|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021362 ID=TCONS_00021362|Name=TCONS_00021362|organism=Clytia hemisphaerica|type=transcript|length=3328bp
ATGTTGGTGTTTAAAACCTCTAATAGCTTAACTCGAACTCTCATATTGTG
AACTACTTTTGCGGGTATCATGGCTGAGGTTCTACTATCACTTTTCTTGa
TACGCATGCGTAGTCGCACAGTGTCAGCAGATGACGATACACCAGGAGCA
AGTTCGTGGGCCAAAGAGAAATTGATGGAACAAAAACGTCTCATTAAACA
ACATGAAGATGAAATGgaagaattgaaaaagaagaataaagaaCAACAGG
ACAAGCTGGAGAAGAGTTACGAAAAGATCAATGAACTGATACAAATCAAC
ACTGAGAAAAGCGACAAAATTGAAACGTGTGAAAACGAGAAGACACAGAT
CATTCATGAAAGTGAAGACCTAAAAACTCAAATCATCCAACTTCGCCAAA
AGATAAGAACCATGCAAACTACCTTGGAGAATAAGGACAACACACTTAAC
ATGTGTCAGAAGATCTCTGAGGAAAAGGATGTGGCGATGGTTGATTTAAA
TCATATGTTTGAGAAAGAGCAAAAAGAGAAGATCGCCTTGGCTAGCCAGT
ATTCTTCTAAGCTAACTGATCAACAAGAGCTGAACAAGACTTTGCAACGT
GAAATTGAGTTATTAAAACAGGAGCTCGACCGACAGTTAGAGACTTCAAC
AAACGTGAAAAATGAGCTAGAACTAGAATTAAAAGCGGCTCAAGACAAAT
CACAAACATTGTTTGACGAGAGAAGTCAGTACGAAGAAGCATGTCAGAAA
TACGAATCGGAGATTTCGGAACGTATTCGAGAGAATCTCCATATAATGGA
GGACTATGATAAATCGAAAGTTGTTGAACACAAACAATTAAGCTTTATCA
ACGAACTTACAAAATCGAATCAAGATTTAACGACAACTTTACGGAAAATA
CAAACCGAGTTTGAAGAGATAAAGATCCAACTACAATTAACGAAATCAGA
AGTTGTGGAAGCCAGGGAACATCAACAAAGTGCTTTTCAACAACTCGAAG
ATGAGAAGAAAACAAACAGGGACCTGGAATCGAATCTACAAAATGGCGCG
AAAACAATCAACGAACAGGACCAACTAGCCAAGAAATTACAAAACGAGAT
TGACCGCTTGAAAGCGGAACTTGCTGAAACCACAGAGAATCTGCAAGAGA
TTACCAATAACCATCGAGAAGTTGAGGAGAGATTCACCAATCTTGAGAGT
GAGACAACGTCAAAGAGTTCTAAAGCGCAGGAAGAGCTAGATGATTTCGT
GCGGCGTGATCACGAACAAACAAACATGCTGAATAAACTTGTCAACGACC
TTGAAGATACTAAGCATGACAATGAACTTAAAACCGAGTTAGCTAAAAAT
CTTCAATCGGAGCTACAAGAGATTCAAGAGAGATCTCGATTCGATAATGA
AAACCAACTGAGAACcatacgtgatttggaaaaacAAGTTTTTGATTTCA
CCAATTCTGCCGAACAGCAAGCTGGCAAGATGAATAAATTGGAGATTGAG
AACCAGGACTTGAGCACTAAAATGATCCAATGCATCGAAAACATTGGATC
TTTGAAAATCGAGAATGGCAAATTGCAAAGTAACGTTACACAATTATCTG
ATGCAAATGAATTGCTTCAATCTCGTCTCGATGACCTAACTGTATCATTT
GAAGAGAAGGAGAACGAGTGTCAGGATTATCAAGACAAAATTGAACTTTT
GGAAGAATCTGGTTTGACACAGGATAATATTGTTGCTGACGTCACCGATC
AAAATGAATTTATGAACGCTCAAATACAGGATCTCGAGCAAGAGGTTAGT
CAACTTAAAATCAAGATCGGCACATGCGTAGAAAAACATTCGTCCGAACT
TACGCAGCTGCAAGACAACCACAAGCAAAACGTCAGCAAGCTGACCGAGG
AGCTGAACACCAATCGCCATAAATCACAAAGTGAAATCAACGAGCTGTTA
