TCONS_00021350 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021350
Unique NameTCONS_00021350
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2465

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021350 ID=TCONS_00021350|Name=TCONS_00021350|organism=Clytia hemisphaerica|type=transcript|length=2465bp
AAACAACCATGTATATTGTTTTTCCAATTTAAAGCGAAGGGACGAAGTCG
CGATCCGCCTCGAttcagccaatcaaatcactaGAATTCATCGCATGAGT
GAAGAACTTCACATTCGTTTTCGATTTGGTTCGTTGTCCGTGATGGAGtg
gggaatttttcaaaatggcgacggAATTCAATTCTCCGAGCACCCCAAGC
GCAAGCCGTCATGAAAAATCTCTTGGTTTGTTAACAACGAAATTCGTAAC
TCTTCTACAGGAAGCTAAGGATGGAGTACTTGATTTAAAAGTGgCAGCTG
ATCAATTGGCTGtgcgtcaaaaaagaagaatttatgATATAACAAATGTA
CTGGAAGGTATTGGTTTGATAGAAAAGAAGTCCAAGAATAGCATACAGTG
GAAGGGTGCAGGACCAGGCTGCAATTCAAGCGAAGTGTCAGCAAAATTAA
GAGACTTAAAAACTGAATTAGACAGGCTTGATAGTATTGAACGTATACTT
GATGAACAAAAACTATGGGTCCagcaaagtttaaaaaatgtatCTGAAGA
CCCAGATAATGAACGACATGCATATGTATCACATGATGATATTTGTAACT
GTTACCAAGGTGAAACATTGCTAGCTATCCAAGCACCCTCAGGCACTCAA
CTTGAAGTACCACCACCTGAAATTCAACAAGGTCAACGTCCCAAGTATCA
AATGCACCTGAACAGTTCGAATGGCTCCATATGTGTACTACTTGTAAACC
ATGATACCAAATCTGATACACCCGTTGTTGTCCCCGTTCCACCCCCGGAC
CAAGACGATTCGACTTCAAGAACAACATTACCTAGTTCGTCTTCCACAGC
AACGGATACAAAGAAAAACGTCAAATCAAGTACAGTCATCAAAGAAGAGA
CGATAGAGGAGCGCCTACAAAaCCCAATGGCATCAGGTGGTCAAGATCCT
TCTCTCGTTGAATCTGAACAAATCACTGAACTTGAAGATATCAATCTGGA
CAATTTTTGCAAAGATACCGACGCTTTTACGCCACTTTTAAGACTTTCAC
CACCTCCGGGAGACCAAGACTATTATTTTAATCTGGACGATAGTGAGGGC
GTTTGTGACTTATTTGATGTCCCATTGAAAGTATAATTATTGTTGGCTTT
CGCTATGGTGGATTCTGGTTGATCGATGCCGCAGGCCATTCTGTGTGCAT
TTTTTAAGTGGCAGGGGAGATGTTATTTgtgaaagatgtagatttatACA
TAATGTGGTTCTTGGATGCTTGGATAAACTGTTCATTGAATAGTTTTATG
GTCTTGATTGTTAAATCGATGATTATGTGTCCATTGAATGTGTAAATTGT
ACCAAATTTATATATTGGGCGCCTTCTGGTGACAAAATGAATGTAATCCT
TTGGTGAATAACATCGTGATGGTGCtatattgttcttattttatCAAGAA
TGGCCATTCCAAGCCATATTGCTTTATTTCATCAAGAATTGCCGTTTCAA
GCCATTTTGCCTTGGTACCTGAATGGATACCTCACGCCAACGTTTTAAAC
TAGCATACAGTACgtaatttgaatgaaaacaacaataacaacaacagCAT
CTAATCTTGTTTTCATCTCAAGGTAGGGAAAAATATGTTAACCCTCCTGG
TTAAATTGATATCGTTTGAACAATAACTTGCGGAAGGTTTGCAACTTTTG
TCCTGTCAGTTTGAAGtttcaattttagatttttattcgATTTTTGACTT
ACTTTTGAACAGAGAGATTTGTTACCATTTATTAGAATATTAGCTCAGAT
TATTTACATTATATAattgttttttagaaaattttcgaagccctTTTCTT
TCGAACATAATAAGTGGTTTTATATTAattctttatttatttacatACAG
ATTTAtgatttgtttgttgtttttgtgtATATCCTTTGCGTGGTTGTGCT
TTTACTGAATCTTTCTCTTTTAAACGCTTTGCGATGTTATCAATGTTGTG
ATTTTATTtatgaagtttaaaaaaatttatgcgACCTCGTACCATTGAGG
acttgattaatttttttacttgatgatattccactcacaaatatcttttc
aacgagcaaaAAATCGCAATGTCATTCCAAATTCTATCAAGAGCTACACC
CATTTTtggtctcagctgcaaattattttgagattggCCATATTCAACAC
TCGAGCACTTTGATATGATACATATGTTCACAACAGCATGGTTTAGGGCA
TAATATGTTAATAGCTCAATTCTTATAACAGATTATAAATATTATATAGA
ATATTGTATGctatattttgatttgatgttttgaaaGCATAACCTAGTAG
TAGAAAAAACACctagatagaatgatagaaacaCAGAAAAAACGTTCGAC
AACGATTCTATGCTTTCCTTCGAAGTAAAGGAACGTTTTTCAACTGAAAT
TTCACTAACGTAATA
Run BLAST on NCBI

protein sequence of TCONS_00021350-protein

>TCONS_00021350-protein ID=TCONS_00021350-protein|Name=TCONS_00021350-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
