TCONS_00021374 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021374
Unique NameTCONS_00021374
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2263

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021374 ID=TCONS_00021374|Name=TCONS_00021374|organism=Clytia hemisphaerica|type=transcript|length=2263bp
CGAGTAATCATCAGGTaacaaaggaaaacaaaaatttattttactttcgt
ttttcgacatgaatattttttgggAAAGAACTTTTGACTGTTCAGTGCTG
AAAGAAGAGACAAAATGACACACCAACAGTATCAAGTTGACCGAAATTAT
TTATGGAACATTTTTCAAAGAATTGACCGCAATGGGGATCAGAGCATTGA
CTGCAACGAATTACAAACAGCtctcaaaaatgGCTCATGGGCGCCATTCA
ATTTGGAAACAACAAGACTTATGATAGGTATGTTTGACTTTAACAACAAT
GGAACGATCGATTTCAATGAGTTTTGTTCTCTGTGGCAATACGTTACAGA
TTGGACGCGAACTTTCAAAGGGTATGACCTGGATGGGAACGGAACAATCG
ACCACAAAGAACTTTCACAAGctaTGCATGGATTTGGTTTTCGCGTTTCT
GAAAGAATTATCAGCATATTGATTCGTAGATTTGATCGGACGGGTCAGGG
ACAAGTTCGTTTTGATGATTTCATTCAATTGTGCATTATCGTGAGGatGC
TGACGAATTCGTTCCAACGTTTCGACTATCAACGTAACGGAAATATTCAA
GTTTCTTACGAACAGTTCTTAACAATGGTCTTCCAAACTAAAGCCGCTAC
TTCTAAGTAAACATTTCATGTCAAATTTTTTTAGGGATTTCAACTTGTAA
AAGGGATAAGAAAGATAGTTTCTAATTCGaagctctattattcgaatctt
tctgtaattcgaattaaaaTACCTCTACGTCCTCTACTGAAAGGTGGTTT
AAATACTCTCTGTAACTCGAAtccttctctaattcgaagaaaaattttgg
ccccttgaagatcgaattcgGGAGGGAAGTGATTTCATAGATGTAAGCGA
TGATATAAGGGGTGGTGATATTTTAGATTCTGAAAAAGAATAGAAAATCG
AATTTTCAATTTAGATTTTGTGAAATAAGCTCAGAGCGTAATTGTAATAA
GGGTGTCTATTGCGGAAAATACCTTAGgattaaaagttagattttcatta
ttTATCCCAAAGTTGTCAGacagtactttaggcgtacaaactttcgcgaa
atttacggtatttactttcgcgaaatcTTTTTCGCGATTATCAACACGAA
TCAAGACAGGAAATGAAAGAGCTGAAcatttcacatgaaaaaaatgctta
gagggaaaaatacttcttgaattggATTGAAACTTTTTTAACTACTTTTG
AGGTTTTAACAGGCTAAAGTGTCATAAATCTTACATTTAACCTTAAGtta
gaagttttacagattttctattttgtcaagaatttttcgcgagcataaac
tttcatgAATGGCCCCTTCAAGAATCtctaaagacatttactttcgcgag
aAGGGCTAAAATTCGTGAAAATCGCAAAGGTTTttgctcgcaaaagtttg
tacgcctaaagtagtcgaaaaaatattttagaactCGATAACTCCCATAA
CTGGAATGCCTTCACACCTTGTAGAAGTTTTCTGGTCCATTCGGGTATCA
AAACCTTATAAACaaatctctataactcgaatgttccAAAttcttgttcg
agttatggagacttcacCGTACTTTTAACGATAGTAACCGAGTTTCATTT
ATTTCATGGGAGTTTCAGATTTTTTTACATCTTATTTTTGTatacaattt
tttgtaaatatcttTAAATCTTTACTGCATTATACAATATTAAAATAGaa
tacattacattacatttaGCAGTCAAAATGCCTCGCCCATTATATTTTAA
ACCATAAAACTACCAAGTTTTTATCGCAAAAAGTTTTCAGGAACTCCTTC
TATACATCTATTGGTCACTCTCAGTGAAAGGTGATGTTGTGTGCAGGGTT
GCCATGGCGATCGGCGCATTTTGACAAACAATAATCGTGATCCTTTCTAT
CAAAATGGCCGTCAGCGAACCAATGAACGCCTTCATAATAAACTTTCGCA
GCAGTGTGGCATTGTCCTTGTTGACTTGCAATCTCCCGCCACCAGTCAGT
CATTACCTGAAGAAGGGAGCGCTTGATACGCCCTCTTTGTAACACGTGGT
CGCATGTCAAAACCATGTTTTTATAGAAGGCTTCATCACATTGTTGACGT