AATAACTTTAATGAGGTTGAAAATGAGTTGAGCTTTTGTCAAGACGAGCT
GGTTAACAAGACAAAGGAGTTAAATGACACACGTGACCAGCTTACGGAAA
TGTCTAACGCAGCGATCGCCAAAGAACAAAAACTATTAACAGATCTTGAG
ACACTCAACgaacaaaatgaaaacattctaCAAACTGAAATCcgtaaatt
caaaaaagaatgcGACGACAAAGTCATGATTCTGCAAAGTAACTATAATG
CGGAGATGATTAAATTGCAGAACGAATTTCAAGGGAACATGTCAgccatg
aaacaaaaacacgAGGCGGAAGTGAAGGAACATCAGGAACAAATGAGAAG
CAAGCTTGAGAATGAAGGTATGGTAGCTTCAGCTGAGAAAGAGAAACTAC
AAGAAAAATACACCAAGAAGTCTGCTGATTATGATCGAGTACGCACCGAG
TTGGACACCAAAATGAAAAGCAAAGATGTCGAGTTAACCTCCAAATCACG
AATTGTCAACCAACTTGGACGTCGTATCGAAACACAACAAAAACTCATCG
ATTATATGATGAAATCTTTGGAAGCTGAACGTACCAAAAACCATTCCTCT
AACAACGATGTCATGTTTATGTTAGCAAATTTGCAGTCCTCCCTTGATGA
CAAGTTACAACAAAACCCCCTTGCAGGAGAGATCTACCAATACCGGCAGT
CACTCTCCTCCGCTTCGTCTTTTCAAGATTTGAACCATTCATATCCACAA
CCTCTCACGAATTCTTCACCTAGGAGGGAGATGCACCACTCCACCACAGA
GCCTGTCTATTCACCGATACCTTCACCTACACCCTCACCCATGGTCGAAA
AATCACCCCACGATGATTTCAACCTCTATCTAAGAAGACAAGAGCACCCA
TCAACAAAACCGCACAACCAAACTTTCCCTTCATCCAAAACACAAGATTA
CCCTTTAAATACATCCTCTGAAGAATCAAAGCTCTCAAAATCTCTACCTG
CTGAGAATGTGTTTGTCGACCATGGTTACGTTTCACCGACCCTCCATAAC
AACAGCACCAAAACGGTGTATTTTGGTGAACAAATCCAAACCATTATGAA
GACATTCGAGAAATTAGAATCAATCAGTGAAACAGCTTCTCCAAACAAGG
AACTGAACATGGAAATTTGGAAACAGAAAATCCATTTCCGTTTGAAAGTC
TTGGAAGACCAAATGGATGAGATCGATGATCAATCTGTCACTTCATCCAA
TAGCAATGCTTCAGATTCAGCTTTTGATAAACCCAATCCATTACACGACC
AACCTGAAGTTGTGTTCCATCCGTCCACGCGAGAGATTCGTGAACTGATT
GAGAATGTAAACAGACGTTATAAGAGAC Run BLAST on NCBI transcript from alignment at sc0000385:124351..129043- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021362 ID=TCONS_00021362|Name=TCONS_00021362|organism=Clytia hemisphaerica|type=transcript|length=4693bp|location=Sequence derived from alignment at sc0000385:124351..129043- (Clytia hemisphaerica)
ATGTTGGTGTTTAAAACCTCTAATAGCTTAACTCGAACTCTCATATTGTG
AACTACTTTTGCGGGTATCATGGCTGAGGTTCTACTATCACTTTTCTTGG
TACGTAAACTTGATGATATTGTACTGCTTTCAATCGCAGGAATTTTTTTT
TTTGGAAAAATAGTAGAAATGTAAAATGCATACCTCAGATTCACACTGTC
GTTCGGTTAAGAGAAAGAATGAAGACATTTGATCTATTTATTCGGAAAGA
GCATTTGTCACGCTGGTCTGGAAGCTTATTTATTGTTTTAACTTTTTGCT
AGCTTTTTCCTTTGTTATTATCAAAAGATGAAAATGGATTTGCTCAGTTT
