TCONS_00021396 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021396
Unique NameTCONS_00021396
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length790

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021396 ID=TCONS_00021396|Name=TCONS_00021396|organism=Clytia hemisphaerica|type=transcript|length=790bp
CCTTGTAAATATCTAGGTCAGGCCTTGGAATAGAGTCAAATCCTTCAGAG
ACATAGATTCTAGCACCTCCTCGGTTGGACTTTGTGCAACAGTCAAAGTG
ATTGTAATTGGTAATTACAGCAGAACTTTTTGCAGAATTTACATCTTTGA
AGCCCGTTTCTGTTATACCAATGAAATTGAAAGGAATATCACAGCTATTG
AGAATTGTAACAAGTTCACCATGATGAAGGCTCAGGGAAGCAATGTTTAA
ATGAAGTGCAGATATAGAGttattgtttttgtgtttttggtTGACCTCAC
TGAGAGAGAGGTAAGGACATTCAAAATTGAGAAGATTGTTTTCAACATGA
TCCTCTTGATTCAGTGCAGAGTCTATGTCTCTAAAAAATTGCAAGTTAAA
ATCATCGCTTGGATCAAGGACCAAATCAAAGTTCTTACCTTGTAGGGTTA
GTTTGAGGTCTTCATGTGAGATACGACCGAATGGTACTTCCAAGTTAAAG
CATCTTTGACATAGCCAGGTACCATCATCATGCTGTAAGCGTTCATATTC
TGATTTGGAGGTGTTGTTACATTTGATGTGAACCCAATAATTACAGTGAT
CACACCAGACAGCTCTATGAGTAGTAGCTACAGGGTTAGAACAGATACCG
CAGGGGTTTTTTATATTACGTATTTTGTTGGTTGCGTTCTTAGACTTAGG
CATAGAGAGAAAAAGAGAGCTAGAGActttaataataaataataatataa
aCAATTAAGTTAATGATAAAGGacaataaaaaggaatttt
Run BLAST on NCBI

protein sequence of TCONS_00021396-protein

>TCONS_00021396-protein ID=TCONS_00021396-protein|Name=TCONS_00021396-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MPKSKNATNKIRNIKNPCGICSNPVATTHRAVWCDHCNYWVHIKCNNTSK
SEYERLQHDDGTWLCQRCFNLEVPFGRISHEDLKLTLQGKNFDLVLDPSD
DFNLQFFRDIDSALNQEDHVENNLLNFECPYLSLSEVNQKHKNNNSISAL
HLNIASLSLHHGELVTILNSCDIPFNFIGITETGFKDVNSAKSSAVITNY
NHFDCCTKSNRGGARIYVSEGFDSIPRPDLDIYK
Run BLAST on NCBI

transcript from alignment at sc0000385:67240..68029

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021396 ID=TCONS_00021396|Name=TCONS_00021396|organism=Clytia hemisphaerica|type=transcript|length=790bp|location=Sequence derived from alignment at sc0000385:67240..68029 (Clytia hemisphaerica)
aaaattcctttttattgtCCTTTATCATTAACTTAATTGtttatattatt
atttattattaaagTCTCTAGCTCTCTTTTTCTCTCTATGCCTAAGTCTA
AGAACGCAACCAACAAAATACGTAATATAAAAAACCCCTGCGGTATCTGT
TCTAACCCTGTAGCTACTACTCATAGAGCTGTCTGGTGTGATCACTGTAA
TTATTGGGTTCACATCAAATGTAACAACACCTCCAAATCAGAATATGAAC
GCTTACAGCATGATGATGGTACCTGGCTATGTCAAAGATGCTTTAACTTG
GAAGTACCATTCGGTCGTATCTCACATGAAGACCTCAAACTAACCCTACA
AGGTAAGAACTTTGATTTGGTCCTTGATCCAAGCGATGATTTTAACTTGC
AATTTTTTAGAGACATAGACTCTGCACTGAATCAAGAGGATCATGTTGAA
AACAATCTTCTCAATTTTGAATGTCCTTACCTCTCTCTCAGTGAGGTCAa
ccaaaaacacaaaaacaataaCTCTATATCTGCACTTCATTTAAACATTG
CTTCCCTGAGCCTTCATCATGGTGAACTTGTTACAATTCTCAATAGCTGT
GATATTCCTTTCAATTTCATTGGTATAACAGAAACGGGCTTCAAAGATGT
AAATTCTGCAAAAAGTTCTGCTGTAATTACCAATTACAATCACTTTGACT
GTTGCACAAAGTCCAACCGAGGAGGTGCTAGAATCTATGTCTCTGAAGGA
TTTGACTCTATTCCAAGGCCTGACCTAGATATTTACAAGG

Coding sequence (CDS) from alignment at sc0000385:67240..68029

>TCONS_00021396 ID=TCONS_00021396|Name=TCONS_00021396|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at sc0000385:67240..68029 (Clytia hemisphaerica)
ATGCCTAAGTCTAAGAACGCAACCAACAAAATACGTAATATAAAAAACCC
CTGCGGTATCTGTTCTAACCCTGTAGCTACTACTCATAGAGCTGTCTGGT
GTGATCACTGTAATTATTGGGTTCACATCAAATGTAACAACACCTCCAAA
TCAGAATATGAACGCTTACAGCATGATGATGGTACCTGGCTATGTCAAAG
ATGCTTTAACTTGGAAGTACCATTCGGTCGTATCTCACATGAAGACCTCA
AACTAACCCTACAAGGTAAGAACTTTGATTTGGTCCTTGATCCAAGCGAT
GATTTTAACTTGCAATTTTTTAGAGACATAGACTCTGCACTGAATCAAGA
GGATCATGTTGAAAACAATCTTCTCAATTTTGAATGTCCTTACCTCTCTC
TCAGTGAGGTCAaccaaaaacacaaaaacaataaCTCTATATCTGCACTT
CATTTAAACATTGCTTCCCTGAGCCTTCATCATGGTGAACTTGTTACAAT
TCTCAATAGCTGTGATATTCCTTTCAATTTCATTGGTATAACAGAAACGG
GCTTCAAAGATGTAAATTCTGCAAAAAGTTCTGCTGTAATTACCAATTAC
AATCACTTTGACTGTTGCACAAAGTCCAACCGAGGAGGTGCTAGAATCTA
TGTCTCTGAAGGATTTGACTCTATTCCAAGGCCTGACCTAGATATTTACA
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011981XLOC_011981Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021396-proteinTCONS_00021396-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021396-exon-sc0000385-1491911889:67240..68029TCONS_00021396-exon-sc0000385-1491911889:67240..68029Clytia hemisphaericaexon
TCONS_00021396-exon-sc0000385-1510915933:67240..68029TCONS_00021396-exon-sc0000385-1510915933:67240..68029Clytia hemisphaericaexon
TCONS_00021396-exon-sc0000385-1575043694:67240..68029TCONS_00021396-exon-sc0000385-1575043694:67240..68029Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:67240..68029 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.122126	0	0.276556	0.270567	2.88215	1.6268	1.72714	2.3519	0.514568	1.21101	0.185596	0.488013	1.0965	0.548277	0.450758	0.186051	0.36672	0.516829	0.519293	0.679253	0.413276	1.20949	0.280056	0.318264	1.5079	1.11172	0.502379	0.357435	0.406653	0.483367
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR019786Zinc_finger_PHD-type_CS
IPR011011Znf_FYVE_PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021396 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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