GTCCAGTTGTAATGATATCCCTATTAGATTAGATAAGTTTCAAATTTACA
AAGTTGATTCTGTTATTATTGAGATGGCAAGATTCATTTACTTCTTTGAG
CATAGGGGAGCAC
Run BLAST on NCBI

protein sequence of TCONS_00021374-protein

>TCONS_00021374-protein ID=TCONS_00021374-protein|Name=TCONS_00021374-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MTHQQYQVDRNYLWNIFQRIDRNGDQSIDCNELQTALKNGSWAPFNLETT
RLMIGMFDFNNNGTIDFNEFCSLWQYVTDWTRTFKGYDLDGNGTIDHKEL
SQAMHGFGFRVSERIISILIRRFDRTGQGQVRFDDFIQLCIIVRMLTNSF
QRFDYQRNGNIQVSYEQFLTMVFQTKAATSK
Run BLAST on NCBI

transcript from alignment at sc0000385:226420..234592-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021374 ID=TCONS_00021374|Name=TCONS_00021374|organism=Clytia hemisphaerica|type=transcript|length=8173bp|location=Sequence derived from alignment at sc0000385:226420..234592- (Clytia hemisphaerica)
CGAGTAATCATCAGGTAACAAAGGAAAACAAAAATTTATTTTACTTTCGT
TTTTCGACATGAATATTTTTTGGGAAAGAACTTTTGACTGTTCAGTGCTG
AAAGAAGAGACAAAATGACACACCAACAGTATCAAGTTGACCGAAATTAT
TTATGGAACATTTTTCAAAGGTATATAAGCTCAAAGAACTTCATCCAAGT
TTTTTATTCTGTGTGTTTCAATGGACCATTTCATTCAGCCTGGCAAAATC
CTTGTAGTACTGTAATCAAGGACGACCCACGGCATGGCCCGAACATATTC
GGGCCTGTTCGGACCATGCTCGGGCCACAAAAAAGTATTATTGAATCGGC
CCCCGAATATTTTTTTCGGACCATGTTCGGGCCATGTATTTACAATTGAT
ATGGATTTGCTCGGGCCATGTTACCGTGAGTGGTCCTAAATCCGACAGCC
CTGCCTAAATCCGACCCCCCAAATGACTGCTATGAAAAAAAATTCTATGT
TTACAAACATTCCCTCTCCAAGTTGAACAATAAACTACTGCAAGAACTCT
TGAAAAAAACATCTAACAATATGACTATAATGTCAAGATCTGAAGATGTC
AATTAATGAGATCAAAAACGTGTGAGTTGTAAAAATAATTACCTCTATTA
TTCTGAATCCGTTGCGCTCCTGTTTAACGTTAACAATTCGGACAATTTTG
TATAAAAGCAATTATTGTTATTTGGTTCAAAATCAGTGTATCAAATTTCT
CAGTTTAGTTGACACTTTGGTGGTATCTTCGTTGCGTCACAGTTTTTATT
TTAGTTTGTATCTTCGATCTTTGAAAGACCCCATCGGATTTAGGCAGGGC
TGTCGGATTTAGGACCACTCACGGTACCTTTCCTGGTTTATCATCACCCA
TTGTTAAATATTTTCATTAGACAAATTCAAAGTTCCAAATACCAGTTTGA
TTCACAAAGTTGTATAACAGTACAAAAAACGATCCAGAAAAATTCTGCTT
CGAATAGGAGAAGACCACGAGAGAAAAGGGAACGGGATAAAGAATAAAAA
GAAGACCATATTATGTAAGATTTGAATCATTATTTTTAGTAATTTTCCTA
ACTTAATTGGAAAATAGATGATTAACTTTTATATTTGAACAATATATATT
TAAATAAAGATGAAGATTTTTAAATTTGTTTGCTAAAATAAGGAATTTAA
AATATTGGGTCCTGAAATTACACGCGCGATCGTAGCAAGTTTTCGAAAAT
CTGGCCCGAACATGGTCTGAAACTGCGCGGGCCCGCGCGGGCCATGCGCG
GGCCATTTTTAAAAAGTATTAATCAAGAGGCCCAAACATGTTTGGGCCAT
GCCGTGGGTCGTAATCCAGGCGGTGTCAACCGAACCCTATCGAACCGATT
TTCGTTATCGAACCATCGAACTTTTTTGAATAAAATCGAACGATAGCTGT
TCGATTACCGAACCCGATCGAACAGCTATCAAACTTTACGAAAATTTCTT
GATAAGTTCGATTTAGTTCGATGAGTTTTCTTTGTTCAATGAAGTTCGAT
TGATGTTCGATGAGTTCAATTTAAGTTCGTTGTGGTTCGATGGTTGTGTC
GGATAGATTCTACTTTTCTTTACCTTTCAGAAAATTACGAGGTTGTTTAA
TCAAAACACAGGCACGGAATGCTTCTTTCTGTAAAGAAAGTAATAAAGAT