MATEFNSPSTPSASRHEKSLGLLTTKFVTLLQEAKDGVLDLKVAADQLAV
RQKRRIYDITNVLEGIGLIEKKSKNSIQWKGAGPGCNSSEVSAKLRDLKT
ELDRLDSIERILDEQKLWVQQSLKNVSEDPDNERHAYVSHDDICNCYQGE
TLLAIQAPSGTQLEVPPPEIQQGQRPKYQMHLNSSNGSICVLLVNHDTKS
DTPVVVPVPPPDQDDSTSRTTLPSSSSTATDTKKNVKSSTVIKEETIEER
LQNPMASGGQDPSLVESEQITELEDINLDNFCKDTDAFTPLLRLSPPPGD
QDYYFNLDDSEGVCDLFDVPLKV
Run BLAST on NCBI

transcript from alignment at sc0000385:7150..15831-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021350 ID=TCONS_00021350|Name=TCONS_00021350|organism=Clytia hemisphaerica|type=transcript|length=8682bp|location=Sequence derived from alignment at sc0000385:7150..15831- (Clytia hemisphaerica)
AAACAACCATGTATATTGTTTTTCCAATTTAAAGCGAAGGGACGAAGTCG CGATCCGCCTCGATTCAGCCAATCAAATCACTAGAATTCATCGCATGAGT GAAGAACTTCACATTCGTTTTCGATTTGGTTCGTTGTCCGTGATGGAGTG GGGAATTTTTCAAAATGGCGACGGAATTCAATTCTCCGAGCACCCCAAGC GCAAGCCGTCATGAAAAATCTCTTGGTTTGTTAACAACGAAATTCGTAAC TCTTCTACAGGAAGCTAAGGATGGAGTACTTGATTTAAAAGTGGTAAGAT ATTTTTTTAAGAATATATGATTTGATATTGTTTTAGCAAAAAAAAAAGAT TTCACAGTTTAAAAGTCACCCTTGGCAGCAACCAACCAAGGTGTTCTGGT TTGCTGCCTGGTCTTCCTTAAAGTGATTTACATTCTGAAATCAGAATACC TCTTGCTGGCGCTCAGTTGCTTTGCTAAAACATGGTTTGGGCCATTCCAG AAAATTTTCGTACTGTAGAAGAGGTAGGGTGGTCAGAGGAAATTTCAAAC TTACTTGCAGAATACCAAACCAAGATTAATGGAAAGCCATAACCATCAGA AGAAAAATGAGGGGTCATTTACCTTCCAATTCTTTAAAGTTCCAAAGATA TTACATTTTGAAGTTCAATTTTTCAAGCATTTTCGTGCACGCATCGCCAG CCATTTTGTACCTTCACGGCACCAAAAGCGAAAGTGTTTTATGAAAAATT CCGCGCTGGAGGTTTGGTGCGAGTTTTATTTTCCGTAGATCAGTGAGGCT AGGCTGGAACTTCAATTTTTGAGGATTACGATTTTACCAGTTTTTTAGCG ATTTTTGCCTCGCTAACCCAAATCTCGCAACCTCTTTACCTTAAGCCAGN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNGGATCGATTCTCAACAACAAAAT ACATCTTTTGGTCTTTGGGTTTGTTTCTGACGTTTTTTCTTCAAAGAATA TCGATCACTTTCCTTTTCCCCTTGAGTGTGCGAGAAAAAAATGACAAGCT CGTGTTCGTGCGGGCGAATAAAGATGAGGCGGCAATCTTGCACTGAGGGT GCTACTTAGTTTCCGCCCTATTTTGCGCCCACGATAGAATGGTTCAACGA CTCTCTTTAAAGGCCCAGTACGCTAAAGCTCTGGGCCAAAAATTGGGGAA ATATTTTTTCAGAAATTGGAAAATCAGGGAGACATTTTGCCAAAATTTGG GAAATCGGAGAAAGTTTTTTCAAAAATCAAAAATGCGCGAGATTGCGTGA TTGCTCTGATAATGCAGGCCTCTCCACGAATAAAATCAAACGTGATCGAT GAATTGATCTTGTAAATAAATTGATGCGCGCAAATTTTTTTACCAAATTG CTCGTATCAATCAAATTTTATGCGCGCGATTTCTAAAAAATGCTCCCCAG AAATATTTTTGATTTAATCATATAGATTCTTCCCTTATCTCTATCATAAT GAGCTTCTCATATTACAGGATGCTAAAGTGTTTTATTGGACCTACCTCCG GGTACCCCGGTGGAGGTTCTATAAATTAACCCATGTCCGTTTGTTCGTTC GTCCGTCCGTCTGTTACCAGCTTTTCTCAGGATTGGCTCATTAGTTTTTT CTGATTTTTTGCACAATTCAATGATGCAAAATGGCAATGCCCAGAACGTG ACGGAGCCCGATTTTTGAGAAAAAATTTATTTGGGCAAATTTGGGCCAAA AACTACCTAAAAATAGGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NTCGCCTTAAAAAACGGATTTTCGTATTTTGGGGAAATTCCCTTTAACCA AATAAGAAAATATAGCTTTTCTCAAAGTTGACTCATTATTTTTTTCAGAT TTTTGCACAATGATGCAAAATGGCAATGCCTAAAATGTGACGGAGCCCGA TTTTTGAAAAAAAATATATTTGGGTAAATTTGGGCAAATTTGGGCAAAAA ACTGCCTAAAAATAGGGTTTTTTGGACTTTGTGTAAAATCCTGTCATTAC TTTTTTCTGATTTTTTTACAAAGATGGAGGGCAAGATTCTCTAAAGAATG GCTGAAGTGGATTTTCCTGGAAAATTCTTATTCGCCTTAAAAGACGGATT TTCGTATTTTGGGAAATTCACTGCTTTAACCAAATAAGAAAATATAGCTT TTCACAATGTTGACTTATAGTTTTTTTCTGATTTTTTGCACAATGATGCA AAATGGCAATTCCCAAAATGTGACGGAGCCAGACTTTTTAGGAAAATTGT