TTGACCATGTTACCGAGTATTCCTCTTGGGATTGGTTTAAGATATGATCA
CGTGATCAAGAAGTGAGCAAAGCAAATTAATTTCTCAAACGCAGGTTCAA
GTAAGAAACAATGGAAAGAAACAAAAGACTTCCAGATCGGTATTTTTTAT
ACGAACTATGGAAAGAGAGACAAACTTAATCCAACGCAAGCTAAGATCAA
TAAAAGAATTGCCATACATCATTTTAAACCTATTTCGCTTTCCATAACAT
CAAAATATTTCAATTTCAGATACGCATGCGTAGTCGCACAGTGTCAGCAG
ATGACGATACACCAGGAGCAAGTTCGTGGGCCAAAGAGAAATTGATGGAA
CAAAAACGTCTCATTAAACAACATGAAGATGAAATGGAAGAATTGAAAAA
GAAGAATAAAGAACAACAGGTTTGTGTTCTATTTCTATTTAGTTATTTTG
TGTTCTACCATCGATTTGTTTATTTACCCTTTAATTAGTCCTTAGTCCTT
TTCCATCTGTTTATTGTCAAATGCTAGTTTGAGAACTTTTTGTACAGGGT
TCTGGCCAGAACTTTCTTTTATAAAGAATCAATAAATTTTCTCTTGAGCC
TTGGCTGTTTTACTTTCTTTGGCAACTTCATAGGACGAAGTGAGTTACTT
TAGGCTTTGTACCCGTTTCTTATCACTTTAACCCTTGAATTGGTTATGAT
TTTGACATTCATTCCAATCTTAGAATTTGTTCTTAAATCGTTCTTACTTT
TTGACGATTTTCTTATAAAATTATTTTTATAAAAAAAGATTGTAGAGCAG
TATTTTGATTCGCAAACATTTATAGATATATTTCCTATGTTAAATATACA
AAAGGTTTTTGTTAGGAGATGAGCAGAAGCCTATAGAGAAGATAACCTCA
ACGAACAAGGCTTAACTGTATATCCTCTAACGAGAAAGTTCCTCATGATG
ATATAGGAAGTATATCCATAGAGGTCCGCGAATCAGACTACGACGAACTA
AATCTCGAAAATGCACGGTGCGTGCAAGGGCACAACTCAAATATTAGCTT
CGGTTTTCAATAATATTCTTCTGAAATTCTCTTCAGAACCCTTATATTGT
TCAATTTTCCTTCATTGCAACCTTCCAAAGACGTTATTTGTTCCAAATTG
AAAAATATAGATTGTTTATCTTTGTAGGACAAGCTGGAGAAGAGTTACGA
AAAGATCAATGAACTGATACAAATCAACACTGAGAAAAGCGACAAAATTG
AAACGTGTGAAAACGAGAAGACACAGATCATTCATGAAAGTGAAGACCTA
AAAACTCAAATCATCCAACTTCGCCAAAAGATAAGAACCATGCAAACTAC
CTTGGAGAATAAGGACAACACACTTAACATGTGTCAGAAGATCTCTGAGG
AAAAGGATGTGGCGATGGTTGATTTAAATCATATGTTTGAGAAAGAGCAA
AAAGAGAAGATCGCCTTGGCTAGCCAGTATTCTTCTAAGCTAACTGATCA
ACAAGAGCTGAACAAGACTTTGCAACGTGAAATTGAGTTATTAAAACAGG
AGCTCGACCGACAGTTAGAGACTTCAACAAACGTGAAAAATGAGCTAGAA
CTAGAATTAAAAGCGGCTCAAGACAAATCACAAACATTGTTTGACGAGAG
AAGTCAGTACGAAGAAGCATGTCAGAAATACGAATCGGAGATTTCGGAAC
GTATTCGAGAGAATCTCCATATAATGGAGGACTATGATAAATCGAAAGTT
GTTGAACACAAACAATTAAGCTTTATCAACGAACTTACAAAATCGAATCA
AGATTTAACGACAACTTTACGGAAAATACAAACCGAGTTTGAAGAGATAA
AGATCCAACTACAATTAACGAAATCAGAAGTTGTGGAAGCCAGGGAACAT
CAACAAAGTGCTTTTCAACAACTCGAAGATGAGAAGAAAACAAACAGGGA
CCTGGAATCGAATCTACAAAATGGCGCGAAAACAATCAACGAACAGGACC
AACTAGCCAAGAAATTACAAAACGAGATTGACCGCTTGAAAGCGGAACTT
GCTGAAACCACAGAGAATCTGCAAGAGATTACCAATAACCATCGAGAAGT
