TCONS_00021157 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021157
Unique NameTCONS_00021157
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1057

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021157 ID=TCONS_00021157|Name=TCONS_00021157|organism=Clytia hemisphaerica|type=transcript|length=1057bp
GTCTCTGTCAACACAACGCTATCCAAAAATGCAGATATCATATCCGGGGT
GCCTCAGGGTTCTGTGCTAGGTCCCCTTCTGTTTCTTGTAATGATACAGG
AAATTGATGAAGATATATACAACGCTGTCCTGTCTTCATTTGCGGATGAC
ACCAGGCTGATGAAAGCACTGGCCAGCCAAAATGAAGTCCAACTTCTCCA
AAACGATCTCAACTCAGTATATAAATGGTCAGAGATCAATAATATGCAAC
TGAATGGACTCAAATTCGAACATATGcaatatggaaaaaatgaagagcTG
AAACCCTATTCAGTTTATTATTCTGATACTCGAGATCAAATTGAAACAAA
AAGCCAAGTCAAAGACCTTGGAGTTACTCTAGATGTAGATATCGTAAAAG
gtgccgtggtatagtggtagtcgaccttgaCTTCTGTACAggcggccagg
gttcgattcccactcacggcagttcacttggcaagtgaacgttccttcac
cggtcaacccatgccatgtgaggggaattgggtagtcagttcaaggtgct
gacgggactctcattagtaagcgtctatagttgcgagaataggcctctaa
agcctcctgcaactcaaccaaatagagaGATGAGCTACAATCAACACATC
AAAAACCAAATCAACAAAGTGAAATCTATCAGCTCTTGGATATTTCGTAC
TTTCAAGACAAGGGACAAAGATGTCATGTTAACCCTTTGGAAGTCACTTG
CCATTCCACACCTTGACTACTGCTCTCAACTATGGTCTCCATCAAAGAGA
TGCCTCATTCAAGAACTAGAGCTGCTACAAAAATCACTCCTGAACGGTAT
CCCCTCGTTGAGCCACTTAAACTATTGGGAAAAATTGAACCAACTGAAAA
TCTACAGTCTTGAAAGAAGAAGAGACAGGTACAGAATCATTTACACGTGG
TGCATACTAGAAGACATTGCCCCCAATTTCAACTATAATGACGAGGCAGA
CGGCGTGCATTCTTACACAAATCAGAGACTGGGTAGAAAATGCAATTTGA
AAGCTAT
Run BLAST on NCBI

protein sequence of TCONS_00021157-protein

>TCONS_00021157-protein ID=TCONS_00021157-protein|Name=TCONS_00021157-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
MSYNQHIKNQINKVKSISSWIFRTFKTRDKDVMLTLWKSLAIPHLDYCSQ
LWSPSKRCLIQELELLQKSLLNGIPSLSHLNYWEKLNQLKIYSLERRRDR
YRIIYTWCILEDIAPNFNYNDEADGVHSYTNQRLGRKCNLKA
Run BLAST on NCBI

