATG
CCTGGTGCTCTCAAAGCATCATAACAAACTAAGCCAACATAGACTGGAGT
CGTTTATATTACGTTGAATACAGTAATATTGGTGTTGTATTAGAATACGA
TAATTGTTCCTGGATAATATTAGTTTTAGTCCAACAATACTTTGTGTAAT
TTAAGAAAAGTATATTTTAAGAGCAGAAACTTTCGCGAGGTTACAAAATC
ATGAAATTTCGCGAATTTAACTTTTGGAACGAATTCAACCGATATAACGC
GAATTTTAGAATGTTATTTCATTTTGCAGGCAAAAAAGCGATAAAATGCA
CAAAAACTGAAAACTGAGTAAAAAATAGCAAAAAAAGTGCACTTTTCGCG
GGAGAAACTCGTGTAATTTCTTACTTAGCAGAAATTTTCACGAAAAAGGG
CAAACATCACCAAAATCGCGAAAGTTTCTACCCTATTAAAGTATTCCATG
ATTGTATGTATAATTCTTTTACACAGGCAACAGTATAAGCTACCATGATC
CTGGTAATTACGCTCAATCCAAAAGAGCATTCAAACTAACCGAAGCGTCA
GCGATCGAAGCTACATCAGGAAGGACACTGGCAAAAAAGGAAATTGCACA
TGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021117-exon-sc0000378-1575043694:52196..52502 | TCONS_00021117-exon-sc0000378-1575043694:52196..52502 | Clytia hemisphaerica | exon |
| TCONS_00021117-exon-sc0000378-1575043694:51180..51235 | TCONS_00021117-exon-sc0000378-1575043694:51180..51235 | Clytia hemisphaerica | exon |
| TCONS_00021117-exon-sc0000378-1575043694:50318..50415 | TCONS_00021117-exon-sc0000378-1575043694:50318..50415 | Clytia hemisphaerica | exon |
| TCONS_00021117-exon-sc0000378-1575043694:47048..47176 | TCONS_00021117-exon-sc0000378-1575043694:47048..47176 | Clytia hemisphaerica | exon |
| TCONS_00021117-exon-sc0000378-1510915933:52196..52502 | TCONS_00021117-exon-sc0000378-1510915933:52196..52502 | Clytia hemisphaerica | exon |
| TCONS_00021117-exon-sc0000378-1510915933:51180..51235 | TCONS_00021117-exon-sc0000378-1510915933:51180..51235 | Clytia hemisphaerica | exon |
| TCONS_00021117-exon-sc0000378-1510915933:50318..50415 | TCONS_00021117-exon-sc0000378-1510915933:50318..50415 | Clytia hemisphaerica | exon |
| TCONS_00021117-exon-sc0000378-1510915933:47048..47176 | TCONS_00021117-exon-sc0000378-1510915933:47048..47176 | Clytia hemisphaerica | exon |
| TCONS_00021117-exon-sc0000378-1491911889:52196..52502 | TCONS_00021117-exon-sc0000378-1491911889:52196..52502 | Clytia hemisphaerica | exon |
| TCONS_00021117-exon-sc0000378-1491911889:51180..51235 | TCONS_00021117-exon-sc0000378-1491911889:51180..51235 | Clytia hemisphaerica | exon |
| TCONS_00021117-exon-sc0000378-1491911889:50318..50415 | TCONS_00021117-exon-sc0000378-1491911889:50318..50415 | Clytia hemisphaerica | exon |
| TCONS_00021117-exon-sc0000378-1491911889:47048..47176 | TCONS_00021117-exon-sc0000378-1491911889:47048..47176 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000378 | supercontig | sc0000378:47048..52502 - |
Blast
The following BLAST results are available for this feature:
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