TTTGGGCAAATTTGGGCCAAAAACAGCTTTAAAAGGTTTTTTGGGCCTGA ATGGTTTAAGTGATTTTCGTATTTGGGGAAATTCCTTTTTACCATTTTAC ATTATTCAACACACAAGCTTTATTTTTCCATNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTC CATTCTGAATTTTTGTACAATTATTGTCACTTTTTTCTTATTTTCATCTG ATGTTAATCATTAGGTAGGTCCATTCAGCATGTTGCTTGTTTTTCTATTC AAACTTTTGTTAATTAAATAGTTTTAAAGAAGTCTATAATTCCCATTTTC AATTGAGCTTATAAGCTGCAAGGTCACCCTTAAACAAAGATAACTTTATT ATGATGGAAACCTAAAGTAATTGGCGCGAGCGACTTTTCGCCCTACTGAT TATGTTCAATCGATTCAATTGCATTCGCTCGCATTAATCACTCCTGTCTC CTGTGGTGCTTACGCTCTCACTTTTATCTGATTTTCTAATGGCGTATTGG CGGTTGCCCATTTGCTAAAGCTCTAAAGGAGTGGGCTAATCTACACTCAA TCAATCTTATCAAACATTAACGTAATCGAACTAATCAAACATAATCGAAT CTCAATTGAATGTAATTTTAATACAATCGAATATAACCTAGGAATCGGCT GTTCAATTGAGATTTGATCATTGATTTGTAAAATCTTTGATAGCCAACCT GTCTGGTTGGTATTTTACAGATCAGAATTTAAACTTTATATACTAAAATC TTGTATTGACTGATTCGCTTGTTCAATTTGACTGAAATTTGTTCCTGAAG GTTGATATATATATGTCAAATGAAAGAGACTAGTCACAGAAAAAAGATGA CTTAAAATTTTCACCAGTGATTGCTATTGATCATCTGTGACAGTATGCAA ATTATAATTTAGTTATATAAGTGGTTGGTATTTTACAGAGCGTCAAATGC TCACTTTCAGCATAACCACTGGTCTGTGATGCACAAACGGTTAAGCTCTT TAGGTAATTAAACGGTTGGTAAACCACAACTTTAAAAAGTACAGGTTCAT GAGATTTTAGAACTTACGAGTACATGACCCATGACCCCCTGTAATTAATG TCCTTTACATTCAGATCTTTATTTTTTCAGGCAGCTGATCAATTGGCTGT GCGTCAAAAAAGAAGAATTTATGATATAACAAATGTACTGGAAGGTATTG GTTTGATAGAAAAGAAGTCCAAGAATAGCATACAGTGGAAGTATGATAGT TCTTTTGTCACTTTTTCAGTTTTGACATTTCTGGACCTACCTCCGGGTAC CCCGGTGGAGGTCCTTTAAATTAACGTTCGTTCGTTACCAGCTTTTTTCG GGATTAGCTCATTACTTTGTTCTGTTTTTTGGCACAATGATGCAAAATGA TGATTCCTAAAAAGTGACGGAGCCCGATTTTAGAAAAAAACAATTTTCCG GCCGAAAAAGCTGGAAATATGCTGGGAAAAAACGTTTTTTTGGCATTTTC TCGAGATATTATAATTAGCTTTTTCTTATTCTTTGCTCAAAGGTGCGTAT TAACAATGCCCAAAACATGGCCGAGTCCGATTTTTGAGAAAATTTCTTTT CCAGTTGAAAATGCCGGAAATCGTCGTTTTTGCAGATTTTCATTGGATTT TGTCCTTATATTTCTATGTTCTTCACACAAAAACATTATTGATAACAATG CTCACCATCAAGCATGATTCAATGGTCAATAAAACTGATTTTTGCGACCA GAANATTTTTGCGACCAGAACTTTCTATTTNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNATTTTTTCCCTACAACCCTTCCCTCTCCC CCCATCAACAATCAATGATGAATTTATTGTGTTATGCATTTTCGCTAAAC GCTATATTTTCTGACTGATTTTTTTTCATTTTTCTCCTCGCATTGCTATC TAACTTTCATCATCAGTTAGGTCCATTCAGCATCTAGCTTGTTATAATTA TTATCCTTATAACATTTTTTGAGTCCTTGTAGTTTCACTCAGGCTGACAA TATTGAAAGGCTTGGTGAAACTCATTCGAATGATTTCATCCACACGTCAA ATAATAATCTATGGTTATAAGAGCGAAAGTGAGATAGTGATTGCCATTGT GTTGATGTTGAAATAAGATTTTTGACTAGAAAAACAACTTTTTATAACGT TTTAATGCCAGATTAATTAAATCAAAGAAGTAGAACTTATTAGAAGTGTC TTTTTGCACACAGCTCCACATTTATGTCCATTTGATCTTTTTGATAAGCC CACACAATATTGTATTGATTTTCGCAAAACCAATTCTGTTTCAGGGGTGC AGGACCAGGCTGCAATTCAAGCGAAGTGTCAGCAAAATTAAGAGACTTAA AAACTGAATTAGACAGGCTTGATAGTATTGAACGTATACTTGATGAACAA AAACTATGGGTCCAGCAAAGTTTAAAAAATGTATCTGAAGACCCAGATAA TGAACGACATGCATATGTATCACATGATGATATTTGTAACTGTTACCAAG GTGAAACATTGCTAGCTATCCAAGCACCCTCAGGCACTCAACTTGAAGTA CCACCACCTGAAATTGTAAGTTGATTTTCATTTTCCTTTTCGTTTTATCA TCTTTAAACCAATATAATATTCAAGCATTCTTCACAAACATATTGACCTA GAATCCAAAAAACATCTGTCGACCTTTAAAGTTGGACAGCTTGGAGAGGT TGCTTTAGATAAATGAATTGTGGTTTAAAAAAAAAAAAAATTAAGATTTT GAGGGCCTCTGGACTGCCCCGGACGGTTTTTTCCAAAACGAAGCCATAAC CTTAGGACAGCCTAAACAAAGGCTTCAAGAAAGCTCAATTCCACTAAAAC CCTGGGATCTTGTTCCTTGAGGACTTATAAATATATATAGTCCCAACATG