TCONS_00021272 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021272
Unique NameTCONS_00021272
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1673

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021272 ID=TCONS_00021272|Name=TCONS_00021272|organism=Clytia hemisphaerica|type=transcript|length=1673bp
GAATTAATTAAAAGTCAATGATGTCACTCTGCATGATATAAGATGATGCT
GTTTATTAAATTGCTTAAGTATTATAGTGACGAGATATAGCACCAAAGAG
AGACGGAGTGCAAAATCGTCAACGAATACTTTTGACAACAAATAAACATG
TCTCGTGATTTAAACTGACAGTGCAATCAataagaaattttcaaagaGGT
TTCAAACAAGCTTAAACAAGAAAGGTTCGAGCAAGGAAGTAAAAAGCTTG
TGTTTTTATTGCCCTCAATTTACAAGTGAGATTTAATCTTTCGACGAATA
AGATGTTGTTGGAAGCTCTCTTCATTACGACAATTGTCAGTGCTCAGGGT
GGTGTATTCGTTCGAAAGGAGGCTGACCTCTGGGTATATCGTGGATATGG
TCCAGCATGCTCTGAGGGAATCAACAAAATACGAGCAGCTTTTGGTGACG
AAAACCTCACATGGGATGATGAACTGTCATTAGAAGCTGAGAACTGGGCA
CTAACGCAAGCCATCAATTCTCCTAATGATGATTCTAAACATGCAGATAC
AAAGAACGGTGAAAATACATTTCAAGCTTGGTATTCCACCGTAGAACAAT
TTATTGACGCCATCACTTGTGACTATCCTTTATGGGCGTGGTACCAGTAA
CGTGACCCAAAGAAGCCATCAAAAGGCTTGATCAATCAACTAGTTGGTGA
AAAAGTGAAGAAATATGGGATGGGCATGGTCGTCAACACTGCAAAGAAAG
TTGTGTATTTTGTCGGCCATTTTGATTACAACATGCCAATCGATCGAAAG
ATTTGGGATGACTATCTCAGCAAAAAGGAAAAATGGGTTATTCCGAGCAG
AGATCGTTTGAAGAGTAAAAAAGGTTCACTGACTCCGTCTTGTCGTGATT
ATAAACGAAACATTATACCGTGCAAATCTTCCTTCAGAAGAACACGATAC
CACCAGGATGAGGAGAGGCATGTCATTGTTATTGAACCAAAAAGTTTCCC
AATCGTTCTCTAAATCATACACCATAGCTCAGTATGTCAACGTTATTTTT
GGTAtcgagtgcaatttttctcatctttgctgatttTGACAGTACACTTT
GGCAAGCTTGAAAAATATACCCATAAAGATAGCGTTACCTTtatctttca
aaatttaataatgaaaattattaGCTCGAAAATTAGTAtgtataattttt
ctttctaaaattattttgtaaatttattgTCTAGATTTTAGTTTTAGAGT
GAAAGTAAAACTAACGAAATTATCTCCTGATTTTTATTGGAGACTACAGT
ATCTATGAAATTTTCTCTAAGTGATTATTTTAATCCCTCGCGgataattt
ttggaaatgttttTTACTACTGTCTTAAAATAGGTTTAGAATGGTGATAA
AGATAATAAAAAGTCATCAAAAGGTCTTAGCTTCGATACGTCAATCGGTT
TTGGTTGTTTACCCAACGAACAGGTCATTGTTGATTTAACGTAAGGTTTA
GGAAgctgacaaaaataaaaagcaagTCCGACTTTTTTTGTCTTTCAGAG
TGTTATTATCAAGTTACGTTTACAAAAAAGTCACAACGGTAGAAAACTTA
ATCATTTGAGCTTATTGATTTTGTAAACAAAGTCATAGATTCATTGTcaa
ttcaaatgaaaatatcatCGCGA
Run BLAST on NCBI

protein sequence of TCONS_00021272-protein

>TCONS_00021272-protein ID=TCONS_00021272-protein|Name=TCONS_00021272-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
MLLEALFITTIVSAQGGVFVRKEADLWVYRGYGPACSEGINKIRAAFGDE
NLTWDDELSLEAENWALTQAINSPNDDSKHADTKNGENTFQAWYSTVEQF
IDAITCDYPLWAWYQ
Run BLAST on NCBI

transcript from alignment at sc0000380:184711..189321-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021272 ID=TCONS_00021272|Name=TCONS_00021272|organism=Clytia hemisphaerica|type=transcript|length=4611bp|location=Sequence derived from alignment at sc0000380:184711..189321- (Clytia hemisphaerica)