transcript from alignment at sc0000378:297307..298363

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021157 ID=TCONS_00021157|Name=TCONS_00021157|organism=Clytia hemisphaerica|type=transcript|length=1057bp|location=Sequence derived from alignment at sc0000378:297307..298363 (Clytia hemisphaerica)
ATAGCTTTCAAATTGCATTTTCTACCCAGTCTCTGATTTGTGTAAGAATG
CACGCCGTCTGCCTCGTCATTATAGTTGAAATTGGGGGCAATGTCTTCTA
GTATGCACCACGTGTAAATGATTCTGTACCTGTCTCTTCTTCTTTCAAGA
CTGTAGATTTTCAGTTGGTTCAATTTTTCCCAATAGTTTAAGTGGCTCAA
CGAGGGGATACCGTTCAGGAGTGATTTTTGTAGCAGCTCTAGTTCTTGAA
TGAGGCATCTCTTTGATGGAGACCATAGTTGAGAGCAGTAGTCAAGGTGT
GGAATGGCAAGTGACTTCCAAAGGGTTAACATGACATCTTTGTCCCTTGT
CTTGAAAGTACGAAATATCCAAGAGCTGATAGATTTCACTTTGTTGATTT
GGTTTTTGATGTGTTGATTGTAGCTCATCtctctatttggttgagttgca
ggaggctttagaggcctattctcgcaactatagacgcttactaatgagag
tcccgtcagcaccttgaactgactacccaattcccctcacatggcatggg
ttgaccggtgaaggaacgttcacttgccaagtgaactgccgtgagtggga
atcgaaccctggccgccTGTACAGAAGtcaaggtcgactaccactatacc
acggcacCTTTTACGATATCTACATCTAGAGTAACTCCAAGGTCTTTGAC
TTGGCTTTTTGTTTCAATTTGATCTCGAGTATCAGAATAATAAACTGAAT
AGGGTTTCAgctcttcattttttccatattgCATATGTTCGAATTTGAGT
CCATTCAGTTGCATATTATTGATCTCTGACCATTTATATACTGAGTTGAG
ATCGTTTTGGAGAAGTTGGACTTCATTTTGGCTGGCCAGTGCTTTCATCA
GCCTGGTGTCATCCGCAAATGAAGACAGGACAGCGTTGTATATATCTTCA
TCAATTTCCTGTATCATTACAAGAAACAGAAGGGGACCTAGCACAGAACC
CTGAGGCACCCCGGATATGATATCTGCATTTTTGGATAGCGTTGTGTTGA
CAGAGAC

Coding sequence (CDS) from alignment at sc0000378:297307..298363

>TCONS_00021157 ID=TCONS_00021157|Name=TCONS_00021157|organism=Clytia hemisphaerica|type=CDS|length=426bp|location=Sequence derived from alignment at sc0000378:297307..298363 (Clytia hemisphaerica)
AGCTTTCAAATTGCATTTTCTACCCAGTCTCTGATTTGTGTAAGAATGCA
CGCCGTCTGCCTCGTCATTATAGTTGAAATTGGGGGCAATGTCTTCTAGT
ATGCACCACGTGTAAATGATTCTGTACCTGTCTCTTCTTCTTTCAAGACT
GTAGATTTTCAGTTGGTTCAATTTTTCCCAATAGTTTAAGTGGCTCAACG
AGGGGATACCGTTCAGGAGTGATTTTTGTAGCAGCTCTAGTTCTTGAATG
AGGCATCTCTTTGATGGAGACCATAGTTGAGAGCAGTAGTCAAGGTGTGG
AATGGCAAGTGACTTCCAAAGGGTTAACATGACATCTTTGTCCCTTGTCT
TGAAAGTACGAAATATCCAAGAGCTGATAGATTTCACTTTGTTGATTTGG
TTTTTGATGTGTTGATTGTAGCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011857XLOC_011857Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021157-proteinTCONS_00021157-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021157-exon-sc0000378-1491911889:297307..298363TCONS_00021157-exon-sc0000378-1491911889:297307..298363Clytia hemisphaericaexon
TCONS_00021157-exon-sc0000378-1510915933:297307..298363TCONS_00021157-exon-sc0000378-1510915933:297307..298363Clytia hemisphaericaexon
TCONS_00021157-exon-sc0000378-1575043694:297307..298363TCONS_00021157-exon-sc0000378-1575043694:297307..298363Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000378supercontigsc0000378:297307..298363 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.61899	5.69442	11.0061	10.5462	4.37927	2.55647	2.83933	4.36871	3.20662	4.26808	3.55819	4.19544	4.86775	3.59968	2.9585	2.66371	4.43275	4.71891	7.52877	9.6966	5.54212	5.20431	4.29999	3.94855	2.4647	2.09753	7.96542	9.15471	3.39897	2.8475
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021157 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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