TAAAATCTTTTTTTTTACAAATTAAACGACCAATACACCGCCTGGTGTAA
TGTGTGTGTTTATTTTTGATCCAGAGTAGGCGGAGAAGTGTAAAAAGAAA
TACCACCGTCACCTGCTCTAATTTGGGACGATTGGTCAAATCTTGGGATT
GTTGATTTCTGGACTGTATTTTCACTTTATACTGTCAACTGCTCAAATCT
TTTTGACATCAAGTTTGATTTGATACTTCATTCCAACCATAAAGTTGATC
AATCAAACTTTCAACGCTCCACAATCACAACCAAATGTATTTTTAAAGCA
TTTTAAAAGTATATAATTTGAAGATGTAATTAACAATTTAATCACACGCT
ATTCACATCTTAATGCCATTTTTTGTGTTGTTTTTTCTCTAGAGACTTTT
TTCCAGCGTGTGCGCGCGATATTGATTGACATGTCAAAGTTACAGAGTGT
CGATAACAACAGATCACAACACAATTTTCCGCGGAGGAACAGACTTTTTT
ATATCTGTTTTGGACGCTTGCGTAAATGCGTGCGGGATTGCATTTACGCT
TTTCTTGTTGCAAAGATTTGTTTTTTTTGCAGGTTTGAAAGTCTACCTGG
TGAGAAGTAGCATATTCACATTATTATATTTGGTATCTATGATTTGTGAT
TATGTTAATTTTTAATGATTTTGGAGGTTCGGTGAAATGGTGACGGAATG
GCTGTCACATGTTTTATTAGATAGTCCCAATTTAGAGTTTGACAGTAGAC
AGCTTGGGAAATACCGTGCGTACCGAGCTGCGTAGTTGATTTGTTTTGAA
ATTTTGCTGCTATGATTGGTCAGTCATTTGATGGCTATGCAAGTTTCCCT
CTACTGATGCAAGTTACCCGACTTCACTGTACATAGTTGACACGTAATAT
ACATTGACAGAAGTATTACCTATGTAATGTTTATATTTAAATCTGCTATA
AAAATGAAAGTGGTCTCTTCTTCTCAGTGGCTTCTGCAAGTCTTTTTAAA
TTCCAACCAATGAGATTGTCGCGTATGATGAAGGTTGAAGCATTTTTTCT
TACCCTTAGTTCTCAAATGAAAGCAGGAATTTGATGCAAGCGTTATTCTT
TCAAAGAATACTTTCATTTGATTGAATACTTCTTTTTAAACAATTTTCAC
ACAGCAATTTTTTGATTGGACAAAATAAAGATCTAATATTTTCCAGGGGT
GAATTTTTAGCTTTTCTTCATGTTAGCCAATCTGGGGAGTCTTCATATAT
ATACCATTGGAAAGCTATCTTAATCTTGAGTTTGGAATATCCCCAAGATT
GGTGAACAATCATTTTTTGTCACTTACTACTTTTTTCTTTGATCTTTTAC
TGTTTTCTTTTGTTGCATCATCTATTTATCCTATATACTTTTTGATTTGA
TATTTATTTCATTTAATGAATGCTGTTTTGCTGTTGCAACTGGTTACAAT
CATAGTTTGATTTTCTTGATCTGACTTGATGAATTATGTTCTGTCTTTAT
AGAATTGACCGCAATGGGGATCAGAGCATTGACTGCAACGAATTACAAAC
AGCTCTCAAAAATGGTTTGTTTTTTACACCCCTCAAATTTCTTTTTCTTT
GTACATTTTTAATTTTCAAAGGGTCCTGTATTTACTGAATGAAGAATCTA
GTTATATTTTGTATCACTTTTTGAAGGCTGCAATTAGTTCTTTACAATTA
GAATTAGTGGTGAGGTGGATGTAGAAAGATTGAAAGAGCAAAACATTGGT
TAACAGAAGCTGCTTTTTGCTTATTTTGGACGTTTTGGCCTCAACAGAGT
ACCATCATCATCACTATCATCAGTAAAGAACATTTTCATTTTCATTCGAA
ACGTCTAAACAAAATTTCAAAATGAACCAAAAGCAGCTTCTGTTATTCAA
CCTATTGCTTAAGATGTATGGAAGGATTCATTTATTTAAAACATTGGTTA
CAAATACTGCACAAATTTAAATGATGATATTTTTTTATCTAGGCTCATGG
GCGCCATTCAATTTGGAAACAACAAGACTTATGATAGGTAACATGATCAT
TTTTCAACTGTGTAATCATTTTTTAGTTCCATTTACAATGGGAACCCAAT
TGTACAAAAGAGTGGTATATATAAAAATATATATAAAAAGAAGTCACTGA
GGTATTACCGACTTTAACTTTCATTTCTTAGGTATGTTTGACTTTAACAA
CAATGGAACGATCGATTTCAATGAGTTTTGTTCTCTGTGGCAATACGTTA
CAGATTGGACGCGAACTTTCAAAGGGTATGACCTGGATGGGAACGGAACA
ATCGACCACAAAGAACTTTCACAAGGTTTCACTTATTAATACCGAAGCGC
GATTTATTTCAGAAAGAAAAAGTAAATTTGATTAACTAAGGAGCAAATAA
CTTCGTGATTATTTCTTGAATAATTCAAGAACTTCTTTGAAGTCTTTTTC
AACTTTCTCTGTGTAATCGAAAAATACCATTTTTCATAAGAGAGGTTATA