TGAGGAGAGATTCACCAATCTTGAGAGTGAGACAACGTCAAAGAGTTCTA
AAGCGCAGGAAGAGCTAGATGATTTCGTGCGGCGTGATCACGAACAAACA
AACATGCTGAATAAACTTGTCAACGACCTTGAAGATACTAAGCATGACAA
TGAACTTAAAACCGAGTTAGCTAAAAATCTTCAATCGGAGCTACAAGAGA
TTCAAGAGAGATCTCGATTCGATAATGAAAACCAACTGAGAACCATACGT
GATTTGGAAAAACAAGTTTTTGATTTCACCAATTCTGCCGAACAGCAAGC
TGGCAAGATGAATAAATTGGAGATTGAGAACCAGGACTTGAGCACTAAAA
TGATCCAATGCATCGAAAACATTGGATCTTTGAAAATCGAGAATGGCAAA
TTGCAAAGTAACGTTACACAATTATCTGATGCAAATGAATTGCTTCAATC
TCGTCTCGATGACCTAACTGTATCATTTGAAGAGAAGGAGAACGAGTGTC
AGGATTATCAAGACAAAATTGAACTTTTGGAAGAATCTGGTTTGACACAG
GATAATATTGTTGCTGACGTCACCGATCAAAATGAATTTATGAACGCTCA
AATACAGGATCTCGAGCAAGAGGTTAGTCAACTTAAAATCAAGATCGGCA
CATGCGTAGAAAAACATTCGTCCGAACTTACGCAGCTGCAAGACAACCAC
AAGCAAAACGTCAGCAAGCTGACCGAGGAGCTGAACACCAATCGCCATAA
ATCACAAAGTGAAATCAACGAGCTGTTAAATAACTTTAATGAGGTTGAAA
ATGAGTTGAGCTTTTGTCAAGACGAGCTGGTTAACAAGACAAAGGAGTTA
AATGACACACGTGACCAGCTTACGGAAATGTCTAACGCAGCGATCGCCAA
AGAACAAAAACTATTAACAGATCTTGAGACACTCAACGAACAAAATGAAA
ACATTCTACAAACTGAAATCCGTAAATTCAAAAAAGAATGCGACGACAAA
GTCATGATTCTGCAAAGTAACTATAATGCGGAGATGATTAAATTGCAGAA
CGAATTTCAAGGGAACATGTCAGCCATGAAACAAAAACACGAGGCGGAAG
TGAAGGAACATCAGGAACAAATGAGAAGCAAGCTTGAGAATGAAGGTATG
GTAGCTTCAGCTGAGAAAGAGAAACTACAAGAAAAATACACCAAGAAGTC
TGCTGATTATGATCGAGTACGCACCGAGTTGGACACCAAAATGAAAAGCA
AAGATGTCGAGTTAACCTCCAAATCACGAATTGTCAACCAACTTGGACGT
CGTATCGAAACACAACAAAAACTCATCGATTATATGATGAAATCTTTGGA
AGCTGAACGTACCAAAAACCATTCCTCTAACAACGATGTCATGTTTATGT
TAGCAAATTTGCAGTCCTCCCTTGATGACAAGTTACAACAAAACCCCCTT
GCAGGAGAGATCTACCAATACCGGCAGTCACTCTCCTCCGCTTCGTCTTT
TCAAGATTTGAACCATTCATATCCACAACCTCTCACGAATTCTTCACCTA
GGAGGGAGATGCACCACTCCACCACAGAGCCTGTCTATTCACCGATACCT
TCACCTACACCCTCACCCATGGTCGAAAAATCACCCCACGATGATTTCAA
CCTCTATCTAAGAAGACAAGAGCACCCATCAACAAAACCGCACAACCAAA
CTTTCCCTTCATCTAAAACACAAGATCNATTCAACCTCTATCTACGGCGA
CAAGAGCAGTATCCATCAACAAAACTGCTCAATCAAACCTTTCCAACATC
CAAAACACAAGATTACCCTTTAAATACATCCTCTGAAGAATCAAAGCTCT
CAAAATCTCTACCTGCTGAGAATGTGTTTGTCGACCATGGTTACGTTTCA
CCGACCCTCCATAACAACAGCACCAAAACGGTGTATTTTGGTGAACAAAT
CCAAACCATTATGAAGACATTCGAGAAATTAGAATCAATCAGTGAAACAG
CTTCTCCAAACAAGGAACTGAACATGGAAATTTGGAAACAGAAAATCCAT
TTCCGTTTGAAAGTCTTGGAAGACCAAATGGATGAGATCGATGATCAATC
