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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021417 ID=TCONS_00021417|Name=TCONS_00021417|organism=Clytia hemisphaerica|type=transcript|length=1186bp
TTATGGAATGTCAAAGGTGGAAATGAACAAGTCCCACAAAGACTGATTGA
AGAATCTAAATCTACTGTCCATTACAATTGCAAAATCACTTCAATTAAGA
AACTGGAGAACGAAAGCTCTGGTAAAGCTACCTATGAATTAGAATCAGAT
GCTAGCACCTTTCAATCAAACCAATACGATGCGGTTATCGTTTCAGTACC
TTTAGAAGATCCTCGCTGTTTTATTTCATGCCCAGAAATCAAAAATTGGC
CTCAGCCAACAGACCTTGGTCAATTCCAACGTTGCGTTTCAAGCATCATT
CAACAACCTATCAATGCTCAGTATTTTGGTGTCAAAGCTGCCAGCAAATT
GCCAGATGCTATCACAACCACTTGTGAAAAAGCAGCTGCTGattttggtt
ttattgaaaTCAATAAAACTGTTCACGGTAATAGAAGCGATCCTCCTACG
TACAGAGTTTTTAGTAAAGAACCTCTGACAGAGGAATCTctgagaaaatt
attcattATGGAGGAGAACACAGCACCAGAAATCTCCGTAGTTGATTGGT
TAGCCTATCCACATTATTCACCACCAGAGAAGTTTTTACCGTTCGAATTG
GACGAAGGGGTGTTTTATGTGAATGCAATTGAACGAGCAGCTTCAGCAAT
GGAGATGAGTGCTATTGGTGGACGCAATGCTGCTTTGTTAGCTGTTAACT
ATTTGGAAAATCGAAactaaaaaacctttttcttcaGCTCCTAAACTCTA
TTACGTctgaaataaaattcaaaatacctATGGTAATGGAATGAAACTTC
GCGCCGATTAAGTTCTGCGTCTGAGTAAATCCgtgaaatttttagatttc
gtttttttcaaattattataaTTATCACTAAAAGGGCTCTGACTATaatc
agaaaattgattttagtatttgaacataaaagctATGTTTTATGTtattt
aacacttttaacaaagaattgccttaataaattgctttttaatcaaattc
cttaagagtaattaagaattaaattacaaaaatgacgttatgagcCTTAA
AAAGACggtaataatatgttgcatcaacctcttttataaaaagtactaag
ttttaatgggtaattaacctttttgatttgaagttttttcaaactgtccg
caaagaattgactgttttaaattttttttttttggc Run BLAST on NCBI protein sequence of TCONS_00021417-protein >TCONS_00021417-protein ID=TCONS_00021417-protein|Name=TCONS_00021417-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
LWNVKGGNEQVPQRLIEESKSTVHYNCKITSIKKLENESSGKATYELESD
ASTFQSNQYDAVIVSVPLEDPRCFISCPEIKNWPQPTDLGQFQRCVSSII
QQPINAQYFGVKAASKLPDAITTTCEKAAADFGFIEINKTVHGNRSDPPT
YRVFSKEPLTEESLRKLFIMEENTAPEISVVDWLAYPHYSPPEKFLPFEL
DEGVFYVNAIERAASAMEMSAIGGRNAALLAVNYLENRN Run BLAST on NCBI transcript from alignment at sc0000385:387370..388555 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021417 ID=TCONS_00021417|Name=TCONS_00021417|organism=Clytia hemisphaerica|type=transcript|length=1186bp|location=Sequence derived from alignment at sc0000385:387370..388555 (Clytia hemisphaerica)
gccaaaaaaaaaaaatttaaaacagtcaattctttgcggacagtttgaaa
aaacttcaaatcaaaaaggttaattacccattaaaacttagtacttttta
taaaagaggttgatgcaacatattattaccGTCTTTTTAAGgctcataac
gtcatttttgtaatttaattcttaattactcttaaggaatttgattaaaa
agcaatttattaaggcaattctttgttaaaagtgttaaataACATAAAAC
ATagcttttatgttcaaatactaaaatcaattttctgattATAGTCAGAG
CCCTTTTAGTGATAAttataataatttgaaaaaaacgaaatctaaaaatt
tcacGGATTTACTCAGACGCAGAACTTAATCGGCGCGAAGTTTCATTCCA
TTACCATaggtattttgaattttatttcagACGTAATAGAGTTTAGGAGC
tgaagaaaaaggttttttagtTTCGATTTTCCAAATAGTTAACAGCTAAC
AAAGCAGCATTGCGTCCACCAATAGCACTCATCTCCATTGCTGAAGCTGC
TCGTTCAATTGCATTCACATAAAACACCCCTTCGTCCAATTCGAACGGTA
AAAACTTCTCTGGTGGTGAATAATGTGGATAGGCTAACCAATCAACTACG
GAGATTTCTGGTGCTGTGTTCTCCTCCATaatgaataattttctcagAGA
TTCCTCTGTCAGAGGTTCTTTACTAAAAACTCTGTACGTAGGAGGATCGC
TTCTATTACCGTGAACAGTTTTATTGAtttcaataaaaccaaaatCAGCA
GCTGCTTTTTCACAAGTGGTTGTGATAGCATCTGGCAATTTGCTGGCAGC
TTTGACACCAAAATACTGAGCATTGATAGGTTGTTGAATGATGCTTGAAA
CGCAACGTTGGAATTGACCAAGGTCTGTTGGCTGAGGCCAATTTTTGATT
TCTGGGCATGAAATAAAACAGCGAGGATCTTCTAAAGGTACTGAAACGAT
AACCGCATCGTATTGGTTTGATTGAAAGGTGCTAGCATCTGATTCTAATT