ACTGGGGAAAATTGACGCACAAGTTGGGTTTTGAAGTCATTTCCAGTCAA TTTTCTCGAGTTACATTTGGAAATCAACTATATCCATTCAAAACTTCTCT ATTTTGTTTTTCGAGAGCTATCGATTGGTATAAGTGGTTTTTTGAAATTT GAAATTTTGTCAAATTTTAGGGGTCAAGAGGTTTTGCCTGTGACGTCAGT TTTTGAGTCATAGCAAATTTTCCTAGACCTAAGCAAAAAAAAACCCTCGC ACAAAAGTCTTTAAATACTTCATTCTTTGAATCGGACCAGGTTTGGTTGC GTAGTATAAAAGATGTCACAGGTCCTAAGGGTTTTCTGATTTAGTTGTAT CATATTTCTCTCTTAGCAACAAGGTCAACGTCCCAAGTATCAAATGCACC TGAACAGTTCGAATGGCTCCATATGTGTACTACTTGTAAACCATGATACC AAATCTGATACACCCGTTGTTGTCCCCGTTCCACCCCCGGACCAAGACGA TTCGACTTCAAGAACAACATTACCTAGTTCGTCTTCCACAGCAACGGATA CAAAGAAAAACGTCAAATCAAGTACAGTCATCAAAGAAGAGACGATAGAG GAGCGCCTACAAAGTAAAATTTCTCCAATCATTATTAATTTTCTCGGACT GAAGTTTTGGTTCCCTTTTTGCCGTACTAAGTTTTCGAGAACAGTCCATT TTTAGATCCCTGGAGTAAACATTACTTAGTTTAGGTTGTTTTATTTGCAA TTTTCATTATTGTATTGTTAAATTTTTTAGACCCAATGGCATCAGGTGGT CAAGATCCTTCTCTCGTTGAATCTGAACAAATCACTGGTAAAATTTCCTT TCAATTATGTAAAGCCTGCAATGACACTAAAATTATTTCTATCATGAACT TGAACCTGGCCCTTTTAGCCTGTAAAATCTTCTAAAACTAATTTACTTTC ATACTTNCTGGCCCTTTTATCCTGTAAAATCTTCTAAAACTGATTTACTT TCATACTGCAGAACTTGAAGATATCAATCTGGACAATTTTTGCAAAGATA CCGACGGTAGGAATTGGTTTTATTATTAATTTTATAACACTTTCATTCAT CATACAAAATTTATTCTCTGAAAATGTGAAAGAAATTATTTCCAAGAAGA TAAGGTATCTTTTTCAATAGTCCATGAACTATGACTGAGTTTTGAAGAAT TTTATACAATCCCCTAGGTTTATAAAACTATGAAAATTATATTTTGTATA AAATGAGCGCTTCATTGGAAAAATTAATATCCAGCAAGATGTGTATTTTT TGAAAGTCAGCTCTAATAAAATCTTCTTCTTTTTCTCTAGCTTTTACGCC ACTTTTAAGACTTTCACCACCTCCGGGAGACCAAGACTATTATTTTAATC TGGACGATAGTGAGGGCGTTTGTGACTTATTTGATGTCCCATTGAAAGTA TAATTATTGTTGGCTTTCGCTATGGTGGATTCTGGTTGATCGATGCCGCA GGCCATTCTGTGTGCATTTTTTAAGTGGCAGGGGAGATGTTATTTGTGAA AGATGTAGATTTATACATAATGTGGTTCTTGGATGCTTGGATAAACTGTT CATTGAATAGTTTTATGGTCTTGATTGTTAAATCGATGATTATGTGTCCA TTGAATGTGTAAATTGTACCAAATTTATATATTGGGCGCCTTCTGGTGAC AAAATGAATGTAATCCTTTGGTGAATAACATCGTGATGGTGCTATATTGT TCTTATTTTATCAAGAATGGCCATTCCAAGCCATATTGCTTTATTTCATC AAGAATTGCCGTTTCAAGCCATTTTGCCTTGGTACCTGAATGGATACCTC ACGCCAACGTTTTAAACTAGCATACAGTACGTAATTTGAATGAAAACAAC AATAACAACAACAGCATCTAATCTTGTTTTCATCTCAAGGTAGGGAAAAA TATGTTAACCCTCCTGGTTAAATTGATATCGTTTGAACAATAACTTGCGG AAGGTTTGCAACTTTTGTCCTGTCAGTTTGAAGTTTCAATTTTAGATTTT TATTCGATTTTTGACTTACTTTTGAACAGAGAGATTTGTTACCATTTATT AGAATATTAGCTCAGATTATTTACATTATATAATTGTTTTTTAGAAAATT TTCGAAGCCCTTTTCTTTCGAACATAATAAGTGGTTTTATATTAATTCTT TATTTATTTACATACAGATTTATGATTTGTTTGTTGTTTTTGTGTATATC CTTTGCGTGGTTGTGCTTTTACTGAATCTTTCTCTTTTAAACGCTTTGCG ATGTTATCAATGTTGTGATTTTATTTATGAAGTTTAAAAAAATTTATGCG ACCTCGTACCATTGAGGACTTGATTAATTTTTTTACTTGATGATATTCCA CTCACAAATATCTTTTCAACGAGCAAAAAATCGCAATGTCATTCCAAATT CTATCAAGAGCTACACCCATTTTTGGTCTCAGCTGCAAATTATTTTGAGA TTGGCCATATTCAACACTCGAGCACTTTGATATGATACATATGTTCACAA CAGCATGGTTTAGGGCATAATATGTTAATAGCTCAATTCTTATAACAGAT TATAAATATTATATAGAATATTGTATGCTATATTTTGATTTGATGTTTTG AAAGCATAACCTAGTAGTAGAAAAAACACCTAGATAGAATGATAGAAACA CAGAAAAAACGTTCGACAACGATTCTATGCTTTCCTTCGAAGTAAAGGAA CGTTTTTCAACTGAAATTTCACTAACGTAATA

Coding sequence (CDS) from alignment at sc0000385:7150..15831-

>TCONS_00021350 ID=TCONS_00021350|Name=TCONS_00021350|organism=Clytia hemisphaerica|type=CDS|length=6804bp|location=Sequence derived from alignment at sc0000385:7150..15831- (Clytia hemisphaerica)