TGTCACTTCATCCAATAGCAATGCTTCAGATTCAGCTTTTGATAAACCCA
ATCCATTACACGACCAACCTGAAGTTGTGTTCCATCCGTCCACGCGAGAG
ATTCGTGAACTGATTGAGAATGTAAACAGACGTTATAAGAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021362-exon-sc0000385-1575043694:128945..129043 | TCONS_00021362-exon-sc0000385-1575043694:128945..129043 | Clytia hemisphaerica | exon |
| TCONS_00021362-exon-sc0000385-1575043694:128275..128424 | TCONS_00021362-exon-sc0000385-1575043694:128275..128424 | Clytia hemisphaerica | exon |
| TCONS_00021362-exon-sc0000385-1575043694:124884..127516 | TCONS_00021362-exon-sc0000385-1575043694:124884..127516 | Clytia hemisphaerica | exon |
| TCONS_00021362-exon-sc0000385-1575043694:124351..124796 | TCONS_00021362-exon-sc0000385-1575043694:124351..124796 | Clytia hemisphaerica | exon |
| TCONS_00021362-exon-sc0000385-1510915933:128945..129043 | TCONS_00021362-exon-sc0000385-1510915933:128945..129043 | Clytia hemisphaerica | exon |
| TCONS_00021362-exon-sc0000385-1510915933:128275..128424 | TCONS_00021362-exon-sc0000385-1510915933:128275..128424 | Clytia hemisphaerica | exon |
| TCONS_00021362-exon-sc0000385-1510915933:124884..127516 | TCONS_00021362-exon-sc0000385-1510915933:124884..127516 | Clytia hemisphaerica | exon |
| TCONS_00021362-exon-sc0000385-1510915933:124351..124796 | TCONS_00021362-exon-sc0000385-1510915933:124351..124796 | Clytia hemisphaerica | exon |
| TCONS_00021362-exon-sc0000385-1491911889:128945..129043 | TCONS_00021362-exon-sc0000385-1491911889:128945..129043 | Clytia hemisphaerica | exon |
| TCONS_00021362-exon-sc0000385-1491911889:128275..128424 | TCONS_00021362-exon-sc0000385-1491911889:128275..128424 | Clytia hemisphaerica | exon |
| TCONS_00021362-exon-sc0000385-1491911889:124884..127516 | TCONS_00021362-exon-sc0000385-1491911889:124884..127516 | Clytia hemisphaerica | exon |
| TCONS_00021362-exon-sc0000385-1491911889:124351..124796 | TCONS_00021362-exon-sc0000385-1491911889:124351..124796 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000385 | supercontig | sc0000385:124351..129043 - |
Blast
The following BLAST results are available for this feature:
|