GAATTAATTAAAAGTCAATGATGTCACTCTGCATGATATAAGATGATGCT
GTTTATTAAATTGCTTAAGTATTATAGTGACGAGATATAGCACCAAAGAG
AGACGGAGTGCAAAATCGTCAACGAATACTTTTGACAACAAATAAACATG
TCTCGTGATTTAAACTGACAGTGCAATCAATAAGAAATTTTCAAAGAGGT
TTCAAACAAGCTTAAACAAGAAAGGTTCGAGCAAGGAAGTAAAAAGCTTG
TGTTTTTATTGCCCTCAATTTACAAGTGAGATTTAATCTTTCGACGAATA
AGATGTTGTTGGAAGCTCTCTTCATTACGACAAGTAAGATGTTGGTTCTC
TTACTACTTTGCAACTATATGTCCTAGTACTATCATTATTCAACTTTTGT
TTTTTTTCTTCTACACTGCATTGTCCAACCTCGTCCCCGTGTATCCCAGG
CTTTATTTACATTACTGATTGACGCCAGAGAATTATATCATGAACATATA
AACGACTGGACATCTACCTTTTATTGTCTCTTTGAAGCGAGCTTCGTTGC
CGCCTGTATTTCAAAATTGGTATGAAAAATCCGACAATATTCCGTCATAA
TTTTATTTCTTTGAATTATTTAGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGTTTCATTTTATGCTTTTAACGAGGCGGCAACG
AAGCTAGCAGCCCTTTCTACAAAAAGACAAAGGAGATGGATGTCCAGTCG
TTTATATGTTCATGATTATATCTAGCGCAGTAACACCATCAAAAAGCTGA
TAAATACGCAGGGAACGACGAGGTTGTGCATTGTCCTCATATATAAATTA
CGGACTTTCCTAATAAGATGTTACATTTTCATTGTGATCTAGAACAGCCC
CAATATCTCTCAGCAATATAGACTGGTTTTCTAGCTACATTTTTTCACAT
GTTTGTGTATATGTGTTGAACGAATTCTTTCAATTTCAATGTATGTACCT
CAAAAAACTAAACATGGCAAATAAAAAATTCCCAAACATACTAAACTCCA
ACCGTGATTTATCTGTTTCTTTCAATGTATTTTAGTTGTCAGTGCTCAGG
GTGGTGTATTCGTTCGAAAGGAGGCTGACCTCTGGGTATATCGTGGATAT
GGTCCAGCATGCTCTGAGGGAATCAACAAAATACGAGCAGCTTTTGGTGA
CGAAAACCTCACATGGGATGATGAACTGTCATTAGAAGCTGAGAACTGGG
CACTAACGCAAGCCATCAATTCTCCTAATGATGATTCTAAACATGCAGAT
ACAAAGAACGGTGAAAATACATTTCAAGCTTGGTATTCCACCGTAGAACA
ATTTATTGACGCCATCACTTGTGACTATCCTTTATGGGCGTGGTACCAGT
AAGTCAACACTCTACCCTACACTTTTACCTGACCCTTAAGTCACTGATAA
TAAATCGATCCAAAGAATTTTCTCTAAAGTCTGTCCAGATATAATTGGCA
GTGGAAACAAGAACGCCTGTAACTTTTGATAGTCAAATATAATTATGGAA
TTTTTTTTTGCTTGTTTCAGAGAATCAAAAGCGCTATATTTGAATGTATT
TTTGGTTGAAAAATTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNGAAAAATTCGCGATTTTTAGCGGTTAAA
TTTGCGATTGCAAAAATTTAGCTTTTTTTCTACTTATGCTATAACGTTCA
TTTTTACACCAGTAGTAGTTCAACCTTAGGTTAAGAAGTTTTTTAAATTT
CAAGGCGAACAAAAAAGTCCTTCGGAAGATACGGGACCCGAAATACCCCT
TGGTAGCACTTTTCTGTGAAATATCAAATCTCCAACTTATTACTGGCAAA
CTCGAACGGAACACTAAGTGGTGCCAGTGGCTCTGGGTACAAGATCTCCC
TTGCTGGTTGAAGATACTAAATGAGTCTTCGGAACATCCAGCATCCAGGG
ATGTCTTGTGCAAAGAATCTGTATGGTAGTTTAAATCCTTGGCTAGAAAT
TGGGTTAATTTCCTGTAGCGATTTAACGAGACAGTAAATGTCCATACAAC
TTTATTAAAGTTAATGACAGATTCGATGGTGGAAATAATTTTTATTCACA
ATTTAGGGAGCGTGACCCAAAGAAGCCATCAAAAGGCTTGATCAATCAAC
TAGTTGGTGAAAAAGTGAAGAAATATGGGATGGGCATGGTCGTCAACACT
GCAAAGAAAGTTGTGTATTTTGTCGGCCATTTTGATTACAACATGCCAAT
CGATCGAAAGATTTGGGATGACTATCTCAGCAAAAAGGAAAAATGGGGTA
AAAATCATTTTACAAATATTACGCGTTTGATTTATAGGAACGTTTATAAT
