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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021399 ID=TCONS_00021399|Name=TCONS_00021399|organism=Clytia hemisphaerica|type=transcript|length=947bp
GCCTGAGCCAACTTCTCTCTCACACAGAACGACTTATCCACCATATAGAA
AACGGCAATAATGTGGACGTGATCTACCTTGACTTTAGCAAGGCTTTCGA
CAGAGTCGACCATACCATTCTTCTGAACAAAATGGCATCAAAGGCAAACT
GCTTGCTTGGATCAAATCCTTCCTAACAGGTAGAACACAACAAGATTCTG
TTGACTACACACTATCAGAAAGGTCAGAAGTCATCTCTGGTGTTCCCCAA
GGATCTGTGCTTGGTCCACTACTGTTTCTGATAATGATACAAGACATTGA
CAAAAAGATATTACACTCTTTCTTATCAGCATTTGCTGATGATACACGTC
taatgaaagaaataaaaaaccatGCTGATATCATTCAGCTCCAAGATGAC
ATGAACGCAGTCTATGAGTGGACTGGATTGAATAACATGAAATTGAATGG
ACTTAAATTTGAACATCTCAATTATGGTAGAAACGAAGAACTTAAAGAAC
TCTCCAAATATTTCTCTGATACCCAAAAGGTGATAGAGACCAAGACTACA
GTCAAAGACCTTGGGATCACTTTAGATGTGGGTATGACATATGACAATCA
TATAGAAAATGTAATCGACAAAGGCATCAGTTCATGGATATAtcgaactt
tcaaaacaagggACCCTACTGTAATGCTGACCCTATGGAAGACGTTGGCA
GTCCCTCACATTGATTACTGTTCACAGCTATGGTCACCATGCAAGAGACC
CCAAATGCAACGACTAGAACAGCTTCAAAAATCATTCCTAAATGGAATAT
TCTCTTTACAAAAACTGAACTATTgggaaaaacttaaaactctaaaacta
tACAGTCTGGAAAGACATagagaaagatatcaaatcatCTATACTTGGTA
TATCTTAGAAAAATATTCTCCAAATTTCAACCACTCTGAGAACAAAG Run BLAST on NCBI protein sequence of TCONS_00021399-protein >TCONS_00021399-protein ID=TCONS_00021399-protein|Name=TCONS_00021399-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
MIQDIDKKILHSFLSAFADDTRLMKEIKNHADIIQLQDDMNAVYEWTGLN
NMKLNGLKFEHLNYGRNEELKELSKYFSDTQKVIETKTTVKDLGITLDVG
MTYDNHIENVIDKGISSWIYRTFKTRDPTVMLTLWKTLAVPHIDYCSQLW
SPCKRPQMQRLEQLQKSFLNGIFSLQKLNYWEKLKTLKLYSLERHRERYQ
IIYTWYILEKYSPNFNHSENK Run BLAST on NCBI transcript from alignment at sc0000385:73182..74128 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021399 ID=TCONS_00021399|Name=TCONS_00021399|organism=Clytia hemisphaerica|type=transcript|length=947bp|location=Sequence derived from alignment at sc0000385:73182..74128 (Clytia hemisphaerica)
CTTTGTTCTCAGAGTGGTTGAAATTTGGAGAATATTTTTCTAAGATATAC
CAAGTATAGatgatttgatatctttctctATGTCTTTCCAGACTGTatag
ttttagagttttaagtttttcccAATAGTTCAGTTTTTGTAAAGAGAATA
TTCCATTTAGGAATGATTTTTGAAGCTGTTCTAGTCGTTGCATTTGGGGT
CTCTTGCATGGTGACCATAGCTGTGAACAGTAATCAATGTGAGGGACTGC
CAACGTCTTCCATAGGGTCAGCATTACAGTAGGGTcccttgttttgaaag
ttcgaTATATCCATGAACTGATGCCTTTGTCGATTACATTTTCTATATGA
TTGTCATATGTCATACCCACATCTAAAGTGATCCCAAGGTCTTTGACTGT
AGTCTTGGTCTCTATCACCTTTTGGGTATCAGAGAAATATTTGGAGAGTT
CTTTAAGTTCTTCGTTTCTACCATAATTGAGATGTTCAAATTTAAGTCCA
TTCAATTTCATGTTATTCAATCCAGTCCACTCATAGACTGCGTTCATGTC
ATCTTGGAGCTGAATGATATCAGCatggttttttatttctttcattaGAC
GTGTATCATCAGCAAATGCTGATAAGAAAGAGTGTAATATCTTTTTGTCA
ATGTCTTGTATCATTATCAGAAACAGTAGTGGACCAAGCACAGATCCTTG
GGGAACACCAGAGATGACTTCTGACCTTTCTGATAGTGTGTAGTCAACAG
AATCTTGTTGTGTTCTACCTGTTAGGAAGGATTTGATCCAAGCAAGCAGT
TTGCCTTTGATGCCATTTTGTTCAGAAGAATGGTATGGTCGACTCTGTCG
AAAGCCTTGCTAAAGTCAAGGTAGATCACGTCCACATTATTGCCGTTTTC
TATATGGTGGATAAGTCGTTCTGTGTGAGAGAGAAGTTGGCTCAGGC Coding sequence (CDS) from alignment at sc0000385:73182..74128 >TCONS_00021399 ID=TCONS_00021399|Name=TCONS_00021399|organism=Clytia hemisphaerica|type=CDS|length=663bp|location=Sequence derived from alignment at sc0000385:73182..74128 (Clytia hemisphaerica)
TTTGTTCTCAGAGTGGTTGAAATTTGGAGAATATTTTTCTAAGATATACC
AAGTATAGatgatttgatatctttctctATGTCTTTCCAGACTGTatagt
tttagagttttaagtttttcccAATAGTTCAGTTTTTGTAAAGAGAATAT
TCCATTTAGGAATGATTTTTGAAGCTGTTCTAGTCGTTGCATTTGGGGTC
TCTTGCATGGTGACCATAGCTGTGAACAGTAATCAATGTGAGGGACTGCC
AACGTCTTCCATAGGGTCAGCATTACAGTAGGGTcccttgttttgaaagt
tcgaTATATCCATGAACTGATGCCTTTGTCGATTACATTTTCTATATGAT
TGTCATATGTCATACCCACATCTAAAGTGATCCCAAGGTCTTTGACTGTA
GTCTTGGTCTCTATCACCTTTTGGGTATCAGAGAAATATTTGGAGAGTTC
TTTAAGTTCTTCGTTTCTACCATAATTGAGATGTTCAAATTTAAGTCCAT
TCAATTTCATGTTATTCAATCCAGTCCACTCATAGACTGCGTTCATGTCA
TCTTGGAGCTGAATGATATCAGCatggttttttatttctttcattaGACG
TGTATCATCAGCAAATGCTGATAAGAAAGAGTGTAATATCTTTTTGTCAA
TGTCTTGTATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021399-exon-sc0000385-1491911889:73182..74128 | TCONS_00021399-exon-sc0000385-1491911889:73182..74128 | Clytia hemisphaerica | exon |
| TCONS_00021399-exon-sc0000385-1510915933:73182..74128 | TCONS_00021399-exon-sc0000385-1510915933:73182..74128 | Clytia hemisphaerica | exon |
| TCONS_00021399-exon-sc0000385-1575043694:73182..74128 | TCONS_00021399-exon-sc0000385-1575043694:73182..74128 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000385 | supercontig | sc0000385:73182..74128 . |
Blast
The following BLAST results are available for this feature:
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