CTTTTACGCCACTTTTAAGACTTTCACCACCTCCGGGAGACCAAGACTAT
TATTTTAATCTGGACGATAGTGAGGGCGTTTGTGACTTATTTGATGTCCC
ATTGAAAGTATAAAACTTGAAGATATCAATCTGGACAATTTTTGCAAAGA
TACCGACGACCCAATGGCATCAGGTGGTCAAGATCCTTCTCTCGTTGAAT
CTGAACAAATCACTGCAACAAGGTCAACGTCCCAAGTATCAAATGCACCT
GAACAGTTCGAATGGCTCCATATGTGTACTACTTGTAAACCATGATACCA
AATCTGATACACCCGTTGTTGTCCCCGTTCCACCCCCGGACCAAGACGAT
TCGACTTCAAGAACAACATTACCTAGTTCGTCTTCCACAGCAACGGATAC
AAAGAAAAACGTCAAATCAAGTACAGTCATCAAAGAAGAGACGATAGAGG
AGCGCCTACAAAGGGTGCAGGACCAGGCTGCAATTCAAGCGAAGTGTCAG
CAAAATTAAGAGACTTAAAAACTGAATTAGACAGGCTTGATAGTATTGAA
CGTATACTTGATGAACAAAAACTATGGGTCCAGCAAAGTTTAAAAAATGT
ATCTGAAGACCCAGATAATGAACGACATGCATATGTATCACATGATGATA
TTTGTAACTGTTACCAAGGTGAAACATTGCTAGCTATCCAAGCACCCTCA
GGCACTCAACTTGAAGTACCACCACCTGAAATTGCAGCTGATCAATTGGC
TGTGCGTCAAAAAAGAAGAATTTATGATATAACAAATGTACTGGAAGGTA
TTGGTTTGATAGAAAAGAAGTCCAAGAATAGCATACAGTGGAAATGGCGA
CGGAATTCAATTCTCCGAGCACCCCAAGCGCAAGCCGTCATGAAAAATCT
CTTGGTTTGTTAACAACGAAATTCGTAACTCTTCTACAGGAAGCTAAGGA
TGGAGTACTTGATTTAAAAGTGCTTTTACGCCACTTTTAAGACTTTCACC
ACCTCCGGGAGACCAAGACTATTATTTTAATCTGGACGATAGTGAGGGCG
TTTGTGACTTATTTGATGTCCCATTGAAAGTATAAAACTTGAAGATATCA
ATCTGGACAATTTTTGCAAAGATACCGACGACCCAATGGCATCAGGTGGT
CAAGATCCTTCTCTCGTTGAATCTGAACAAATCACTGCAACAAGGTCAAC
GTCCCAAGTATCAAATGCACCTGAACAGTTCGAATGGCTCCATATGTGTA
CTACTTGTAAACCATGATACCAAATCTGATACACCCGTTGTTGTCCCCGT
TCCACCCCCGGACCAAGACGATTCGACTTCAAGAACAACATTACCTAGTT
CGTCTTCCACAGCAACGGATACAAAGAAAAACGTCAAATCAAGTACAGTC
ATCAAAGAAGAGACGATAGAGGAGCGCCTACAAAGGGTGCAGGACCAGGC
TGCAATTCAAGCGAAGTGTCAGCAAAATTAAGAGACTTAAAAACTGAATT
AGACAGGCTTGATAGTATTGAACGTATACTTGATGAACAAAAACTATGGG
TCCAGCAAAGTTTAAAAAATGTATCTGAAGACCCAGATAATGAACGACAT
GCATATGTATCACATGATGATATTTGTAACTGTTACCAAGGTGAAACATT
GCTAGCTATCCAAGCACCCTCAGGCACTCAACTTGAAGTACCACCACCTG
AAATTGCAGCTGATCAATTGGCTGTGCGTCAAAAAAGAAGAATTTATGAT
ATAACAAATGTACTGGAAGGTATTGGTTTGATAGAAAAGAAGTCCAAGAA
TAGCATACAGTGGAAATGGCGACGGAATTCAATTCTCCGAGCACCCCAAG
CGCAAGCCGTCATGAAAAATCTCTTGGTTTGTTAACAACGAAATTCGTAA
CTCTTCTACAGGAAGCTAAGGATGGAGTACTTGATTTAAAAGTGCTTTTA
CGCCACTTTTAAGACTTTCACCACCTCCGGGAGACCAAGACTATTATTTT
AATCTGGACGATAGTGAGGGCGTTTGTGACTTATTTGATGTCCCATTGAA
AGTATAAAACTTGAAGATATCAATCTGGACAATTTTTGCAAAGATACCGA
CGACCCAATGGCATCAGGTGGTCAAGATCCTTCTCTCGTTGAATCTGAAC
AAATCACTGCAACAAGGTCAACGTCCCAAGTATCAAATGCACCTGAACAG
TTCGAATGGCTCCATATGTGTACTACTTGTAAACCATGATACCAAATCTG
ATACACCCGTTGTTGTCCCCGTTCCACCCCCGGACCAAGACGATTCGACT
TCAAGAACAACATTACCTAGTTCGTCTTCCACAGCAACGGATACAAAGAA
AAACGTCAAATCAAGTACAGTCATCAAAGAAGAGACGATAGAGGAGCGCC
TACAAAGGGTGCAGGACCAGGCTGCAATTCAAGCGAAGTGTCAGCAAAAT
TAAGAGACTTAAAAACTGAATTAGACAGGCTTGATAGTATTGAACGTATA
CTTGATGAACAAAAACTATGGGTCCAGCAAAGTTTAAAAAATGTATCTGA
AGACCCAGATAATGAACGACATGCATATGTATCACATGATGATATTTGTA
ACTGTTACCAAGGTGAAACATTGCTAGCTATCCAAGCACCCTCAGGCACT
CAACTTGAAGTACCACCACCTGAAATTGCAGCTGATCAATTGGCTGTGCG
TCAAAAAAGAAGAATTTATGATATAACAAATGTACTGGAAGGTATTGGTT
TGATAGAAAAGAAGTCCAAGAATAGCATACAGTGGAAATGGCGACGGAAT
TCAATTCTCCGAGCACCCCAAGCGCAAGCCGTCATGAAAAATCTCTTGGT
TTGTTAACAACGAAATTCGTAACTCTTCTACAGGAAGCTAAGGATGGAGT
