TCONS_00021343 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021343
Unique NameTCONS_00021343
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1464

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021343 ID=TCONS_00021343|Name=TCONS_00021343|organism=Clytia hemisphaerica|type=transcript|length=1464bp
TTAACCCCTCTGCACTCTATgatattttcttatttcaaaaatgcaaaaat
caatttttgccCCCGTCTTTTAGTCTTGTCTAATTTCTGATCTCGGAACT
TGCAAAACACCTGTCCATTTGTCTTATTGATCTAAATTCCTGATAAACCT
AGATCGTAATTCTTGTACCTACTATGTTTACCTATTTTCTGATTTTGCAT
TGAACAGCTCATCCAACTTGTAAAGTTTGATGATTGGGCATTTCCAACTA
TGTATTTGAGTCACATTGCTTAAGATGGACATGGTTGGCAAGCAGTGGCT
TGTCTGGTACAGTTGCTAGGAAGATGTCTAAATGTTTTTTGAAGAGGTCT
TTAGAGTATGTCTCTTATACTTCTGGAGGGAATTAAACAACGAGGACCCT
CTTGTCAAAGATATCCCTTCCAGATGTTTATATGTTTGGTATTAACAGAT
TTGAGATTACAAGTTCTGCTCAATCTCTGACTTGAACGACAAAAGATGCC
TCCCATTTGTATTTTATGCATTTCgcaattaaatattttttgactttctg
gttccaatttttcaattagTTTTAAGAAAGATTATGGCAAAaagactttt
gaatttttataatcGTCTGCTAGTGGCACATCCATGGAAAACAACTGTTA
TTTCGACTGggGTTTTGTGTGCTTCTGGAGACGTCCTTGCACAGCAATTT
GTAGAGAAAACTCGTAAACATGATTACCAAAgaacatttaaattttttgt
catGGGAAGTTGTTTTATTGGCCCTGGTCTACGTGTTTGGTATGGAGTTC
TAGAAAAATATGTTACCGGTGCAGCACAGACTCTTGCAATAAAGAAAATG
TTGTGTGATCAATTATTATGGGCACCACCCTTTATCGCCTCTTTTTTCTG
TATCAGTGATGCCTTAAGTGGAAAATCTATGACAGAcatgaaagaaaatt
tgataaataattACCCTGGCGCATTGCAAGTGAATTATTACATTTGGCCC
TGGGTTCAGCTGgtcaacttttattttgttccaCTAAGCCATCGTGTTCT
TGTGGTGAATTGTGTTGCATTGTTCTGGAATACATTTTTAGCCTATACAG
TAAACAAGAAATCTATTCCCACTGCAATTACTGTTGAATGATAGATTTTA
TATTCACAGTTTTTATAGACTTTTCTAGATTTCGAGTTTTACTATCATTT
CATATTCAGCTTTTATCTATTTTTCCAAATCTAAGAAAATGGAAGCAGAC
AAGCACACATATTGGGTAGTGGGAGAAAAACttattgttattcaaattaa
attTGGATTGTAATATTTTCTAGCCTTTTTTTTCTGATACAAAAGATTCC
AAGAGTCCAATCATCATCGTTTTTGCGAtcttagattttatttttataga
tacattttgaatttttattacgAGAAGTATAATATTACATTTTTATTGAA
AGACTAAAAAGAAT
Run BLAST on NCBI

protein sequence of TCONS_00021343-protein

>TCONS_00021343-protein ID=TCONS_00021343-protein|Name=TCONS_00021343-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MAKRLLNFYNRLLVAHPWKTTVISTGVLCASGDVLAQQFVEKTRKHDYQR
TFKFFVMGSCFIGPGLRVWYGVLEKYVTGAAQTLAIKKMLCDQLLWAPPF
IASFFCISDALSGKSMTDMKENLINNYPGALQVNYYIWPWVQLVNFYFVP
LSHRVLVVNCVALFWNTFLAYTVNKKSIPTAITVE
Run BLAST on NCBI