TGAGAATTTAACGTTAATGGTAGATTATTATACATCTCGTTTTTCTTTTT
CAGCTATGCATGGATTTGGTAAGTGAATCTTTCATCACAATTTCAATGCA
GCCATAAGTTCTTTAGATGTCCAGACTAAATTCCCTTTCGATGCGATCCT
CAAAAAAATATGAAAATAATACAATGCTTTTGAAAATAATTTGGTAATTA
TCTATAAGTTTGACTAGGAAAAACCTAGTCTGAATTTTGANATCCATAAA
CTCTTCAGATGTCCAGACTACATTTCCTTTCGATCCTCCTTGAAAAATAT
GAAAATAATACAATGCTTTTGAAAATAATTTGGTAATTATCTATAAGTTT
GACTAGTTTGAATTTTGCACCTCTTTTGGACCTTTTGAAATATTTATCTA
ATTGACTTGAAATTTTGTGCACCAAACATGAATTGGAAACATTGAAGAAA
ATTTCAGCATCATTGACGTCGTGATTTTTTGAAAATACCGAAAATAGGAC
CCCCTATCTAACTTTTTTTCACTTTAATTTGTTTGCTCAAAATTTTGTGA
GGCAACTCCACGCGACATTCATTTTTGGGGCATAGGATCAATTTTTAGCC
ACATGTTGGTATTGTGTATTTTACAGACACCGGCCTAAAATTGCCCTTTT
TGCCTAAATCAACCCTAGGTTACAATGTAAAAATACAAACTTGCAGACAA
AATTTCAGCAAAATCGGACGAGCAGTTATGCTGAAAGTGAGCATTTTCAC
TTACGTTATTAATTTTGCGCACTGACTTAAATGGTCAATATCTATCACTG
GTGAAAATTTCAAGTCAAAAGCTCCAGTAGTTCCTGAGTTCCGACAGGTT
GTCAATGTGTATTTAAAAAAACGGTCTTCAAAGTACTAAATATTCATGGG
AAGAAAATCTTTCTGTTACTAGCTTCTTTAATTTGACAAATCAGCCTTCA
GGAAGAAATTTCAGTCAAATCGAACGAGTCGATCAGTAAATACATTCTGG
TCTGTAAAATACCAACCAGACAGGTGGCCGAACCAAATTTTTGTCAATCA
TCTTTGATTAACCATATTTACCACTGGTCAAACGTTTAAGGTCATAGCAC
TTGTCAATCCTGAGATTTTAAGGGGGCCTCGAGTCCCTCCCCCAAAGATG
CTTCCCCTAGTAAAGAAAATAGAAAGATGCTCGAAGTGTTGTGATAATTG
AATATTTTTTCTTAGGTTTTCGCGTTTCTGAAAGAATTATCAGCATATTG
ATTCGTAGATTTGATCGGACGGGTCAGGGACAAGTTCGTTTTGATGATTT
CATTCAATTGTGCATTATCGTGAGGGTGAGTTATTTCTTTTTCTATTTCT
TTGTTTATCGATTCAGTTCCAACAAAACTAGTGTCTTGTTGATACGAATT
TTAATATACGTACGTACGTTCGTTAAAAATTCAATACATTTCAATCTACT
AATCTAATTTGCTTTTGCTACATGTTTTTTATAAGCAAGTGTATGCCCCT
TGGTCAGGCTCGTGTATGCTTAAGTTCTCAAAGCATCCAGGCGTAGCTTA
TGCTTATTATATGCTTATGAATCATGCTTATGATTCACCTCGAGCCAAGT
TTTTAGTGAAATTTCAGAAATTTTTGTAAAAATTTGTTCAGATTTTGGGA
GCAGTGAAATGTAGGAAACCGTGGAAAGTCCTTTTTTTACTTGACTCTCC
TACCAAACCTTTTTAAACAGATAAACAGTGTTCAAAGTTTTTCCGTCTCT
GACGGATTTCCGTCTCAGCGAGGTACAAAAAGAGGTTTTCCCGTCTCCAG
ATTCAACAAAATTTCCGTAAAACATGAAGAAACTGGCCAGATTTGTTGTT
TGAAGTCTATTTCCGTCTGTGATGAAAACTTTGCTTTGACCACTGGATAA
AAATGACAACTGGAAAAATATTGCAGACTGACGTATAAGCTTATGTTCTG
TTTAGGAATTCTGCAAATCTGAGCCTTCATATGCTTAAAAGCGTTATGCT
TATAAAATCCATTAAAACTGAGAGAGGATTAGTTAGCGTTTTCAAGTTAA
AATAAATTTCTTTGCGAGGAGGTTACATCATGACAAATAGGCTCGTGGGT
CAAACTTGATTGTCAGGATGTTTTTTCGTCTAGAGGTTAATATTTTTCGC
CCGGGGAGTCAAAGTTCCTTGTCTGAGGAGTCTAAATTCTTTTCTTGAGA
AGTCTTAACTACTGGAAAATGTCGCACCCCCTATGTAGTTTTTTTTCTAT
TTTCAGATGCTGACGAATTCGTTCCAACGTTTCGACTATCAACGTAACGG
AAATATTCAAGTTTCTTACGAACAGTTCTTAACAATGGTCTTCCAAACTA
AAGCCGCTACTTCTAAGTAAACATTTCATGTCAAATTTTTTTAGGGATTT
CAACTTGTAAAAGGGATAAGAAAGATAGTTTCTAATTCGAAGCTCTATTA