TTTTGAAACCTTCGGATGTTCAGAATGTTCGAATTTTCAAAGTATGGCAC
TCCCTATATTCAGTATACCTAAACGTTAGATTTGTGGGGCTCGATAAGCT
GAACATATTTATGCATCATTGAAAAGGAGTTTTTCAAGAGTATTTTTAAA
CCTTGTATCCTACCTTTTGTATTCTAGTTATTCCGAGCAGAGATCGTTTG
AAGAGTAAAAAAGGTTCACTGACTCCGTCTTGTCGTGATTATAAACGAAA
CATTATACCGTGCAAATCTTCCTTCAGAAGAACACGATACCACCAGGATG
AGGAGAGGTAGGAATAACCTATTCTCACACCCCTGTCTCACAGTTATCCA
GTCAAAACCTTTTGGCCAGGAAGAAAAAGAAAATTAAGAAATATTGCATT
TCGATCAACTCAGGGGGAGAGAACTTCAGTGTGTCTCATTATTCTTTTAT
AGTAGAATTGCAATTGAAATTCTTAACTTTGCAAGTTCTAAGCCTTAAAA
TGTTCTTGTTTTTAATAATTTAGCCATCAAAGCCTTGTTCTTATATAGAT
TGTTCTTATAAGAAACTTGTGTTGATGAAATTCACCTTTCTATCTTCATT
TTTAGGCATGTCATTGTTATTGAACCAAAAAGTTTCCCAATCGTTCTCTA
AATCATACACCATAGCTCAGTATGTCAACGTTATTTTTGGTATCGAGTGC
AATTTTTCTCATCTTTGCTGATTTTGACAGTACACTTTGGCAAGCTTGAA
AAATATACCCATAAAGATAGCGTTACCTTTATCTTTCAAAATTTAATAAT
GAAAATTATTAGCTCGAAAATTAGTATGTATAATTTTTCTTTCTAAAATT
ATTTTGTAAATTTATTGTCTAGATTTTAGTTTTAGAGTGAAAGTAAAACT
AACGAAATTATCTCCTGATTTTTATTGGAGACTACAGTATCTATGAAATT
TTCTCTAAGTGATTATTTTAATCCCTCGCGGATAATTTTTGGAAATGTTT
TTTACTACTGTCTTAAAATAGGTTTAGAATGGTGATAAAGATAATAAAAA
GTCATCAAAAGGTCTTAGCTTCGATACGTCAATCGGTTTTGGTTGTTTAC
CCAACGAACAGGTCATTGTTGATTTAACGTAAGGTTTAGGAAGCTGACAA
AAATAAAAAGCAAGTCCGACTTTTTTTGTCTTTCAGAGTGTTATTATCAA
GTTACGTTTACAAAAAAGTCACAACGGTAGAAAACTTAATCATTTGAGCT
TATTGATTTTGTAAACAAAGTCATAGATTCATTGTCAATTCAAATGAAAA
TATCATCGCGA

Coding sequence (CDS) from alignment at sc0000380:184711..189321-

>TCONS_00021272 ID=TCONS_00021272|Name=TCONS_00021272|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at sc0000380:184711..189321- (Clytia hemisphaerica)
TTGTCAGTGCTCAGGGTGGTGTATTCGTTCGAAAGGAGGCTGACCTCTGG
GTATATCGTGGATATGGTCCAGCATGCTCTGAGGGAATCAACAAAATACG
AGCAGCTTTTGGTGACGAAAACCTCACATGGGATGATGAACTGTCATTAG
AAGCTGAGAACTGGGCACTAACGCAAGCCATCAATTCTCCTAATGATGAT
TCTAAACATGCAGATACAAAGAACGGTGAAAATACATTTCAAGCTTGGTA
TTCCACCGTAGAACAATTTATTGACGCCATCACTTGTGACTATCCTTTAT
GGGCGTGGTACCAGTAAATGTTGTTGGAAGCTCTCTTCATTACGACAATT
GTCAGTGCTCAGGGTGGTGTATTCGTTCGAAAGGAGGCTGACCTCTGGGT
ATATCGTGGATATGGTCCAGCATGCTCTGAGGGAATCAACAAAATACGAG
CAGCTTTTGGTGACGAAAACCTCACATGGGATGATGAACTGTCATTAGAA
GCTGAGAACTGGGCACTAACGCAAGCCATCAATTCTCCTAATGATGATTC
TAAACATGCAGATACAAAGAACGGTGAAAATACATTTCAAGCTTGGTATT
CCACCGTAGAACAATTTATTGACGCCATCACTTGTGACTATCCTTTATGG
GCGTGGTACCAGTAAATGTTGTTGGAAGCTCTCTTCATTACGACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011904XLOC_011904Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021272-proteinTCONS_00021272-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021272-exon-sc0000380-1575043694:188989..189321TCONS_00021272-exon-sc0000380-1575043694:188989..189321Clytia hemisphaericaexon
