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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021135 ID=TCONS_00021135|Name=TCONS_00021135|organism=Clytia hemisphaerica|type=transcript|length=8363bp protein sequence of TCONS_00021135-protein >TCONS_00021135-protein ID=TCONS_00021135-protein|Name=TCONS_00021135-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2183bp MKLNVKRNVLSYGIYKICLTVVMETEPRFQGVQCGYVKIIPSPLTPIIKGRun BLAST on NCBI transcript from alignment at sc0000378:191079..236703- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021135 ID=TCONS_00021135|Name=TCONS_00021135|organism=Clytia hemisphaerica|type=transcript|length=45625bp|location=Sequence derived from alignment at sc0000378:191079..236703- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000378:191079..236703- >TCONS_00021135 ID=TCONS_00021135|Name=TCONS_00021135|organism=Clytia hemisphaerica|type=CDS|length=157248bp|location=Sequence derived from alignment at sc0000378:191079..236703- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021135 vs. Swiss-Prot (Human)
Match: PK1L2 (Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=4) HSP 1 Score: 212.231 bits (539), Expect = 1.581e-54 Identity = 123/360 (34.17%), Postives = 202/360 (56.11%), Query Frame = 3
Query: 4287 LNYSIEITKAKCLFWDPVNETWGSNGCVVGIETTPSTTQCLCNHLTNFGGDVMVAPNPIDMDQVFAGLKNLGDNLGVLMVIITLWLLYVILLVWAKRKDRKDMVDEQMIVVDCTKSEPIEQ-TVLLNIVTGAGFGCGTTANVFCILSGEKGKTQIIPLRYEGRKMFQSRSTVAIKVHLPTNIGNLTSIRVFHDNSGTSPSWFLRSILAIDLQNHQNYNFVCDKWLAVESKDGQIERNLTLADEKDLKQFHLVFASTVSKSLVDGHIWFSVFMRPKHSPFTRVRRLSACLALIFLVMLTNAMFFGAGDNPGSRKVVWLGNFKINFTGIIVGIQSAFXXXXXXXXXXXXFRRLGPKKEKNQN 5363
L I + C+FWD V ETW +GC VG T+P T CLCNHLT FG +V N I++ Q DN V+ + L ++YV++++WA+RKD +D ++ V++ ++P Q L+ + TG G T++ V L G G+ + L +F+ + A + +G L S+R++HDNSG PSW++ +L DL + + F+C+ WL++ D +++ +A E+D KQF +F S DGHIW+S+F R S FTRV+R+S C +L+ MLT+ MF+G +P +K+ LG + + +++G++S+ ++ P +++IV+IF+ P+ K QN
Sbjct: 1271 LTVGITTFLSHCVFWDEVQETWDDSGCQVGPRTSPYQTHCLCNHLTFFGSTFLVMSNAINIHQTAELFATFEDNPVVVTTVGCLCVVYVLVVIWARRKDAQDQAKVKVTVLE--DNDPFAQYHYLVTVYTGHRRGAATSSKVTVTLYGLDGEREPHHLADPDTPVFERGAVDAFLLSTLFPLGELRSLRLWHDNSGDRPSWYVSRVLVYDLVMDRKWYFLCNSWLSINVGDCVLDKVFPVATEQDRKQFSHLFFMKTSAGFQDGHIWYSIFSRCARSSFTRVQRVSCCFSLLLCTMLTSIMFWGVPKDPAEQKMD-LGKIEFTWQEVMIGLESSILMFPINLLIVQIFQNTRPRVAKEQN 1627 HSP 2 Score: 139.043 bits (349), Expect = 2.602e-32 Identity = 94/325 (28.92%), Postives = 162/325 (49.85%), Query Frame = 3
Query: 6651 DGSVVSCFDRWEHFSASELRGFPVVGRTNTYPGSGYVANLGYNEETSWTVLADLHIHNWLDKQTRAIFAEFTVYNGNVNLFMTAFLYLETLPTGGAFPWSDFKVFNGYRYSAKDGLQS--MWAEMIFICFIIYFGVIEIRKMLKLKFNYFKSFFNLIEATLMPLYLVMFALILIRWLTTSANIKTFKQNPKDFVSFQYAAAADEALMSVIGIVCXXXXXXXXXXXXXAKLFFVIGQVIKSFTVPLLYFMVPFTMYFLLFCWSAHLAFGNQLEEFQTIPRTITTQFLHLLGATDFESITDARPVVGSLYFLAYSGFMLFVAFNMFM 7619
+G + W++ S + +G+P+ G+ Y G GYV LG + + +L L + WLD TRA+F E TVYN NVNLF L LET G F + + Y ++ DG + AE+I+ F++Y+ V++ ++M K + YF S +NL+E ++ A+ + R + +++ + + ++ +SF AAAD AL +I + L +K LL+ +I ++ + FM+ L + +++L FG +L ++T+ T LG ++E + D PV+GS + FM FV N+F+
Sbjct: 2069 EGWNATTLSEWQYQSQDQRQGYPIWGKLTVYRGGGYVVPLGTDRQKHVKILRYLFDNTWLDALTRAVFVESTVYNANVNLFCIVTLTLETSALGTFFTHAALQSLRLYPFT--DGWHPFVVAAELIYFLFLLYYMVVQGKRMSKETWGYFCSKWNLLELAIILASWSALAVFVKRAVLAERDLQRCRNHREEGISFSETAAADAALGYIIAFLVLLSTVKLWHLLRLNPKMNMITAALRRAWGDISGFMIVILTMLLAYSIASNLIFGWKLRSYKTLFDAAETMVSLQLGIFNYEEVLDYSPVLGSFLIGSCIVFMTFVVLNLFI 2391 HSP 3 Score: 85.5001 bits (210), Expect = 4.764e-16 Identity = 49/162 (30.25%), Postives = 77/162 (47.53%), Query Frame = 3
Query: 5901 PSDSELEKSRKQKIREKMTGIVIKDIATYLIFLLIVAKLAYMEKDFHTYIYRQDMVNMLKEATYTFGPKFESISNHGYFYSWMRDTLIPGVFAGPWYNDDLVKHQGFIDNHESFLVSIPRIRQVRVQENSCPLPSIFDGVINHCEATYKGSLEDQVDYGIAW 6386
P + +EK + ++E+ +I++I YL FL ++ +AY ++D Y ++ + ++F F + F+ W TL+ ++ P GFI + S LV +IRQVRVQE+SCPL +N C A Y ED DYG W
Sbjct: 1926 PLTAAIEKMKTTHLKEQKAFALIREILAYLGFLWMLLLVAYGQRDPSAY-------HLNRHLQHSFTRGFSGVLGFREFFKWANTTLVSNLYGHP---------PGFITDGNSKLVGSAQIRQVRVQESSCPLAQQPQAYLNGCRAPYSLDAEDMADYGEGW 2071 The following BLAST results are available for this feature:
BLAST of TCONS_00021135 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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