CATAGGTAGCTTTACCAGAGCTTTCGTTCTCCAGTTTCTTAATTGAAGTG
ATTTTGCAATTGTAATGGACAGTAGATTTAGATTCTTCAATCAGTCTTTG
TGGGACTTGTTCATTTCCACCTTTGACATTCCATAA Coding sequence (CDS) from alignment at sc0000385:387370..388555 >TCONS_00021417 ID=TCONS_00021417|Name=TCONS_00021417|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at sc0000385:387370..388555 (Clytia hemisphaerica)
ttagtTTCGATTTTCCAAATAGTTAACAGCTAACAAAGCAGCATTGCGTC
CACCAATAGCACTCATCTCCATTGCTGAAGCTGCTCGTTCAATTGCATTC
ACATAAAACACCCCTTCGTCCAATTCGAACGGTAAAAACTTCTCTGGTGG
TGAATAATGTGGATAGGCTAACCAATCAACTACGGAGATTTCTGGTGCTG
TGTTCTCCTCCATaatgaataattttctcagAGATTCCTCTGTCAGAGGT
TCTTTACTAAAAACTCTGTACGTAGGAGGATCGCTTCTATTACCGTGAAC
AGTTTTATTGAtttcaataaaaccaaaatCAGCAGCTGCTTTTTCACAAG
TGGTTGTGATAGCATCTGGCAATTTGCTGGCAGCTTTGACACCAAAATAC
TGAGCATTGATAGGTTGTTGAATGATGCTTGAAACGCAACGTTGGAATTG
ACCAAGGTCTGTTGGCTGAGGCCAATTTTTGATTTCTGGGCATGAAATAA
AACAGCGAGGATCTTCTAAAGGTACTGAAACGATAACCGCATCGTATTGG
TTTGATTGAAAGGTGCTAGCATCTGATTCTAATTCATAGGTAGCTTTACC
AGAGCTTTCGTTCTCCAGTTTCTTAATTGAAGTGATTTTGCAATTGTAAT
GGACAGTAGATTTAGATTCTTCAATCAGTCTTTGTGGGACTTGTTCATTT
CCACCTTTGACATTCCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021417-exon-sc0000385-1491911889:387370..388555 | TCONS_00021417-exon-sc0000385-1491911889:387370..388555 | Clytia hemisphaerica | exon |
| TCONS_00021417-exon-sc0000385-1510915933:387370..388555 | TCONS_00021417-exon-sc0000385-1510915933:387370..388555 | Clytia hemisphaerica | exon |
| TCONS_00021417-exon-sc0000385-1575043694:387370..388555 | TCONS_00021417-exon-sc0000385-1575043694:387370..388555 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000385 | supercontig | sc0000385:387370..388555 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
| GO:0030328 | prenylcysteine catabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016670 | oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor |
| GO:0016491 | oxidoreductase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| biological_process |
GO:0030328 |
prenylcysteine catabolic process |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
| molecular_function |
GO:0016670 |
oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor |
Blast
BLAST of TCONS_00021417 vs. Swiss-Prot (Human)
Match: PCYOX (Prenylcysteine oxidase 1 OS=Homo sapiens GN=PCYOX1 PE=1 SV=3) HSP 1 Score: 103.219 bits (256), Expect = 6.079e-24 Identity = 79/247 (31.98%), Postives = 123/247 (49.80%), Query Frame = 1
Query: 1 LWNVKGGNEQVPQRLIEESKSTVHYNCKITSIKKLENESSGKAT--YELESDAST-FQSNQYDAVIVSVPLEDPRCFISC----PEIKNWPQPTDLGQFQRCVSSIIQQPINAQYFGVKAASKLPDAITTTCEKAAADFGFIEINKTVHGNRSDPP-------TYRVFSKEPLTEESLRKLFIMEENTAPEISVVDWLAYPHYSPPEKFLPFELDEGVFYVNAIERAASAMEMSAIGGRNAALLAVN 699
LW V+GGN+ V L++ SKS + + +K + + +G T YE+ T +S+ YD V+V+ PL I+ P I+ + Q +Q V+++++ +N F + K T + + I I +V + DP +++FS+E LT+ + KLF+ + + WLAYPHY PPEK L + ++Y+N IE AASAMEMSAI NAALLA +
Sbjct: 247 LWAVEGGNKLVCSGLLQASKSNLISGSVMYIEEKTKTKYTGNPTKMYEVVYQIGTETRSDFYDIVLVATPLNRKMSNITFLNFDPPIEEFHQ-----YYQHIVTTLVKGELNTSIFSSRPIDKFGLNTVLTTDNSDLFINSIGIVPSVR-EKEDPEPSTDGTYVWKIFSQETLTKAQILKLFLSYDYAVKK----PWLAYPHYKPPEKCPSIILHDRLYYLNGIECAASAMEMSAIAAHNAALLAYH 483
The following BLAST results are available for this feature:
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