|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021337 ID=TCONS_00021337|Name=TCONS_00021337|organism=Clytia hemisphaerica|type=transcript|length=1921bp
agAGAATaatagaagaaaagaaaaatgaaaagagcTGCTTCAACATCAAT
TGATGACGAAGATGAGAGATATTATTGCACACCATCAACTCTCACTGAAC
AACACTTCAAGATTCTAAAATCACTCTTCCAAAATGCAAACACAAATATG
AGTTCATTGATAGAAATTTACCGTAAATTGAGTGAAAAATTGGATGAAAG
TGACTTTCCGAAATTGTACAAAGTACATGGTATAGTTCAACCTATATATA
AATGGTTAGATTTGCTCTATTTGAGAGAATTTAAGCACCAATGGGCGGGC
AATCCAGATCCTGAGAAAATCAACTTCAAGTTTTTATTCAAGAGGACAGA
TAAAGagattttaccattagaaagtcACAAACAATACATTTATGAAGCAC
ACAGAGGTATAAAGACATTCAAAGGAATGTACAGCCGTGACAAACATCGT
AATTATAGGCATAATGATGCTAAAACTACAAAGAAACTGTTAAGGACGAA
ATTTACTGTTGGAAAGTATGAGTTTGGTATACCAGAGGACTCTATAATGA
ACGAGGTGTCGCTGTGTGAACAGTGCAAGATATTCCAACGTGATAAGATA
CCTGTCATCAAGAAGCCTTGGATACCTCGTAAACATGTTGAACCGCCCCC
AAAATCAACAAATGGTTCTGCAGATAATGGTGCAGTGTTGAGATACCCGA
TCACTCAAGCATGGGAATGGTCTAATGAAGAAAGTATCTGGTACAATAGA
TCTGGTGGGAATTCTATGATTTTTAATTAAACTGTTTTCACCACTTTTTC
TCTTTACAGCAAGAAGATAGAAAAGAGTCAGGTTGTGAAGTTGATATGTC
ATTTcgtaatcagatggtttgagattcTTGGCTTGTGAAGTCATTTCATG
GTCCTGAGTAAAACCTCCAATTTTTTGGTCCAAGTGTTTTCCAAGGTTGA
AATACAATATAAAACGGTGCTTACCATATGttaggattttttttaataCT
TGCAAAAGTGCATAACTTGTAACTTGAATATCTGGACTTCGAAGAGATTT
TAGTAAAACGATTTGGATTtgggtttttttttctcatttcattaaaataa
atttacagccCAAAGATTTCATGTTCATACATACATACTGTTTCGTGTTT
TATAGGTTTGAAAGCAGAGAATGATCGTCTTGCAAAGATTAGAAACATCA
TACAGGAAATTGGCGTTGACTTGCCTGCTACACTTACTGGCAACCCTTCT
GCTCAAAAACGTGTTTTGACAAAAATAGTTTGTGCAAAGATGATGATTAA
CGATAAAATGGAACAACTGCAACCAGAACAATacaatatgaatgttcaaa
ctctCTGCGAAGGAATGGACACCTTTTTTGAAGAATCATTGAAACATTGC
AATTATAAGACGTTCATGTACGATATCAACAGTCTACTTTTCAATAAAGT
CTCTCTCACCGATGATAGACAcaAACTTTGGGATAATCTATGGGAGCAAT
TCGAATCGAGGTTGCAAGACATTTTGAAGTTGGATCAAACAATACCTCGA
AAACAAATCGATGGGTTCACTATTGACTTTGATAAACctgtacaattaac
aaaacaagaTCTTGATGGATTTGAAATAGGCGTAAAAGATCATGAAAAAG
AGGCTGGAAACTCATCACTCGTgtcttcaaattaaagaaaGTAGATTGAA
AAGTGCTTTGATTGTTGCCATCATTTCATTGTACTATTATGATAGAGTTA
CAGGAGCCAATAGGATGTTTGTTATTGTGTAcagtattttcagtttttta
gtatCTTTTTTATAGGAATTATTTTGTAGAAGTCACATGTTTTCCTTTTT
ATTATCGATTTGTTCATTTACATCACAAGTTATATATGTATACTTAAATA
CAAAATCAACACAAGTCAACT Run BLAST on NCBI transcript from alignment at sc0000385:197005..200588+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021337 ID=TCONS_00021337|Name=TCONS_00021337|organism=Clytia hemisphaerica|type=transcript|length=3584bp|location=Sequence derived from alignment at sc0000385:197005..200588+ (Clytia hemisphaerica)
agAGAATaatagaagaaaagaaaaatgaaaagagcTGCTTCAACATCAAT
TGATGACGAAGATGAGAGATATTATTGCACACCATCAACTCTCACTGAAC
AACACTTCAAGATTCTAAAATCACTCTTCCAAAATGCAAACACAAATATG
AGTTCATTGATAGAAATTTACCGTAAATTGAGTGAAAAATTGGATGAAAG
TGACTTTCCGAAATTGTACAAAGTACATGGTATAGTTCAACCTATATATA