TCONS_00021272-exon-sc0000380-1575043694:187070..187386TCONS_00021272-exon-sc0000380-1575043694:187070..187386Clytia hemisphaericaexon
TCONS_00021272-exon-sc0000380-1575043694:186075..186261TCONS_00021272-exon-sc0000380-1575043694:186075..186261Clytia hemisphaericaexon
TCONS_00021272-exon-sc0000380-1575043694:185715..185844TCONS_00021272-exon-sc0000380-1575043694:185715..185844Clytia hemisphaericaexon
TCONS_00021272-exon-sc0000380-1575043694:184711..185416TCONS_00021272-exon-sc0000380-1575043694:184711..185416Clytia hemisphaericaexon
TCONS_00021272-exon-sc0000380-1510915933:188989..189321TCONS_00021272-exon-sc0000380-1510915933:188989..189321Clytia hemisphaericaexon
TCONS_00021272-exon-sc0000380-1510915933:187070..187386TCONS_00021272-exon-sc0000380-1510915933:187070..187386Clytia hemisphaericaexon
TCONS_00021272-exon-sc0000380-1510915933:186075..186261TCONS_00021272-exon-sc0000380-1510915933:186075..186261Clytia hemisphaericaexon
TCONS_00021272-exon-sc0000380-1510915933:185715..185844TCONS_00021272-exon-sc0000380-1510915933:185715..185844Clytia hemisphaericaexon
TCONS_00021272-exon-sc0000380-1510915933:184711..185416TCONS_00021272-exon-sc0000380-1510915933:184711..185416Clytia hemisphaericaexon
TCONS_00021272-exon-sc0000380-1491911889:188989..189321TCONS_00021272-exon-sc0000380-1491911889:188989..189321Clytia hemisphaericaexon
TCONS_00021272-exon-sc0000380-1491911889:187070..187386TCONS_00021272-exon-sc0000380-1491911889:187070..187386Clytia hemisphaericaexon
TCONS_00021272-exon-sc0000380-1491911889:186075..186261TCONS_00021272-exon-sc0000380-1491911889:186075..186261Clytia hemisphaericaexon
TCONS_00021272-exon-sc0000380-1491911889:185715..185844TCONS_00021272-exon-sc0000380-1491911889:185715..185844Clytia hemisphaericaexon
TCONS_00021272-exon-sc0000380-1491911889:184711..185416TCONS_00021272-exon-sc0000380-1491911889:184711..185416Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000380supercontigsc0000380:184711..189321 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.315035	0.212683	0.109753	0.214753	0.294121	0.335716	2.83519	3.12095	20.809	13.4568	51.9269	17.2691	34.877	40.304	65.3763	57.7544	24.741	35.1107	88.6425	80.5735	21.3684	19.6798	24.5069	26.5747	22.2197	20.0395	13.6238	10.6743	106.594	96.4895
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014044CAP_domain
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021272 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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