TTCGAATCTTTCTGTAATTCGAATTAAAATACCTCTACGTCCTCTACTGA
AAGGTGGTTTAAATACTCTCTGTAACTCGAATCCTTCTCTAATTCGAAGA
AAAATTTTGGCCCCTTGAAGATCGAATTCGGGAGGGAAGTGATTTCATAG
ATGTAAGCGATGATATAAGGGGTGGTGATATTTTAGATTCTGAAAAAGAA
TAGAAAATCGAATTTTCAATTTAGATTTTGTGAAATAAGCTCAGAGCGTA
ATTGTAATAAGGGTGTCTATTGCGGAAAATACCTTAGGATTAAAAGTTAG
ATTTTCATTATTTATCCCAAAGTTGTCAGACAGTACTTTAGGCGTACAAA
CTTTCGCGAAATTTACGGTATTTACTTTCGCGAAATCTTTTTCGCGATTA
TCAACACGAATCAAGACAGGAAATGAAAGAGCTGAACATTTCACATGAAA
AAAATGCTTAGAGGGAAAAATACTTCTTGAATTGGATTGAAACTTTTTTA
ACTACTTTTGAGGTTTTAACAGGCTAAAGTGTCATAAATCTTACATTTAA
CCTTAAGTTAGAAGTTTTACAGATTTTCTATTTTGTCAAGAATTTTTCGC
GAGCATAAACTTTCATGAATGGCCCCTTCAAGAATCTCTAAAGACATTTA
CTTTCGCGAGAAGGGCTAAAATTCGTGAAAATCGCAAAGGTTTTTGCTCG
CAAAAGTTTGTACGCCTAAAGTAGTCGAAAAAATATTTTAGAACTCGATA
ACTCCCATAACTGGAATGCCTTCACACCTTGTAGAAGTTTTCTGGTCCAT
TCGGGTATCAAAACCTTATAAACAAATCTCTATAACTCGAATGTTCCAAA
TTCTTGTTCGAGTTATGGAGACTTCACCGTACTTTTAACGATAGTAACCG
AGTTTCATTTATTTCATGGGAGTTTCAGATTTTTTTACATCTTATTTTTG
TATACAATTTTTTGTAAATATCTTTAAATCTTTACTGCATTATACAATAT
TAAAATAGAATACATTACATTACATTTAGCAGTCAAAATGCCTCGCCCAT
TATATTTTAAACCATAAAACTACCAAGTTTTTATCGCAAAAAGTTTTCAG
GAACTCCTTCTATACATCTATTGGTCACTCTCAGTGAAAGGTGATGTTGT
GTGCAGGGTTGCCATGGCGATCGGCGCATTTTGACAAACAATAATCGTGA
TCCTTTCTATCAAAATGGCCGTCAGCGAACCAATGAACGCCTTCATAATA
AACTTTCGCAGCAGTGTGGCATTGTCCTTGTTGACTTGCAATCTCCCGCC
ACCAGTCAGTCATTACCTGAAGAAGGGAGCGCTTGATACGCCCTCTTTGT
AACACGTGGTCGCATGTCAAAACCATGTTTTTATAGAAGGCTTCATCACA
TTGTTGACGTGTCCAGTTGTAATGATATCCCTATTAGATTAGATAAGTTT
CAAATTTACAAAGTTGATTCTGTTATTATTGAGATGGCAAGATTCATTTA
CTTCTTTGAGCATAGGGGAGCAC

Coding sequence (CDS) from alignment at sc0000385:226420..234592-

>TCONS_00021374 ID=TCONS_00021374|Name=TCONS_00021374|organism=Clytia hemisphaerica|type=CDS|length=3822bp|location=Sequence derived from alignment at sc0000385:226420..234592- (Clytia hemisphaerica)
ATGCTGACGAATTCGTTCCAACGTTTCGACTATCAACGTAACGGAAATAT
TCAAGTTTCTTACGAACAGTTCTTAACAATGGTCTTCCAAACTAAAGCCG
CTACTTCTAAGTAAGTTTTCGCGTTTCTGAAAGAATTATCAGCATATTGA
TTCGTAGATTTGATCGGACGGGTCAGGGACAAGTTCGTTTTGATGATTTC
ATTCAATTGTGCATTATCGTGAGGCTATGCATGGATTTGGTATGTTTGAC
TTTAACAACAATGGAACGATCGATTTCAATGAGTTTTGTTCTCTGTGGCA
ATACGTTACAGATTGGACGCGAACTTTCAAAGGGTATGACCTGGATGGGA
ACGGAACAATCGACCACAAAGAACTTTCACAAGGCTCATGGGCGCCATTC
AATTTGGAAACAACAAGACTTATGATAGAATTGACCGCAATGGGGATCAG
AGCATTGACTGCAACGAATTACAAACAGCTCTCAAAAATGATGACACACC
AACAGTATCAAGTTGACCGAAATTATTTATGGAACATTTTTCAAAGATGC
TGACGAATTCGTTCCAACGTTTCGACTATCAACGTAACGGAAATATTCAA
GTTTCTTACGAACAGTTCTTAACAATGGTCTTCCAAACTAAAGCCGCTAC
TTCTAAGTAAGTTTTCGCGTTTCTGAAAGAATTATCAGCATATTGATTCG
