|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021370 ID=TCONS_00021370|Name=TCONS_00021370|organism=Clytia hemisphaerica|type=transcript|length=527bp
GCTATTGGCGGAAAAATGTATGAAGCCCGCAAAAATTCTGATTAGCGATT
GGCtcgaataaatttgaaaaaaaactttctttcacGTGGGTTGTCGTGAA
CTGTGAACTGATGTCGCCGAGCCCCGAGCCAGTCTTGCCAGTCTGCCAGT
CAGGGGGCAGTCAGGCAGGATCTCGACTCTTCAACAAAcatcaaactgaa
ctcaaaaatatTTCCATGATAAGGATGTCCCAGTTAAACCAAATAATGTA
AAGGTTACTCCTAccATACTAACACGGTTCACTGGAAATCCGACACCAAC
AACGAATACTATGAGCAAAAGGGCTCGCCCACCATTGCTCCCACCCCATC
GTCACCTACCTTATCCTCCACCACCACTTCGTCACTTAGCTTCTCCTCTA
CCACCATTAACTCATATTAACTCATACACCTTTGTAAATAATTATAATAA
TATAggcattttaatttcaaataccacttttgataatttttgaaaaaaga
aagtattatcTAACTTCTGAACGAATA Run BLAST on NCBI transcript from alignment at sc0000385:170597..173857- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021370 ID=TCONS_00021370|Name=TCONS_00021370|organism=Clytia hemisphaerica|type=transcript|length=3261bp|location=Sequence derived from alignment at sc0000385:170597..173857- (Clytia hemisphaerica)
GCTATTGGCGGAAAAATGTATGAAGCCCGCAAAAATTCTGATTAGCGATT
GGCTCGAATAAATTTGAAAAAAAACTTTCTTTCACGTGGGTTGTCGTGAA
CTGTGAACTGATGTCGCCGAGCCCCGAGCCAGTCTTGCCAGTCTGCCAGT
CAGGGGGCAGTCAGGCAGGATCTCGACTCTTCAACAAACATCAAACTGAA
CTCAAAAATATTTCCATGATAAGGATGTCCCAGTTAAACCAAATAATGTA
AAGGTTACTCCTAGTAAGCATTTTCTGTTTTTTTTTTGTTAGAAATTTAA
TAGATTTTTAAGATTTCAATATCCTGCTGAAAGATACAAGCAGTACAAGC
CCTAAGACCAGTAAGACCCAAATGTCTTCAGCCTCACACTGAAATTTGGC
CAAATGATCTTTATCATACAAGAAAATAAGACCCTGAAAATTTCACCTTG
ATTTCTCAAGCAATTTTTATGATGTAGTCTAAGTCAAAGTTTTGCACCCT
CCGAGACATGTCCAAAATTTTTTCAAACCCCCCCTAAGAAAAAATCTTAG
ATACCCCCTCTCCCCCTCATGCAATCCTTGCCTTGTTCATAAGTTAGATG
GAAGTTGCTGAAATATGAAATTGGATTTCAAACATCGCTTCCTTAACTTT
ACAATCTCATTTATATATCCTTGAACTTTTGTGCGTTCTTTTTGGGAAAT
TTTATCGATGTGAGAGTTATATATTCATGATATGCACCATTGCAATGTCT
TCTGTTCCACCCAATAGCTGATTGGTTGAAAGTGACGTATTGACTGTTTT
TACATCAATTCCCACCAATGAGCTATTGGTTCCGTGATGTAATGTCAGAA
GACATTGCAGTGGTGCATATCATGAATAACTGAGGCGCAACTGGTTTGTG
CAGACAGAAAACATTTTAAATTTTTAACCCTCTCATTTAGCTAAAACCTG
TAAATTTATGTTCTCACAATGATTTAAAAAAGACTTCATTTTTGAATCAT
TCTAATGGGGATGTCAAGCCCCCCTGCCCTTTGGATGGCAAAAAAATTTC
GAATCCCCCCTCCTTAAATCTACTGCCCCCTCTAGTAGATACTTTATAAC
TACTCCCTAATCTTAAACTCCTATATCAATATTAGAAACTAGGCATTATT
TTATTTTTATGTACAGAATGACTGTTAGCCAATCTTGGGGATTTGTGTTT
GTGAAACTCAAAATTGATTTAGCAGGTTTCATGGGCTCTTAAAATTGAAA
ACACTAAAGGCTCGTTTCCATTCACATAGCGGGCAGTGCGCTGCGACCAA
AATTTCCTGAAATAGCTCAATGACGTCAGAAAATGTAAATATTTGTACAC
AAAGTTAGAGCTCTTTCGAGCTCTGCTGTGCAATTTTGTGCAATTTTGGT
AGCTGAAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCTAAAAG
GCGGACACCTCTGATTAGCGGACAATTTCATTTTCCCCGGCTGTTTCCTA
GTCAAATCCTCATAAAAAAGTTTCTAAAAGGCGGACACTCAATAAGCGGA
CCCTCTGATTAGCGGACAAATTTTTTCGCACGAAATGGCTAAAACCTATT
TTAGCTCTCCAATTAGCGGACATTGAATATCAAACGGGTCACAGACGTCC
AAAATCGAAATAAAAATTTTTAGATATCTTTATTTCAAGCACTTACTAGT
CTTATTATTCAAATTATTTCTACAAATTTCCAGTTTTCCCTTGACCCATT