AATGGTTAGATTTGCTCTATTTGAGAGAATTTAAGCACCAATGGGCGGGC
AATCCAGATCCTGAGAAAATCAACTTCAAGTTTTTATTCAAGAGGACAGA
TAAAGagattttaccattagaaagtcACAAACAATACATTTATGAAGCAC
ACAGAGGTATAAAGACATTCAAAGGAATGTACAGCCGTGACAAACATCGT
AATTATAGGCATAATGATGCTAAAACTACAAAGAAACTGgtgagatttta
atttttttaagtttctcTGGACAAATCACTTAATTTCTCAACGCCATTAT
TTGTAGCAAATGGGGTTTATGAGCTTCTATGAAAAAGCAGCACATAGCCT
GTTGTAATAGATACGAGAGAGAGAAATTTGCTCAATGCCCAAGGCCATTG
AAAATGCAAAATAATAAATTTATAGGTAGTTTATAATTGGGTTTTTATTA
GTCTTCTGTTTCTCTCCATTCAGTTAAGGACGAAATTTACTGTTGGAAAG
TATGAGTTTGGTATACCAGAGGACTCTATAATGAACGAGGTGTCGCTGTG
TGAACAGTGCAAGATATTCCAACGTGATAAGATACCTGTCATCAAGAAGC
CTTGGATACCTCGTAAACATGTTGAACCGCCCCCAAAATCAACAAATGGT
TCTGCAGATAATGGTGCAGTGTTGAGATACCCGATCACTCAAGCATGGGA
ATGGTCTAATGAAGAAAGTATCTGGTACAATAGATCTGGTGGGAATTCTA
TGATTTTTAATTAAACTGTTTTCACCACTTTTTCTCTTTACAGCAAGAAG
ATAGAAAAGAGTCAGGTTGTGAAGTTGATATGTCATTTcgtaatcagatg
gtttgagattcTTGGCTTGTGAAGTCATTTCATGGTCCTGAGTAAAACCT
CCAATTTTTTGGTCCAAGTGTTTTCCAAGGTTGAAATACAATATAAAACG
GTGCTTACCATATGttaggattttttttaataCTTGCAAAAGTGCATAAC
TTGTAACTTGAATATCTGGACTTCGAAGAGATTTTAGTAAAACGATTTGG
ATTtgggtttttttttctcatttcattaaaataaatttacagccCAAAGA
TTTCATGTTCATACATACATACTGTTTCGTGTTTTATAGGTTTGAAAGCA
GAGAATGATCGTCTTGCAAAGATTAGAAACATCATACAGGAAATTGGCGT
TGACTTGCCTGCTACACTTACTGGCAACCCTTCTGCTCAAAAACGTGTTT
TGACAAGTAAGAAATTACAATCAATGtgagaattatgttttgaaATAATG
TTAAAAACTGAATAATTGGAATACTTTGACTACTAAGATCGGAAATAGAT
TTCTTACGGCTTAATAATCCGGAAAGAATAACCAAGATATTTTTTAAACC
TGCATATTCAACCTTCTCTGCAAGTCTTGCTTTCATAATCCTAGAAATAG
TTTGTGCAAAGATGATGATTAACGATAAAACGGAACAACTGCAACCAGAA
CAATacaatatgaatgttcaaactctCTGCGAAGGAATGGACACCTTTTT
TGAAGAATCATTGAAACATTGCANAATGGTTCTGCAGATAATGGTGCAGT
GTTGAGATACCCGATCACTCAAGCATGGGAATGGTCTAATGAAGAAAGTA
TCTGGTACAATAGATCTGGTGGGAATTCTATGATTTTTAATTAAACTGTT
TTCACCACTTTTTCTCTTTACAGCAAGAAGATAGAAAAGAGTCAGGTTGT
GAAGTTGATATGTCATTTcgtaatcagatggtttgagattcTTGGCTTGT
GAAGTCATTTCATGGTCCTGAGTAAAACCTCCAATTTTTTGGTCCAAGTG
TTTTCCAAGGTTGAAATACAATATAAAACGGTGCTTACCATATGttagga
ttttttttaataCTTGCAAAAGTGCATAACTTGTAACTTGAATATCTGGA
CTTCGAAGAGATTTTAGTAAAACGATTTGGATTtgggtttttttttctca
tttcattaaaataaatttacagccCAAAGATTTCATGTTCATACATACAT
ACTGTTTCGTGTTTTATAGGTTTGAAAGCAGAGAATGATCGTCTTGCAAA
GATTAGAAACATCATACAGGAAATTGGCGTTGACTTGCCTGCTACACTTA
CTGGCAACCCTTCTGCTCAAAAACGTGTTTTGACAAGTAAGAAATTACAA
TCAATGtgagaattatgttttgaaATAATGTTAAAAACTGAATAATTGGA
ATACTTTGACTACTAAGATCGGAAATAGATTTCTTACGGCTTAATGATCC
GGAAAGAATAAACAAGATATTTTTTAAACCTACATATTCAACCTTCTCTG
CAAGTCTTGCTTTCATAATCCTAGAAATAGTTTGTGCAAAGATGATGATT
AACGATAAAATGGAACAACTGCAACCAGAACAATacaatatgaatgttca
aactctCTGCGAAGGAATGGACACCTTTTTTGAAGAATCATTGAAACATT
GCAATTATAAGACGTTCATGTACGATATCAACAGTCTACTTTTCAATAAA
GTCTCTCTCACCGATGATAGACAGTAAGTTAATCTCGTTCAATTTTTTAT
