TCONS_00021372 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021372
Unique NameTCONS_00021372
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2439

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021372 ID=TCONS_00021372|Name=TCONS_00021372|organism=Clytia hemisphaerica|type=transcript|length=2439bp
taaaaaaaacgtcaaaaatcaTTAACGAAGGACGGTTGCATTTCAACACA
ATTTCAATTtgttggaaatatttcactaaaGCAGAAGCGCACGTAATTCA
TGATGTGGGAGGATCCGAAAAAGTTCCTGAAAAAGAAGAACCCGCAACAA
GGTGTTCGTCGTTATCGACGAGCGAGTGAAAATCCAATGGAAGCACTTCA
GATTGTGCTCAAACAATACCGAAACAGTCCTCCACAGTCAGAAGCAGATG
GACATAACCTATCCAATAATGAGCAGTCACCAGAATCATCACCCCAACGC
CAAGCAAGTAACAATGGCTCAAATCTTGATCAAAGCGATGCACCACAGCA
AAATATGCCGAATCCTAACCAGCTAGCCAAGTGTCTCCAAGATTTGACCA
ACGAGTCTGCAGGTATTCACTCCAATGTTGAATGCCAAATGATTGAAGTG
TTGCCGTCAGGTCAGCCCAGATTAACCATCTTAGAGGACGTCTCTTCAAT
CCGGACACGCCACAACATGGGGCTGGGTCCGCTCATGCTTATTGAGCAGA
TGAGAAACACTTGTAAACCATCTACCGATATTGTACGACCAAGCCTGCGA
CGTTCACGATTAAAGGCGACAGATAAGTCGTTTTTAAGGCCATTGGCTTT
AGAGGAGGGAGCAGAAAAGGGGAAACCACTCCGTCACAAGAAGGGAGATG
TCCCATGGGGCGTCCGAATGAGGCGTTGGCGCCCTTGCGATGATGGCGTC
AGCCAAGATGAACGATCGATGGAATTACTTGAACACGTTGAGGaagacaa
attttataagatgACAGGATCATCTAAAAGTGTTGAAAACACTAACTCTC
ATACCCATTCAGTCTTTCAAACAGATGAAGACACTTTTTCAATGCCACCT
AAAGACCAAAAAATAGAAGATTCTCCATCTCCACCACGGGGAGAGCAAAC
ACCATCTATGGTGCTGGACACTGAAGGTGTTCATCAAACAGTTAGCGAAC
AAGAACTATGTATTGGAGATTCCCTGCTTGGGGCTGTAGGTTACGATCGA
CCAAAGCTCGATACTTCGTCACAGGCAATTGAGGGAAGAAGTGAGCTCTT
TAAAGGTGATTCACCATCAGCTAACATCAAAGTTGCTTCTTTTGGCGATA
TAAACACATCACCAGAAGTACACACACAAAGATTCTCAGCTCCGGTTCTA
AACACCGTTCGTTATGACGATATCTTGAGTCCTGAAGTATTTGAAAAGCA
CAACAAAGATGTTAAATTAAAACGAAAACAGAGCAAGACCAAAGCTACGA
GAGCCAATATGTCAGCAAGCAAAGAATCGTTCAAGAAAAAGTTACCATCA
GATATGTTTATTGCTCACAAAGATGAAACAGAATCTGCAGTATCATTGAC
GTGGCATTCCGGTAGAAGTTCATCCGGCAACTTGACTTTGTCCAATAAGT
CATTAAAGATTTCCGCAATTGAAGCCGAAAAACAATCCATCTTTGAAGGA
ATAAAATCAAGAGGTTTATACGCCGCTTACCAAGCATGCATGTCAGAATT
CGAATTTGAGATGGATAAAGAAGTTGATCAAGGACAAGCGAACGGCACCG
AGGAGCCTGAAACCGAGAGAGAAAGAGGTCCAGTGATTACATATGACCTC
GAAAACGAagtagaagaagaagaaggagagtATGTTGTGTCTCGTTGGGT
TAGGAGCGAAGACGCCGTGACCGAACAATTGATTATCCCAGACACTCATT
GGGTTAGGAACGAAGATTGCACCGAGACCCAAACATCTGAGGTTCCAGTT
GTTAATGAAGTGGAAGATATCCAAATCGTCAATCAAGAACAAGAAAGAAG
CATCGATGAATCAAAACGTGAAAGTTGTTCTATTGCACTATACAATGAGC
GGTTGACAAAGatcATGAAGGCCATTACGAAAGTTCATCAAGAGCAGTGC
GGTCATTTCACTGAATTAGATTGCGAACATCGTGTTGGCATGTCTCccat
caatgacgtcatcaacgaAAATAGAAGGAGCACAGTTATGAGTAGAGTTT
CAGCTTTTATTCAACGACGAACAAAGCTTCGAAGAATGCGAAACAGAGTA
AAGAGAGTGTGGAAAGCAATAAAGAAACCTGCTGTATGGTGCATTGGTGG
TAGAAAAACCAATACCAACCACAATGTTGCAGCCCAAGTATTCCAAGTTG
AATTTGTTGATGATGACCAAAtgtaaaaaatgtttgtttgataattattt