TAGATTTGATCGGACGGGTCAGGGACAAGTTCGTTTTGATGATTTCATTC
AATTGTGCATTATCGTGAGGCTATGCATGGATTTGGTATGTTTGACTTTA
ACAACAATGGAACGATCGATTTCAATGAGTTTTGTTCTCTGTGGCAATAC
GTTACAGATTGGACGCGAACTTTCAAAGGGTATGACCTGGATGGGAACGG
AACAATCGACCACAAAGAACTTTCACAAGGCTCATGGGCGCCATTCAATT
TGGAAACAACAAGACTTATGATAGAATTGACCGCAATGGGGATCAGAGCA
TTGACTGCAACGAATTACAAACAGCTCTCAAAAATGATGACACACCAACA
GTATCAAGTTGACCGAAATTATTTATGGAACATTTTTCAAAGATGCTGAC
GAATTCGTTCCAACGTTTCGACTATCAACGTAACGGAAATATTCAAGTTT
CTTACGAACAGTTCTTAACAATGGTCTTCCAAACTAAAGCCGCTACTTCT
AAGTAAGTTTTCGCGTTTCTGAAAGAATTATCAGCATATTGATTCGTAGA
TTTGATCGGACGGGTCAGGGACAAGTTCGTTTTGATGATTTCATTCAATT
GTGCATTATCGTGAGGCTATGCATGGATTTGGTATGTTTGACTTTAACAA
CAATGGAACGATCGATTTCAATGAGTTTTGTTCTCTGTGGCAATACGTTA
CAGATTGGACGCGAACTTTCAAAGGGTATGACCTGGATGGGAACGGAACA
ATCGACCACAAAGAACTTTCACAAGGCTCATGGGCGCCATTCAATTTGGA
AACAACAAGACTTATGATAGAATTGACCGCAATGGGGATCAGAGCATTGA
CTGCAACGAATTACAAACAGCTCTCAAAAATGATGACACACCAACAGTAT
CAAGTTGACCGAAATTATTTATGGAACATTTTTCAAAGATGCTGACGAAT
TCGTTCCAACGTTTCGACTATCAACGTAACGGAAATATTCAAGTTTCTTA
CGAACAGTTCTTAACAATGGTCTTCCAAACTAAAGCCGCTACTTCTAAGT
AAGTTTTCGCGTTTCTGAAAGAATTATCAGCATATTGATTCGTAGATTTG
ATCGGACGGGTCAGGGACAAGTTCGTTTTGATGATTTCATTCAATTGTGC
ATTATCGTGAGGCTATGCATGGATTTGGTATGTTTGACTTTAACAACAAT
GGAACGATCGATTTCAATGAGTTTTGTTCTCTGTGGCAATACGTTACAGA
TTGGACGCGAACTTTCAAAGGGTATGACCTGGATGGGAACGGAACAATCG
ACCACAAAGAACTTTCACAAGGCTCATGGGCGCCATTCAATTTGGAAACA
ACAAGACTTATGATAGAATTGACCGCAATGGGGATCAGAGCATTGACTGC
AACGAATTACAAACAGCTCTCAAAAATGATGACACACCAACAGTATCAAG
TTGACCGAAATTATTTATGGAACATTTTTCAAAGATGCTGACGAATTCGT
TCCAACGTTTCGACTATCAACGTAACGGAAATATTCAAGTTTCTTACGAA
CAGTTCTTAACAATGGTCTTCCAAACTAAAGCCGCTACTTCTAAGTAAGT
TTTCGCGTTTCTGAAAGAATTATCAGCATATTGATTCGTAGATTTGATCG
GACGGGTCAGGGACAAGTTCGTTTTGATGATTTCATTCAATTGTGCATTA
TCGTGAGGCTATGCATGGATTTGGTATGTTTGACTTTAACAACAATGGAA
CGATCGATTTCAATGAGTTTTGTTCTCTGTGGCAATACGTTACAGATTGG
ACGCGAACTTTCAAAGGGTATGACCTGGATGGGAACGGAACAATCGACCA
CAAAGAACTTTCACAAGGCTCATGGGCGCCATTCAATTTGGAAACAACAA
GACTTATGATAGAATTGACCGCAATGGGGATCAGAGCATTGACTGCAACG
AATTACAAACAGCTCTCAAAAATGATGACACACCAACAGTATCAAGTTGA
CCGAAATTATTTATGGAACATTTTTCAAAGATGCTGACGAATTCGTTCCA
ACGTTTCGACTATCAACGTAACGGAAATATTCAAGTTTCTTACGAACAGT
TCTTAACAATGGTCTTCCAAACTAAAGCCGCTACTTCTAAGTAAGTTTTC
GCGTTTCTGAAAGAATTATCAGCATATTGATTCGTAGATTTGATCGGACG
GGTCAGGGACAAGTTCGTTTTGATGATTTCATTCAATTGTGCATTATCGT
GAGGCTATGCATGGATTTGGTATGTTTGACTTTAACAACAATGGAACGAT
CGATTTCAATGAGTTTTGTTCTCTGTGGCAATACGTTACAGATTGGACGC
GAACTTTCAAAGGGTATGACCTGGATGGGAACGGAACAATCGACCACAAA
GAACTTTCACAAGGCTCATGGGCGCCATTCAATTTGGAAACAACAAGACT
TATGATAGAATTGACCGCAATGGGGATCAGAGCATTGACTGCAACGAATT