transcript from alignment at sc0000385:291226..292999+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021343 ID=TCONS_00021343|Name=TCONS_00021343|organism=Clytia hemisphaerica|type=transcript|length=1774bp|location=Sequence derived from alignment at sc0000385:291226..292999+ (Clytia hemisphaerica)
TTAACCCCTCTGCACTCTATgatattttcttatttcaaaaatgcaaaaat
caatttttgccCCCGTCTTTTAGTCTTGTCTAATTTCTGATCTCGGAACT
TGCAAAACACCTGTCCATTTGTCTTATTGATCTAAATTCCTGATAAACCT
AGATCGTAATTCTTGTACCTACTATGTTTACCTATTTTCTGATTTTGCAT
TGAACAGCTCATCCAACTTGTAAAGTTTGATGATTGGGCATTTCCAACTA
TGTATTTGAGTCACATTGCTTAAGATGGACATGGTTGGCAAGCAGTGGCT
TGTCTGGTACAGTTGCTAGGAAGATGTCTAAATGTTTTTTGAAGAGGTCT
TTAGAGTATGTCTCTTATACTTCTGGAGGGAATTAAACAACGAGGACCCT
CTTGTCAAAGATATCCCTTCCAGATGTTTATATGTTTGGTATTAACAGAT
TTGAGATTACAAGTTCTGCTCAATCTCTGACTTGAACGACAAAAGATGCC
TCCCATTTGTATTTTATGCATTTCgcaattaaatattttttgactttctg
gttccaatttttcaattagTTTTAAGAAAGATTATGGCAAAaagactttt
gaatttttataatcGTCTGCTAGTGGCACATCCATGGAAAACAACTGTTA
TTTCGACTGGTAAGTAGTTTCATATTCACCTATtattctcaaaaagaaaa
agtttgtctAGTCATGTAAATTTGCAGGCCAAATTTTAAAAAGCAGAGCA
GTGTCCGCTAGGggtcaaaaagggcactttttcttctattttttcatAAC
GATTCTTGAAAGGCAGCGTCTGATAACTGGACGCTAAAAAGACATGGAAA
ATGGTTTGATTTGTACAATTTTTCAACTATTATGTTGTGAACTGGattta
aggaatcttttttttttataacttaTTTAGTTGGAAGGCTTATTTCTGtt
tactttctatttattttagggGTTTTGTGTGCTTCTGGAGACGTCCTTGC
ACAGCAATTTGTAGAGAAAACTCGTAAACATGATTACCAAAgaacattta
aattttttgtcatGGGAAGTTGTTTTATTGGCCCTGGTCTACGTGTTTGG
TATGGAGTTCTAGAAAAATATGTTACCGGTGCAGCACAGACTCTTGCAAT
AAAGAAAATGTTGTGTGATCAATTATTATGGGCACCACCCTTTATCGCCT
CTTTTTTCTGTATCAGTGATGCCTTAAGTGGAAAATCTATGACAGAcatg
aaagaaaatttgataaataattACCCTGGCGCATTGCAAGTGAATTATTA
CATTTGGCCCTGGGTTCAGCTGgtcaacttttattttgttccaCTAAGCC
ATCGTGTTCTTGTGGTGAATTGTGTTGCATTGTTCTGGAATACATTTTTA
GCCTATACAGTAAACAAGAAATCTATTCCCACTGCAATTACTGTTGAATG
ATAGATTTTATATTCACAGTTTTTATAGACTTTTCTAGATTTCGAGTTTT
ACTATCATTTCATATTCAGCTTTTATCTATTTTTCCAAATCTAAGAAAAT
GGAAGCAGACAAGCACACATATTGGGTAGTGGGAGAAAAACttattgtta
ttcaaattaaattTGGATTGTAATATTTTCTAGCCTTTTTTTTCTGATAC
AAAAGATTCCAAGAGTCCAATCATCATCGTTTTTGCGAtcttagatttta
tttttatagatacattttgaatttttattacgAGAAGTATAATATTACAT
TTTTATTGAAAGACTAAAAAGAAT