tgagtgcCAAAATCCTACTTCCATTATAATCAAATATAAACCATCCTCTC
ATCTAATCTGAGAAAGGCAGCTTTGGAAATTGTTggtagaaaaaaaaaag
tattgagAAGTTCGGTAAAAGTGTGGTGATTGACTTTACGATCGGGTACC
TTTCGCTGGTTGGTTGGATTATTATTTTTGACACTCCag
Run BLAST on NCBI

transcript from alignment at sc0000385:220109..223018-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021372 ID=TCONS_00021372|Name=TCONS_00021372|organism=Clytia hemisphaerica|type=transcript|length=2910bp|location=Sequence derived from alignment at sc0000385:220109..223018- (Clytia hemisphaerica)
TAAAAAAAACGTCAAAAATCATTAACGAAGGACGGTTGCATTTCAACACA
ATTTCAATTTGTTGGAAATATTTCACTAAAGCAGAAGCGCACGTAATTCA
TGATGTGGGAGGATCCGAAAAAGTTCCTGAAAAAGAAGAACCCGCAACAA
GGTGTTCGTCGTTATCGACGAGCGAGTGAAAATCCAATGGAAGCACTTCA
GATTGTGCTCAAACAATACCGAAACAGTCCTCCACAGTCAGAAGCAGATG
GACATAACCTATCCAATAATGAGCAGTCACCAGAATCATCACCCCAACGC
CAAGCAAGTAACAATGGCTCAAATCTTGATCAAAGCGATGCACCACAGCA
AAATATGCCGAATCCTAACCAGCTAGCCAAGTGTCTCCAAGATTTGACCA
ACGAGTCTGCAGGTATTCACTCCAATGTTGAATGCCAAATGATTGAAGTG
TTGCCGTCAGGTCAGCCCAGATTAACCATCTTAGAGGACGTCTCTTCAAT
CCGGACACGCCACAACATGGGGCTGGGTCCGCTCATGCTTATTGAGCAGA
TGAGAAACACTTGTAAACCATCTACCGATATTGTACGACCAAGCCTGCGA
CGTTCACGATTAAAGGCGACAGATAAGTCGTTTTTAAGGCCATTGGCTTT
AGAGGAGGGAGCAGAAAAGGGGAAACCACTCCGTCACAAGAAGGGAGATG
TCCCATGGGGCGTCCGAATGAGGCGTTGGCGCCCTTGCGATGATGGCGTC
AGCCAAGATGAACGATCGATGGAATTACTTGAACACGTTGAGGAAGACAA
ATTTTATAAGATGACAGGATCATCTAAAAGTGTTGAAAACACTAACTCTC
ATACCCATTCAGTCTTTCAAACAGATGAAGACACTTTTTCAATGCCACCT
AAAGACCAAAAAATAGAAGATTCTCCATCTCCACCACGGGGAGAGCAAAC
ACCATCTATGGTGCTGGACACTGAAGGTGTTCATCAAACAGTTAGCGAAC
AAGAACTATGTATTGGAGATTCCCTGCTTGGGGCTGTAGGTTACGATCGA
CCAAAGCTCGATACTTCGTCACAGGCAATTGAGGGAAGAAGTGAGCTCTT
TAAAGGTGATTCACCATCAGCTAACATCAAAGTTGCTTCTTTTGGCGATA
TAAACACATCACCAGAAGTACACACACAAAGATTCTCAGCTCCGGTTCTA
AACACCGTTCGTTATGACGATATCTTGAGTCCTGAAGTATTTGAAAAGCA
CAACAAAGATGTTAAATTAAAACGAAAACAGAGCAAGACCAAAGCTACGA
GAGCCAATATGTCAGCAAGCAAAGAATCGTTCAAGAAAAAGTTACCATCA
GATATGTTTATTGCTCACAAAGATGAAACAGAATCTGCAGTATCATTGAC
GTGGCATTCCGGTAGAAGTTCATCCGGCAACTTGACTTTGTCCAATAAGT
CATTAAAGATTTCCGCAATTGAAGCCGAAAAACAATCCATCTTTGAAGGA
ATAAAATCAAGAGGTTTATACGCCGCTTACCAAGCATGCATGTCAGAATT
CGAATTTGAGATGGATAAAGAAGTTGATCAAGGACAAGCGAACGGCACCG
AGGAGCCTGAAACCGAGAGAGAAAGAGGTCCAGTGATTACATATGACCTC
GAAAACGAAGTAGAAGAAGAAGAAGGAGAGTATGTTGTGTCTCGTTGGGT
TAGGAGCGAAGACGCCGTGACCGAACAATTGATTATCCCAGACACTCATT
GGGTTAGGAACGAAGATTGCACCGAGACCCAAACATCTGAGGTTCCAGTT
GTTAATGAAGTGGAAGATATCCAAATCGTCAATCAAGAACAAGAAAGAAG
CATCGATGAATCAAAACGTGAAAGTTGTTCTATTGCACTATACAATGAGC
GGTTGACAAAGGTATCATAAATTCTTCATCAAAAACGTAAAATAACATTC
ACGTACAATTATAATGACAAGTTTCTTTTTGTACAGAAGTCTAGTTTTGT