ACAAACAGCTCTCAAAAATGATGACACACCAACAGTATCAAGTTGACCGA
AATTATTTATGGAACATTTTTCAAAGATGCTGACGAATTCGTTCCAACGT
TTCGACTATCAACGTAACGGAAATATTCAAGTTTCTTACGAACAGTTCTT
AACAATGGTCTTCCAAACTAAAGCCGCTACTTCTAAGTAAGTTTTCGCGT
TTCTGAAAGAATTATCAGCATATTGATTCGTAGATTTGATCGGACGGGTC
AGGGACAAGTTCGTTTTGATGATTTCATTCAATTGTGCATTATCGTGAGG
CTATGCATGGATTTGGTATGTTTGACTTTAACAACAATGGAACGATCGAT
TTCAATGAGTTTTGTTCTCTGTGGCAATACGTTACAGATTGGACGCGAAC
TTTCAAAGGGTATGACCTGGATGGGAACGGAACAATCGACCACAAAGAAC
TTTCACAAGGCTCATGGGCGCCATTCAATTTGGAAACAACAAGACTTATG
ATAGAATTGACCGCAATGGGGATCAGAGCATTGACTGCAACGAATTACAA
ACAGCTCTCAAAAATGATGACACACCAACAGTATCAAGTTGACCGAAATT
ATTTATGGAACATTTTTCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011966XLOC_011966Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021374-proteinTCONS_00021374-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021374-exon-sc0000385-1575043694:234423..234592TCONS_00021374-exon-sc0000385-1575043694:234423..234592Clytia hemisphaericaexon
TCONS_00021374-exon-sc0000385-1575043694:231329..231390TCONS_00021374-exon-sc0000385-1575043694:231329..231390Clytia hemisphaericaexon
TCONS_00021374-exon-sc0000385-1575043694:230856..230900TCONS_00021374-exon-sc0000385-1575043694:230856..230900Clytia hemisphaericaexon
TCONS_00021374-exon-sc0000385-1575043694:230568..230711TCONS_00021374-exon-sc0000385-1575043694:230568..230711Clytia hemisphaericaexon
TCONS_00021374-exon-sc0000385-1575043694:230325..230339TCONS_00021374-exon-sc0000385-1575043694:230325..230339Clytia hemisphaericaexon
TCONS_00021374-exon-sc0000385-1575043694:229068..229177TCONS_00021374-exon-sc0000385-1575043694:229068..229177Clytia hemisphaericaexon
TCONS_00021374-exon-sc0000385-1575043694:226420..228136TCONS_00021374-exon-sc0000385-1575043694:226420..228136Clytia hemisphaericaexon
TCONS_00021374-exon-sc0000385-1510915933:234423..234592TCONS_00021374-exon-sc0000385-1510915933:234423..234592Clytia hemisphaericaexon
TCONS_00021374-exon-sc0000385-1510915933:231329..231390TCONS_00021374-exon-sc0000385-1510915933:231329..231390Clytia hemisphaericaexon
TCONS_00021374-exon-sc0000385-1510915933:230856..230900TCONS_00021374-exon-sc0000385-1510915933:230856..230900Clytia hemisphaericaexon
TCONS_00021374-exon-sc0000385-1510915933:230568..230711TCONS_00021374-exon-sc0000385-1510915933:230568..230711Clytia hemisphaericaexon
TCONS_00021374-exon-sc0000385-1510915933:230325..230339TCONS_00021374-exon-sc0000385-1510915933:230325..230339Clytia hemisphaericaexon
TCONS_00021374-exon-sc0000385-1510915933:229068..229177TCONS_00021374-exon-sc0000385-1510915933:229068..229177Clytia hemisphaericaexon