Coding sequence (CDS) from alignment at sc0000385:291226..292999+

>TCONS_00021343 ID=TCONS_00021343|Name=TCONS_00021343|organism=Clytia hemisphaerica|type=CDS|length=1116bp|location=Sequence derived from alignment at sc0000385:291226..292999+ (Clytia hemisphaerica)
ATGGCAAAaagacttttgaatttttataatcGTCTGCTAGTGGCACATCC
ATGGAAAACAACTGTTATTTCGACTGggGTTTTGTGTGCTTCTGGAGACG
TCCTTGCACAGCAATTTGTAGAGAAAACTCGTAAACATGATTACCAAAga
acatttaaattttttgtcatGGGAAGTTGTTTTATTGGCCCTGGTCTACG
TGTTTGGTATGGAGTTCTAGAAAAATATGTTACCGGTGCAGCACAGACTC
TTGCAATAAAGAAAATGTTGTGTGATCAATTATTATGGGCACCACCCTTT
ATCGCCTCTTTTTTCTGTATCAGTGATGCCTTAAGTGGAAAATCTATGAC
AGAcatgaaagaaaatttgataaataattACCCTGGCGCATTGCAAGTGA
ATTATTACATTTGGCCCTGGGTTCAGCTGgtcaacttttattttgttcca
CTAAGCCATCGTGTTCTTGTGGTGAATTGTGTTGCATTGTTCTGGAATAC
ATTTTTAGCCTATACAGTAAACAAGAAATCTATTCCCACTGCAATTACTG
TTGAATGAATGGCAAAaagacttttgaatttttataatcGTCTGCTAGTG
GCACATCCATGGAAAACAACTGTTATTTCGACTGggGTTTTGTGTGCTTC
TGGAGACGTCCTTGCACAGCAATTTGTAGAGAAAACTCGTAAACATGATT
ACCAAAgaacatttaaattttttgtcatGGGAAGTTGTTTTATTGGCCCT
GGTCTACGTGTTTGGTATGGAGTTCTAGAAAAATATGTTACCGGTGCAGC
ACAGACTCTTGCAATAAAGAAAATGTTGTGTGATCAATTATTATGGGCAC
CACCCTTTATCGCCTCTTTTTTCTGTATCAGTGATGCCTTAAGTGGAAAA
TCTATGACAGAcatgaaagaaaatttgataaataattACCCTGGCGCATT
GCAAGTGAATTATTACATTTGGCCCTGGGTTCAGCTGgtcaacttttatt
ttgttccaCTAAGCCATCGTGTTCTTGTGGTGAATTGTGTTGCATTGTTC
TGGAATACATTTTTAGCCTATACAGTAAACAAGAAATCTATTCCCACTGC
AATTACTGTTGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011954XLOC_011954Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021343-proteinTCONS_00021343-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021343-exon-sc0000385-1491911889:291226..291884TCONS_00021343-exon-sc0000385-1491911889:291226..291884Clytia hemisphaericaexon
TCONS_00021343-exon-sc0000385-1510915933:291226..291884TCONS_00021343-exon-sc0000385-1510915933:291226..291884Clytia hemisphaericaexon
TCONS_00021343-exon-sc0000385-1575043694:291226..291884TCONS_00021343-exon-sc0000385-1575043694:291226..291884Clytia hemisphaericaexon
TCONS_00021343-exon-sc0000385-1491911889:292195..292999TCONS_00021343-exon-sc0000385-1491911889:292195..292999Clytia hemisphaericaexon
TCONS_00021343-exon-sc0000385-1510915933:292195..292999TCONS_00021343-exon-sc0000385-1510915933:292195..292999Clytia hemisphaericaexon
TCONS_00021343-exon-sc0000385-1575043694:292195..292999TCONS_00021343-exon-sc0000385-1575043694:292195..292999Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:291226..292999 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.99305	5.18257	2.52861	2.37991	7.73886	6.80823	8.79535	8.7785	7.81356	6.90468	6.75914	5.15862	5.52747	6.75562	8.07423	6.04647	9.08281	7.43897	3.06517	2.38989	7.70768	7.75904	32.2183	27.3463	4.76515	5.25504	6.3183	6.90853	16.3785	17.3265
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00021343 vs. Swiss-Prot (Human)
Match: MPV17 (Protein Mpv17 OS=Homo sapiens GN=MPV17 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 3.742e-43
Identity = 73/169 (43.20%), Postives = 105/169 (62.13%), Query Frame = 2 
Query:  608 YNRLLVAHPWKTTVISTGVLCASGDVLAQQFVEKT--RKHDYQRTFKFFVMGSCFIGPGLRVWYGVLEKYVTGAAQTLAIKKMLCDQLLWAPPFIASFFCISDALSGKSMTDMKENLINNYPGALQVNYYIWPWVQLVNFYFVPLSHRVLVVNCVALFWNTFLAYTVNK 1108
            Y R L AHPWK  V++ G L   GD+++QQ VE+   ++H   RT     +G  F+GP +  WY VL++++ G  +  A+KKML DQ  +AP F+  F  +  AL+G S  D    L  +YP AL  NYY+WP VQL NFY VPL +R+ VV CVA+ WN++L++  ++
Sbjct:    7 YQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQEHQRGRTLTMVSLGCGFVGPVVGGWYKVLDRFIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVGALNGLSAQDNWAKLQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHR 175
The following BLAST results are available for this feature:
BLAST of TCONS_00021343 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MPV173.742e-4343.20Protein Mpv17 OS=Homo sapiens GN=MPV17 PE=1 SV=1[more]
back to top