ACTTGATTTAAAAGTGCTTTTACGCCACTTTTAAGACTTTCACCACCTCC
GGGAGACCAAGACTATTATTTTAATCTGGACGATAGTGAGGGCGTTTGTG
ACTTATTTGATGTCCCATTGAAAGTATAAAACTTGAAGATATCAATCTGG
ACAATTTTTGCAAAGATACCGACGACCCAATGGCATCAGGTGGTCAAGAT
CCTTCTCTCGTTGAATCTGAACAAATCACTGCAACAAGGTCAACGTCCCA
AGTATCAAATGCACCTGAACAGTTCGAATGGCTCCATATGTGTACTACTT
GTAAACCATGATACCAAATCTGATACACCCGTTGTTGTCCCCGTTCCACC
CCCGGACCAAGACGATTCGACTTCAAGAACAACATTACCTAGTTCGTCTT
CCACAGCAACGGATACAAAGAAAAACGTCAAATCAAGTACAGTCATCAAA
GAAGAGACGATAGAGGAGCGCCTACAAAGGGTGCAGGACCAGGCTGCAAT
TCAAGCGAAGTGTCAGCAAAATTAAGAGACTTAAAAACTGAATTAGACAG
GCTTGATAGTATTGAACGTATACTTGATGAACAAAAACTATGGGTCCAGC
AAAGTTTAAAAAATGTATCTGAAGACCCAGATAATGAACGACATGCATAT
GTATCACATGATGATATTTGTAACTGTTACCAAGGTGAAACATTGCTAGC
TATCCAAGCACCCTCAGGCACTCAACTTGAAGTACCACCACCTGAAATTG
CAGCTGATCAATTGGCTGTGCGTCAAAAAAGAAGAATTTATGATATAACA
AATGTACTGGAAGGTATTGGTTTGATAGAAAAGAAGTCCAAGAATAGCAT
ACAGTGGAAATGGCGACGGAATTCAATTCTCCGAGCACCCCAAGCGCAAG
CCGTCATGAAAAATCTCTTGGTTTGTTAACAACGAAATTCGTAACTCTTC
TACAGGAAGCTAAGGATGGAGTACTTGATTTAAAAGTGCTTTTACGCCAC
TTTTAAGACTTTCACCACCTCCGGGAGACCAAGACTATTATTTTAATCTG
GACGATAGTGAGGGCGTTTGTGACTTATTTGATGTCCCATTGAAAGTATA
AAACTTGAAGATATCAATCTGGACAATTTTTGCAAAGATACCGACGACCC
AATGGCATCAGGTGGTCAAGATCCTTCTCTCGTTGAATCTGAACAAATCA
CTGCAACAAGGTCAACGTCCCAAGTATCAAATGCACCTGAACAGTTCGAA
TGGCTCCATATGTGTACTACTTGTAAACCATGATACCAAATCTGATACAC
CCGTTGTTGTCCCCGTTCCACCCCCGGACCAAGACGATTCGACTTCAAGA
ACAACATTACCTAGTTCGTCTTCCACAGCAACGGATACAAAGAAAAACGT
CAAATCAAGTACAGTCATCAAAGAAGAGACGATAGAGGAGCGCCTACAAA
GGGTGCAGGACCAGGCTGCAATTCAAGCGAAGTGTCAGCAAAATTAAGAG
ACTTAAAAACTGAATTAGACAGGCTTGATAGTATTGAACGTATACTTGAT
GAACAAAAACTATGGGTCCAGCAAAGTTTAAAAAATGTATCTGAAGACCC
AGATAATGAACGACATGCATATGTATCACATGATGATATTTGTAACTGTT
ACCAAGGTGAAACATTGCTAGCTATCCAAGCACCCTCAGGCACTCAACTT
GAAGTACCACCACCTGAAATTGCAGCTGATCAATTGGCTGTGCGTCAAAA
AAGAAGAATTTATGATATAACAAATGTACTGGAAGGTATTGGTTTGATAG
AAAAGAAGTCCAAGAATAGCATACAGTGGAAATGGCGACGGAATTCAATT
CTCCGAGCACCCCAAGCGCAAGCCGTCATGAAAAATCTCTTGGTTTGTTA
ACAACGAAATTCGTAACTCTTCTACAGGAAGCTAAGGATGGAGTACTTGA
TTTAAAAGTGCTTTTACGCCACTTTTAAGACTTTCACCACCTCCGGGAGA
CCAAGACTATTATTTTAATCTGGACGATAGTGAGGGCGTTTGTGACTTAT
TTGATGTCCCATTGAAAGTATAAAACTTGAAGATATCAATCTGGACAATT
TTTGCAAAGATACCGACGACCCAATGGCATCAGGTGGTCAAGATCCTTCT
CTCGTTGAATCTGAACAAATCACTGCAACAAGGTCAACGTCCCAAGTATC
AAATGCACCTGAACAGTTCGAATGGCTCCATATGTGTACTACTTGTAAAC
CATGATACCAAATCTGATACACCCGTTGTTGTCCCCGTTCCACCCCCGGA
CCAAGACGATTCGACTTCAAGAACAACATTACCTAGTTCGTCTTCCACAG
CAACGGATACAAAGAAAAACGTCAAATCAAGTACAGTCATCAAAGAAGAG
ACGATAGAGGAGCGCCTACAAAGGGTGCAGGACCAGGCTGCAATTCAAGC
GAAGTGTCAGCAAAATTAAGAGACTTAAAAACTGAATTAGACAGGCTTGA
TAGTATTGAACGTATACTTGATGAACAAAAACTATGGGTCCAGCAAAGTT
TAAAAAATGTATCTGAAGACCCAGATAATGAACGACATGCATATGTATCA
CATGATGATATTTGTAACTGTTACCAAGGTGAAACATTGCTAGCTATCCA
AGCACCCTCAGGCACTCAACTTGAAGTACCACCACCTGAAATTGCAGCTG
ATCAATTGGCTGTGCGTCAAAAAAGAAGAATTTATGATATAACAAATGTA
CTGGAAGGTATTGGTTTGATAGAAAAGAAGTCCAAGAATAGCATACAGTG
GAAATGGCGACGGAATTCAATTCTCCGAGCACCCCAAGCGCAAGCCGTCA
TGAAAAATCTCTTGGTTTGTTAACAACGAAATTCGTAACTCTTCTACAGG
AAGCTAAGGATGGAGTACTTGATTTAAAAGTGCTTTTACGCCACTTTTAA
GACTTTCACCACCTCCGGGAGACCAAGACTATTATTTTAATCTGGACGAT
