|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021368 ID=TCONS_00021368|Name=TCONS_00021368|organism=Clytia hemisphaerica|type=transcript|length=431bp
CGCCGAGCCCCGAGCCAGTCTTGCCAGTCTGCCAGTCAGGGGGCAGTCAG
GCAGGATCTCGACTCTTCAACAAAcatcaaactgaactcaaaaatatTTC
CATGATAAGGATGTCCCAGTTAAACCAAATAATGTAAAGGTTACTCCTAc
cATACTAACACGGTTCACTGGAAATCCGACACCAACAACGAATACTATGA
GCAAAAGGTTTGGTTGGCTTTTCCAGGCTCGCCCACCATTGCTCCCACCC
CATCGTCACCTACCTTATCCTCCACCACCACTTCGTCACTTAGCTTCTCC
TCTACCACCATTAACTCATATTAACTCATACACCTTTGTAAATAATTATA
ATAATATAggcattttaatttcaaataccacttttgataatttttgaaaa
aagaaagtattatcTAACTTCTGAACGAATA Run BLAST on NCBI transcript from alignment at sc0000385:170597..173743- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021368 ID=TCONS_00021368|Name=TCONS_00021368|organism=Clytia hemisphaerica|type=transcript|length=3147bp|location=Sequence derived from alignment at sc0000385:170597..173743- (Clytia hemisphaerica)
CGCCGAGCCCCGAGCCAGTCTTGCCAGTCTGCCAGTCAGGGGGCAGTCAG
GCAGGATCTCGACTCTTCAACAAACATCAAACTGAACTCAAAAATATTTC
CATGATAAGGATGTCCCAGTTAAACCAAATAATGTAAAGGTTACTCCTAG
TAAGCATTTTCTGTTTTTTTTTTGTTAGAAATTTAATAGATTTTTAAGAT
TTCAATATCCTGCTGAAAGATACAAGCAGTACAAGCCCTAAGACCAGTAA
GACCCAAATGTCTTCAGCCTCACACTGAAATTTGGCCAAATGATCTTTAT
CATACAAGAAAATAAGACCCTGAAAATTTCACCTTGATTTCTCAAGCAAT
TTTTATGATGTAGTCTAAGTCAAAGTTTTGCACCCTCCGAGACATGTCCA
AAATTTTTTCAAACCCCCCCTAAGAAAAAATCTTAGATACCCCCTCTCCC
CCTCATGCAATCCTTGCCTTGTTCATAAGTTAGATGGAAGTTGCTGAAAT
ATGAAATTGGATTTCAAACATCGCTTCCTTAACTTTACAATCTCATTTAT
ATATCCTTGAACTTTTGTGCGTTCTTTTTGGGAAATTTTATCGATGTGAG
AGTTATATATTCATGATATGCACCATTGCAATGTCTTCTGTTCCACCCAA
TAGCTGATTGGTTGAAAGTGACGTATTGACTGTTTTTACATCAATTCCCA
CCAATGAGCTATTGGTTCCGTGATGTAATGTCAGAAGACATTGCAGTGGT
GCATATCATGAATAACTGAGGCGCAACTGGTTTGTGCAGACAGAAAACAT
TTTAAATTTTTAACCCTCTCATTTAGCTAAAACCTGTAAATTTATGTTCT
CACAATGATTTAAAAAAGACTTCATTTTTGAATCATTCTAATGGGGATGT
CAAGCCCCCCTGCCCTTTGGATGGCAAAAAAATTTCGAATCCCCCCTCCT
TAAATCTACTGCCCCCTCTAGTAGATACTTTATAACTACTCCCTAATCTT
AAACTCCTATATCAATATTAGAAACTAGGCATTATTTTATTTTTATGTAC
AGAATGACTGTTAGCCAATCTTGGGGATTTGTGTTTGTGAAACTCAAAAT
TGATTTAGCAGGTTTCATGGGCTCTTAAAATTGAAAACACTAAAGGCTCG
TTTCCATTCACATAGCGGGCAGTGCGCTGCGACCAAAATTTCCTGAAATA
GCTCAATGACGTCAGAAAATGTAAATATTTGTACACAAAGTTAGAGCTCT
TTCGAGCTCTGCTGTGCAATTTTGTGCAATTTTGGTAGCTGAAAAATTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNACTCTAAAAGGCGGACACCTCTGA
TTAGCGGACAATTTCATTTTCCCCGGCTGTTTCCTAGTCAAATCCTCATA
AAAAAGTTTCTAAAAGGCGGACACTCAATAAGCGGACCCTCTGATTAGCG
GACAAATTTTTTCGCACGAAATGGCTAAAACCTATTTTAGCTCTCCAATT
AGCGGACATTGAATATCAAACGGGTCACAGACGTCCAAAATCGAAATAAA
AATTTTTAGATATCTTTATTTCAAGCACTTACTAGTCTTATTATTCAAAT
TATTTCTACAAATTTCCAGTTTTCCCTTGACCCATTCAACGAATTTAGGT
GGGCCAAAGAAATCATAAATCACTGATTTTCTTTTATTTGTTAAAAACTA
AATTGTTGCGTTTTAATAAACCTTTCTCTTGTTCTTTTATGGCCTAGTGT