TCONS_00021374-exon-sc0000385-1510915933:226420..228136TCONS_00021374-exon-sc0000385-1510915933:226420..228136Clytia hemisphaericaexon
TCONS_00021374-exon-sc0000385-1491911889:234423..234592TCONS_00021374-exon-sc0000385-1491911889:234423..234592Clytia hemisphaericaexon
TCONS_00021374-exon-sc0000385-1491911889:231329..231390TCONS_00021374-exon-sc0000385-1491911889:231329..231390Clytia hemisphaericaexon
TCONS_00021374-exon-sc0000385-1491911889:230856..230900TCONS_00021374-exon-sc0000385-1491911889:230856..230900Clytia hemisphaericaexon
TCONS_00021374-exon-sc0000385-1491911889:230568..230711TCONS_00021374-exon-sc0000385-1491911889:230568..230711Clytia hemisphaericaexon
TCONS_00021374-exon-sc0000385-1491911889:230325..230339TCONS_00021374-exon-sc0000385-1491911889:230325..230339Clytia hemisphaericaexon
TCONS_00021374-exon-sc0000385-1491911889:229068..229177TCONS_00021374-exon-sc0000385-1491911889:229068..229177Clytia hemisphaericaexon
TCONS_00021374-exon-sc0000385-1491911889:226420..228136TCONS_00021374-exon-sc0000385-1491911889:226420..228136Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:226420..234592 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.85388	10.0261	7.51828	7.36913	4.48087	3.54408	7.7477	7.82083	6.29323	5.76944	8.47318	6.06671	9.50188	8.30193	9.31712	12.1244	8.21549	7.85299	6.37789	8.11494	6.65176	7.36997	5.1946	6.8944	7.94799	8.21401	7.36021	5.16168	5.8647	5.71486
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
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BLAST of TCONS_00021374 vs. Swiss-Prot (Human)
Match: PDCD6 (Programmed cell death protein 6 OS=Homo sapiens GN=PDCD6 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 7.072e-55
Identity = 86/165 (52.12%), Postives = 121/165 (73.33%), Query Frame = 1 
Query:  139 DRNYLWNIFQRIDRNGDQSIDCNELQTALKNGSWAPFNLETTRLMIGMFDFNNNGTIDFNEFCSLWQYVTDWTRTFKGYDLDGNGTIDHKELSQAMHGFGFRVSERIISILIRRFDRTGQGQVRFDDFIQLCIIVRMLTNSFQRFDYQRNGNIQVSYEQFLTMVF 633
            D+++LWN+FQR+D++    I   ELQ AL NG+W PFN  T R +I MFD  N   ++F+EF  +W+Y+TDW   F+ YD D +G ID  EL QA+ GFG+R+S++   ILIR+FDR G+GQ+ FDDFIQ CI+++ LT+ F+R+D  ++G IQVSYEQ+L+MVF
Sbjct:   24 DQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVF 188
The following BLAST results are available for this feature:
BLAST of TCONS_00021374 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PDCD67.072e-5552.12Programmed cell death protein 6 OS=Homo sapiens GN... [more]
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