CAACGAATTTAGGTGGGCCAAAGAAATCATAAATCACTGATTTTCTTTTA
TTTGTTAAAAACTAAATTGTTGCGTTTTAATAAACCTTTCTCTTGTTCTT
TTATGGCCTAGTGTCTGCAGATAAGTACTTTAGACCCCAATTTTGTATTT
TCGACACCCTGGGATGGCCTAATTTCAAAATTGGAGCTCCAAGATGAAAA
GTTTCTAAAAGGCGGACACTTCTAATTAGCGGACACTAACCCTTTTCCCG
CTAATTAGAGGTTCCACTGTACATATTGTGATTAACTCTTTTGAATATTT
CGAGCACTTCTTTTAAATCTCAAGATTAATGGAAATCAATCACTGGTCGC
TAGTCCGTTGCGACCACTTTTATATTTAGAATTCTGGTCGCAGCGCACTG
CCGCTAGGTGAATGGAAACAAGCCTTAAATTAAACTGACAATATGATGGG
GGATAAACGTTTTTTGATACACCCCTAAAATAGGGCCAAAAATCATCTCT
AGTGTAATCGCGGTGGAGGAGTTCTGATAACCTTGAAATTAAAATGCTGT
GAAATGAGTTTTCAAAGGAGTTACCACTCCAATAAGGTATTCACTAGTCA
ATATGGATGATATCAGGATAGAATATAAGGCTATAAAAAAATTGCTTGAA
TATCAAATTTAGGATTGAAATCTTAAAAATTAAATACAATAGAAGGCTTG
AGCCAACTTATGTGTTTTTTAAAAAATGTGTACTTTCTCCGGACATTTAA
AGTTTGTATAAAAATTTTTTTTCTAGCCATACTAACACGGTTCACTGGAA
ATCCGACACCAACAACGAATACTATGAGCAAAAGGGTAAATTAAATTTCT
AATTACATTTAATGTATTCTAGATCCTACCCTGTATCTAGCACAGATTGC
CGCATATCAAAAGGATGAACATTTTTAACGGAAAAGGTCAAAATTCTGTA
CACGTCTAAATAGTTGATATATCTTGTTGATAGTTTAGAAAGTTCACGCT
CAAAATATTTCTTTTTTGTTATCGTCTGAAACATTTTGTCAATCAATACT
CTCTTTTTTCAGTTTTCATGATAAATTATCATTTGTAGTTTGGTTGGCTT
TTCCAGGCTCGCCCACCATTGCTCCCACCCCATCGTCACCTACCTTATCC
TCCACCACCACTTCGTCACTTAGCTTCTCCTCTACCACCATTAACTCATA
TTAACTCATACACCTTTGTAAATAATTATAATAATATAGGCATTTTAATT
TCAAATACCACTTTTGATAATTTTTGAAAAAAGAAAGTATTATCTAACTT
CTGAACGAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021370-exon-sc0000385-1575043694:173595..173857 | TCONS_00021370-exon-sc0000385-1575043694:173595..173857 | Clytia hemisphaerica | exon |
| TCONS_00021370-exon-sc0000385-1575043694:171073..171131 | TCONS_00021370-exon-sc0000385-1575043694:171073..171131 | Clytia hemisphaerica | exon |
| TCONS_00021370-exon-sc0000385-1575043694:170597..170801 | TCONS_00021370-exon-sc0000385-1575043694:170597..170801 | Clytia hemisphaerica | exon |
| TCONS_00021370-exon-sc0000385-1510915933:173595..173857 | TCONS_00021370-exon-sc0000385-1510915933:173595..173857 | Clytia hemisphaerica | exon |
| TCONS_00021370-exon-sc0000385-1510915933:171073..171131 | TCONS_00021370-exon-sc0000385-1510915933:171073..171131 | Clytia hemisphaerica | exon |
| TCONS_00021370-exon-sc0000385-1510915933:170597..170801 | TCONS_00021370-exon-sc0000385-1510915933:170597..170801 | Clytia hemisphaerica | exon |
| TCONS_00021370-exon-sc0000385-1491911889:173595..173857 | TCONS_00021370-exon-sc0000385-1491911889:173595..173857 | Clytia hemisphaerica | exon |
| TCONS_00021370-exon-sc0000385-1491911889:171073..171131 | TCONS_00021370-exon-sc0000385-1491911889:171073..171131 | Clytia hemisphaerica | exon |
| TCONS_00021370-exon-sc0000385-1491911889:170597..170801 | TCONS_00021370-exon-sc0000385-1491911889:170597..170801 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000385 | supercontig | sc0000385:170597..173857 - |
Blast
The following BLAST results are available for this feature:
|
