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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021339 ID=TCONS_00021339|Name=TCONS_00021339|organism=Clytia hemisphaerica|type=transcript|length=1957bpRun BLAST on NCBI protein sequence of TCONS_00021339-protein >TCONS_00021339-protein ID=TCONS_00021339-protein|Name=TCONS_00021339-protein|organism=Clytia hemisphaerica|type=polypeptide|length=530bp FRYKKVRNTVKMKNRSELDERIVDRIVDECYELYSKVCKQKKKVLSKNEWRun BLAST on NCBI transcript from alignment at sc0000385:201874..217163+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021339 ID=TCONS_00021339|Name=TCONS_00021339|organism=Clytia hemisphaerica|type=transcript|length=15290bp|location=Sequence derived from alignment at sc0000385:201874..217163+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000385:201874..217163+ >TCONS_00021339 ID=TCONS_00021339|Name=TCONS_00021339|organism=Clytia hemisphaerica|type=CDS|length=14337bp|location=Sequence derived from alignment at sc0000385:201874..217163+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021339 vs. Swiss-Prot (Human)
Match: ADAT1 (tRNA-specific adenosine deaminase 1 OS=Homo sapiens GN=ADAT1 PE=1 SV=1) HSP 1 Score: 197.978 bits (502), Expect = 3.519e-55 Identity = 165/550 (30.00%), Postives = 244/550 (44.36%), Query Frame = 1
Query: 67 VDRIVDECYELYXXXXXXXXXXXXXNEWTNMACVVKTMGQVGQDI-----------EVISLATGTKCIGECHRVQTGRLLNDSHAEVLARRLFMKYLYKEIRMALDCHNTNSIFVLDGNK--VRLKEDIQFHLLTTEIPCGDASIFPKTSVV----------VSHKPSNNTDSKREHT--DELCRQPDT--NKRQRIDP--KGRTLDNQQVMEKCIYDEKLHLQKPLWVDSKTTQSFDQQKQCDPDNDIGQLDLKQNHENAGSGYKACNVSNCANTTNSSLTSKNEESKSKILQDADIFRTGAKCVPSGRQDPLGEGGQYHTTGALRIKPGRGFRTMSMSCSDKILKWCTLGIQGGLLSNFIHDGIFLSSIILTSPNFDESAFSRALSFRGRDSF---ESLVMRKVDVLHVDERPFADGKERVQQRCLNE--KITSSGVAILWCGVCAIH-SFSSNGRKHGIIKKHFNSDIACTPICKLKLFNDFHETLN--------HSPLLEKSVDGGLGRTYHHFKHSSIDYEKQRELFFK-VFHDWTRKPSAHEQF 1584
D I CYE Y +K K +EWT +A VVK + EV+S+ TGTKCIG+ + G +LNDSHAEV+ARR F +YL ++++A +SIFV K +L+ D+ F ++ PCGDASI P +H S S E + C PD+ K+ R++P R + N + QSF +QK I DL V A T + S +K++ D++RTGAKCVP D G +H G LR+KPGRG RT SMSCSDK+ +W LG QG LL + + + I+LS++++ + + A RAL R ++ + ++++ +L D F + VQ + + ++ G AI W V ++NG G KK S A + I K++LF F + L+ HS ++K +D TY +K ++ Y++ K VF W R P + QF
Sbjct: 4 ADEIAQLCYEHYGIRLPKKGKPEPNHEWTLLAAVVKIQSPADKACDTPDKPVQVTKEVVSMGTGTKCIGQSKMRKNGDILNDSHAEVIARRSFQRYLLHQLQLAATLKE-DSIFVPGTQKGVWKLRRDLIFVFFSSHTPCGDASIIPMLEFEDQPCCPVFRNWAHNSSVEASSNLEAPGNERKCEDPDSPVTKKMRLEPGTAAREVTN---------------------GAAHHQSFGKQKSGPISPGIHSCDL--------------TVEGLATVTRIAPGS------AKVI---DVYRTGAKCVPGEAGDSGKPGAAFHQVGLLRVKPGRGDRTRSMSCSDKMARWNVLGCQGALLMHLLEEPIYLSAVVIGKCPYSQEAMQRALIGRCQNVSALPKGFGVQELKILQSDLL-FEQSRSAVQAKRADSPGRLVPCGAAISWSAVPEQPLDVTANGFPQGTTKKTIGSLQARSQISKVELFRSFQKLLSRIARDKWPHSLRVQK-LD-----TYQEYKEAASSYQEAWSTLRKQVFGSWIRNPPDYHQF 501 The following BLAST results are available for this feature:
BLAST of TCONS_00021339 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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