AGTGAGGGCGTTTGTGACTTATTTGATGTCCCATTGAAAGTATAAAACTT
GAAGATATCAATCTGGACAATTTTTGCAAAGATACCGACGACCCAATGGC
ATCAGGTGGTCAAGATCCTTCTCTCGTTGAATCTGAACAAATCACTGCAA
CAAGGTCAACGTCCCAAGTATCAAATGCACCTGAACAGTTCGAATGGCTC
CATATGTGTACTACTTGTAAACCATGATACCAAATCTGATACACCCGTTG
TTGTCCCCGTTCCACCCCCGGACCAAGACGATTCGACTTCAAGAACAACA
TTACCTAGTTCGTCTTCCACAGCAACGGATACAAAGAAAAACGTCAAATC
AAGTACAGTCATCAAAGAAGAGACGATAGAGGAGCGCCTACAAAGGGTGC
AGGACCAGGCTGCAATTCAAGCGAAGTGTCAGCAAAATTAAGAGACTTAA
AAACTGAATTAGACAGGCTTGATAGTATTGAACGTATACTTGATGAACAA
AAACTATGGGTCCAGCAAAGTTTAAAAAATGTATCTGAAGACCCAGATAA
TGAACGACATGCATATGTATCACATGATGATATTTGTAACTGTTACCAAG
GTGAAACATTGCTAGCTATCCAAGCACCCTCAGGCACTCAACTTGAAGTA
CCACCACCTGAAATTGCAGCTGATCAATTGGCTGTGCGTCAAAAAAGAAG
AATTTATGATATAACAAATGTACTGGAAGGTATTGGTTTGATAGAAAAGA
AGTCCAAGAATAGCATACAGTGGAAATGGCGACGGAATTCAATTCTCCGA
GCACCCCAAGCGCAAGCCGTCATGAAAAATCTCTTGGTTTGTTAACAACG
AAATTCGTAACTCTTCTACAGGAAGCTAAGGATGGAGTACTTGATTTAAA
AGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011960XLOC_011960Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021350-proteinTCONS_00021350-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021350-exon-sc0000385-1575043694:15539..15831TCONS_00021350-exon-sc0000385-1575043694:15539..15831Clytia hemisphaericaexon
TCONS_00021350-exon-sc0000385-1575043694:11692..11801TCONS_00021350-exon-sc0000385-1575043694:11692..11801Clytia hemisphaericaexon
TCONS_00021350-exon-sc0000385-1575043694:10267..10537TCONS_00021350-exon-sc0000385-1575043694:10267..10537Clytia hemisphaericaexon
TCONS_00021350-exon-sc0000385-1575043694:9319..9565TCONS_00021350-exon-sc0000385-1575043694:9319..9565Clytia hemisphaericaexon
TCONS_00021350-exon-sc0000385-1575043694:9095..9151TCONS_00021350-exon-sc0000385-1575043694:9095..9151Clytia hemisphaericaexon
TCONS_00021350-exon-sc0000385-1575043694:8876..8920TCONS_00021350-exon-sc0000385-1575043694:8876..8920Clytia hemisphaericaexon
TCONS_00021350-exon-sc0000385-1575043694:7150..8591TCONS_00021350-exon-sc0000385-1575043694:7150..8591Clytia hemisphaericaexon
TCONS_00021350-exon-sc0000385-1510915933:15539..15831TCONS_00021350-exon-sc0000385-1510915933:15539..15831Clytia hemisphaericaexon
TCONS_00021350-exon-sc0000385-1510915933:11692..11801TCONS_00021350-exon-sc0000385-1510915933:11692..11801Clytia hemisphaericaexon
TCONS_00021350-exon-sc0000385-1510915933:10267..10537TCONS_00021350-exon-sc0000385-1510915933:10267..10537Clytia hemisphaericaexon
TCONS_00021350-exon-sc0000385-1510915933:9319..9565TCONS_00021350-exon-sc0000385-1510915933:9319..9565Clytia hemisphaericaexon
TCONS_00021350-exon-sc0000385-1510915933:9095..9151TCONS_00021350-exon-sc0000385-1510915933:9095..9151Clytia hemisphaericaexon
TCONS_00021350-exon-sc0000385-1510915933:8876..8920TCONS_00021350-exon-sc0000385-1510915933:8876..8920Clytia hemisphaericaexon
TCONS_00021350-exon-sc0000385-1510915933:7150..8591TCONS_00021350-exon-sc0000385-1510915933:7150..8591Clytia hemisphaericaexon
TCONS_00021350-exon-sc0000385-1491911889:15539..15831TCONS_00021350-exon-sc0000385-1491911889:15539..15831Clytia hemisphaericaexon