ATTTTAATATTAAGGAATTTCAGGATGTTTTGTCATCGATGACGATTTAT
CTCTAGTGATTTTCGAGAAAAGGCTTACCCAGAAATTTTACGGTATCCTC
GGTCAATCTAGGGTATTTCATTTTCAAATTTTAGATCATGAAGGCCATTA
CGAAAGTTCATCAAGAGCAGTGCGGTCATTTCACTGAATTAGATTGCGAA
CATCGTGTTGGCATGTCTCCCATCAATGACGTCATCAACGAAAATAGAAG
GAGCACAGTTATGAGTAGAGGTAGGATATTTTAATTCAATTCTTGGACTA
TCCAACAAGATTACTAATGTTCAGAATTAAAAAAAAGGCAATAAAGTATG
TTATAAATATCTTTGGTAAAAATGGGATATTGGAAGTACTAAAAGACATG
AAAATATTTCCTGGAAAGCTTCTTGGAACAAAAATTCCTGGAAAAAAGTT
TCAAGCACTGGTACTATAGGCTTGATAGATAACATGACTGTTAATTTTCA
AATCGATTTTTCTTACAGTTTCAGCTTTTATTCAACGACGAACAAAGCTT
CGAAGAATGCGAAACAGAGTAAAGAGAGTGTGGAAAGCAATAAAGAAACC
TGCTGTATGGTGCATTGGTGGTAGAAAAACCAATACCAACCACAATGTTG
CAGCCCAAGTATTCCAAGTTGAATTTGTTGATGATGACCAAATGTAAAAA
ATGTTTGTTTGATAATTATTTTGAGTGCCAAAATCCTACTTCCATTATAA
TCAAATATAAACCATCCTCTCATCTAATCTGAGAAAGGCAGCTTTGGAAA
TTGTTGGTAGAAAAAAAAAAGTATTGAGAAGTTCGGTAAAAGTGTGGTGA
TTGACTTTACGATCGGGTACCTTTCGCTGGTTGGTTGGATTATTATTTTT
GACACTCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011965XLOC_011965Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021372-exon-sc0000385-1575043694:221108..223018TCONS_00021372-exon-sc0000385-1575043694:221108..223018Clytia hemisphaericaexon
TCONS_00021372-exon-sc0000385-1575043694:220749..220884TCONS_00021372-exon-sc0000385-1575043694:220749..220884Clytia hemisphaericaexon
TCONS_00021372-exon-sc0000385-1575043694:220109..220500TCONS_00021372-exon-sc0000385-1575043694:220109..220500Clytia hemisphaericaexon
TCONS_00021372-exon-sc0000385-1510915933:221108..223018TCONS_00021372-exon-sc0000385-1510915933:221108..223018Clytia hemisphaericaexon
TCONS_00021372-exon-sc0000385-1510915933:220749..220884TCONS_00021372-exon-sc0000385-1510915933:220749..220884Clytia hemisphaericaexon
TCONS_00021372-exon-sc0000385-1510915933:220109..220500TCONS_00021372-exon-sc0000385-1510915933:220109..220500Clytia hemisphaericaexon
TCONS_00021372-exon-sc0000385-1491911889:221108..223018TCONS_00021372-exon-sc0000385-1491911889:221108..223018Clytia hemisphaericaexon
TCONS_00021372-exon-sc0000385-1491911889:220749..220884TCONS_00021372-exon-sc0000385-1491911889:220749..220884Clytia hemisphaericaexon
TCONS_00021372-exon-sc0000385-1491911889:220109..220500TCONS_00021372-exon-sc0000385-1491911889:220109..220500Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:220109..223018 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0310282	0	0	0.150182	0.112856	0	0	0	0.0498182	0	0.0529775	0	0.0219765	0	0.0193894	0	0	0	0	0	0	0	0	0.0978438	0.303342	0	0	0.0176581	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021372 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top