CTGCAGATAAGTACTTTAGACCCCAATTTTGTATTTTCGACACCCTGGGA
TGGCCTAATTTCAAAATTGGAGCTCCAAGATGAAAAGTTTCTAAAAGGCG
GACACTTCTAATTAGCGGACACTAACCCTTTTCCCGCTAATTAGAGGTTC
CACTGTACATATTGTGATTAACTCTTTTGAATATTTCGAGCACTTCTTTT
AAATCTCAAGATTAATGGAAATCAATCACTGGTCGCTAGTCCGTTGCGAC
CACTTTTATATTTAGAATTCTGGTCGCAGCGCACTGCCGCTAGGTGAATG
GAAACAAGCCTTAAATTAAACTGACAATATGATGGGGGATAAACGTTTTT
TGATACACCCCTAAAATAGGGCCAAAAATCATCTCTAGTGTAATCGCGGT
GGAGGAGTTCTGATAACCTTGAAATTAAAATGCTGTGAAATGAGTTTTCA
AAGGAGTTACCACTCCAATAAGGTATTCACTAGTCAATATGGATGATATC
AGGATAGAATATAAGGCTATAAAAAAATTGCTTGAATATCAAATTTAGGA
TTGAAATCTTAAAAATTAAATACAATAGAAGGCTTGAGCCAACTTATGTG
TTTTTTAAAAAATGTGTACTTTCTCCGGACATTTAAAGTTTGTATAAAAA
TTTTTTTTCTAGCCATACTAACACGGTTCACTGGAAATCCGACACCAACA
ACGAATACTATGAGCAAAAGGGTAAATTAAATTTCTAATTACATTTAATG
TATTCTAGATCCTACCCTGTATCTAGCACAGATTGCCGCATATCAAAAGG
ATGAACATTTTTAACGGAAAAGGTCAAAATTCTGTACACGTCTAAATAGT
TGATATATCTTGTTGATAGTTTAGAAAGTTCACGCTCAAAATATTTCTTT
TTTGTTATCGTCTGAAACATTTTGTCAATCAATACTCTCTTTTTTCAGTT
TTCATGATAAATTATCATTTGTAGTTTGGTTGGCTTTTCCAGGCTCGCCC
ACCATTGCTCCCACCCCATCGTCACCTACCTTATCCTCCACCACCACTTC
GTCACTTAGCTTCTCCTCTACCACCATTAACTCATATTAACTCATACACC
TTTGTAAATAATTATAATAATATAGGCATTTTAATTTCAAATACCACTTT
TGATAATTTTTGAAAAAAGAAAGTATTATCTAACTTCTGAACGAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021368-exon-sc0000385-1575043694:173595..173743 | TCONS_00021368-exon-sc0000385-1575043694:173595..173743 | Clytia hemisphaerica | exon |
| TCONS_00021368-exon-sc0000385-1575043694:171073..171131 | TCONS_00021368-exon-sc0000385-1575043694:171073..171131 | Clytia hemisphaerica | exon |
| TCONS_00021368-exon-sc0000385-1575043694:170597..170819 | TCONS_00021368-exon-sc0000385-1575043694:170597..170819 | Clytia hemisphaerica | exon |
| TCONS_00021368-exon-sc0000385-1510915933:173595..173743 | TCONS_00021368-exon-sc0000385-1510915933:173595..173743 | Clytia hemisphaerica | exon |
| TCONS_00021368-exon-sc0000385-1510915933:171073..171131 | TCONS_00021368-exon-sc0000385-1510915933:171073..171131 | Clytia hemisphaerica | exon |
| TCONS_00021368-exon-sc0000385-1510915933:170597..170819 | TCONS_00021368-exon-sc0000385-1510915933:170597..170819 | Clytia hemisphaerica | exon |
| TCONS_00021368-exon-sc0000385-1491911889:173595..173743 | TCONS_00021368-exon-sc0000385-1491911889:173595..173743 | Clytia hemisphaerica | exon |
| TCONS_00021368-exon-sc0000385-1491911889:171073..171131 | TCONS_00021368-exon-sc0000385-1491911889:171073..171131 | Clytia hemisphaerica | exon |
| TCONS_00021368-exon-sc0000385-1491911889:170597..170819 | TCONS_00021368-exon-sc0000385-1491911889:170597..170819 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000385 | supercontig | sc0000385:170597..173743 - |
Blast
The following BLAST results are available for this feature:
|