AGGAAATAAAAGCGACTTTCGTTAAAAATAAAAGGATATCGAAAATCGAA
CGCTCTTGATAGTATCCTTTATTTACTAGTTTAGGAGCATCTTAGAACAT
CCAGGAACATCTAGTGTTTGTTTGTGAGCAATTATGAATGTTGAATTGAG
TTGATTATTAACCTTGGTACTCAAATTGTCGTTAGAAACGTTCCCAAATG
TTCTGGTGAAGTTATTGCAATGgggcatatcatgaataatgattTCTCTG
TTGAGCCTGAACTCTtggatttctttattttcagcaAACTTTGGGATAAT
CTATGGGAGCAATTCGAATCGAGGTTGCAAGACATTTTGAAGTTGGATCA
AACAATACCTCGAAAACAAATCGATGGGTTCACTATTGACTTTGATAAAC
ctgtacaattaacaaaacaagaTCTTGATGGATTTGAAATAGGCGTAAAA
GATCATGAAAAAGAGGCTGGAAACTCATCACTCGTgtcttcaaattaaag
aaaGTAGATTGAAAAGTGCTTTGATTGTTGCCATCATTTCATTGTACTAT
TATGATAGAGTTACAGGAGCCAATAGGATGTTTGTTATTGTGTAcagtat
tttcagttttttagtatCTTTTTTATAGGAATTATTTTGTAGAAGTCACA
TGTTTTCCTTTTTATTATCGATTTGTTCATTTACATCACAAGTTATATAT
GTATACTTAAATACAAAATCAACACAAGTCAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021337-exon-sc0000385-1491911889:197005..197493 | TCONS_00021337-exon-sc0000385-1491911889:197005..197493 | Clytia hemisphaerica | exon |
| TCONS_00021337-exon-sc0000385-1510915933:197005..197493 | TCONS_00021337-exon-sc0000385-1510915933:197005..197493 | Clytia hemisphaerica | exon |
| TCONS_00021337-exon-sc0000385-1575043694:197005..197493 | TCONS_00021337-exon-sc0000385-1575043694:197005..197493 | Clytia hemisphaerica | exon |
| TCONS_00021337-exon-sc0000385-1491911889:197728..198510 | TCONS_00021337-exon-sc0000385-1491911889:197728..198510 | Clytia hemisphaerica | exon |
| TCONS_00021337-exon-sc0000385-1510915933:197728..198510 | TCONS_00021337-exon-sc0000385-1510915933:197728..198510 | Clytia hemisphaerica | exon |
| TCONS_00021337-exon-sc0000385-1575043694:197728..198510 | TCONS_00021337-exon-sc0000385-1575043694:197728..198510 | Clytia hemisphaerica | exon |
| TCONS_00021337-exon-sc0000385-1491911889:199629..199827 | TCONS_00021337-exon-sc0000385-1491911889:199629..199827 | Clytia hemisphaerica | exon |
| TCONS_00021337-exon-sc0000385-1510915933:199629..199827 | TCONS_00021337-exon-sc0000385-1510915933:199629..199827 | Clytia hemisphaerica | exon |
| TCONS_00021337-exon-sc0000385-1575043694:199629..199827 | TCONS_00021337-exon-sc0000385-1575043694:199629..199827 | Clytia hemisphaerica | exon |
| TCONS_00021337-exon-sc0000385-1491911889:200139..200588 | TCONS_00021337-exon-sc0000385-1491911889:200139..200588 | Clytia hemisphaerica | exon |
| TCONS_00021337-exon-sc0000385-1510915933:200139..200588 | TCONS_00021337-exon-sc0000385-1510915933:200139..200588 | Clytia hemisphaerica | exon |
| TCONS_00021337-exon-sc0000385-1575043694:200139..200588 | TCONS_00021337-exon-sc0000385-1575043694:200139..200588 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000385 | supercontig | sc0000385:197005..200588 + |
Blast
The following BLAST results are available for this feature:
|