TCONS_00021350-exon-sc0000385-1491911889:11692..11801TCONS_00021350-exon-sc0000385-1491911889:11692..11801Clytia hemisphaericaexon
TCONS_00021350-exon-sc0000385-1491911889:10267..10537TCONS_00021350-exon-sc0000385-1491911889:10267..10537Clytia hemisphaericaexon
TCONS_00021350-exon-sc0000385-1491911889:9319..9565TCONS_00021350-exon-sc0000385-1491911889:9319..9565Clytia hemisphaericaexon
TCONS_00021350-exon-sc0000385-1491911889:9095..9151TCONS_00021350-exon-sc0000385-1491911889:9095..9151Clytia hemisphaericaexon
TCONS_00021350-exon-sc0000385-1491911889:8876..8920TCONS_00021350-exon-sc0000385-1491911889:8876..8920Clytia hemisphaericaexon
TCONS_00021350-exon-sc0000385-1491911889:7150..8591TCONS_00021350-exon-sc0000385-1491911889:7150..8591Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:7150..15831 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.3567 23.969 4.32679 2.5085 142.746 113.538 63.2021 63.8064 30.1482 35.7019 32.4864 24.2354 20.6876 21.5929 19.7257 24.5132 37.4468 35.151 12.0363 14.5629 33.6633 32.5058 57.6633 52.4672 44.1692 40.1131 23.8707 18.8477 39.7092 42.6447
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003316E2F_WHTH_DNA-bd_dom
IPR011991WHTH_DNA-bd_dom
IPR032198E2F_CC-MB
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0046983protein dimerization activity
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005667transcription factor complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
BLAST of TCONS_00021350 vs. Swiss-Prot (Human)
Match: E2F5 (Transcription factor E2F5 OS=Homo sapiens GN=E2F5 PE=1 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 3.092e-96
Identity = 183/312 (58.65%), Postives = 220/312 (70.51%), Query Frame = 3
Query:  201 ASRHEKSLGLLTTKFVTLLQEAKDGVLDLKVAADQLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGAGPGCNSSEVSAKLRDLKTELDRLDSIERILDEQKLWVQQSLKNVSEDPDNERHAYVSHDDICNCYQGETLLAIQAPSGTQLEVPPPEIQQGQRPKYQMHLNSSNGSICVLLVNHDTKSDTXXXXXXXXXDQXXXXXXXXXXXXXXXXXXXKKNVKSSTVIKEETIEER---LQNPMASGGQDPSLVESEQITELEDINLDNFCKDTDAFTPLLRLSPPPGDQDYYFNLDDSEGVCDLFDVPL 1127
            +SRHEKSLGLLTTKFV+LLQEAKDGVLDLK AAD LAVRQKRRIYDITNVLEGI LIEKKSKNSIQWKG G GCN+ EV  +LR LK E++ L+  ER LD+QKLW+QQS+KNV +D  N R +YV+H+DICNC+ G+TLLAIQAPSGTQLEVP PE+ Q  + KYQ++L S +G I VLL+N ++ S  PVV PVPPPD       T   S S T    +K+  ++  + E+ + ER   LQ   A+       +  + I EL           +D F PLLRLSP P D DY FNLDD+EGVCDLFDV +
Sbjct:   48 SSRHEKSLGLLTTKFVSLLQEAKDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEKKSKNSIQWKGVGAGCNTKEVIDRLRYLKAEIEDLELKERELDQQKLWLQQSIKNVMDDSINNRFSYVTHEDICNCFNGDTLLAIQAPSGTQLEVPIPEMGQNGQKKYQINLKSHSGPIHVLLINKESSSSKPVVFPVPPPDD-----LTQPSSQSLTPVTPQKSSMATQNLPEQHVSERSQALQQTSATDISSAGSISGDIIDEL---------MSSDVF-PLLRLSPTPAD-DYNFNLDDNEGVCDLFDVQI 343          
The following BLAST results are available for this feature:
BLAST of TCONS_00021350 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
E2F53.092e-9658.65Transcription factor E2F5 OS=Homo sapiens GN=E2F5 ... [more]
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