TCONS_00021449 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021449
Unique NameTCONS_00021449
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length596

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021449 ID=TCONS_00021449|Name=TCONS_00021449|organism=Clytia hemisphaerica|type=transcript|length=596bp
ctcgtccttcggactcgtgcaaattactattttctcctttgttactcgtg
attaatcgttaattgcactccaaaccatacgattactagtactaatccTT
TTATTTGCTTGCATACTTTTTTGTATAAACAATTTCAGAtgatgataaaa
taaaaaatgaaatatggcTGTAAACGTGACAAATATTTTATTAAATGTGT
CACATTTGAAATCACAGCTATCGGAAAAAGcgaaaaatttatccactttg
ATTGAACAGCAGTATGAGCAACTATGCAAATTGGTTGCACAAAAGGAGCA
AGCAGACGTCGAACTAAAAGAATTGGATCTGAAGAAGTCGAACCTTGATG
CTGAGATTGCCAACAAGAACAAGGTCGTTGAACGGAGACAAACGGAAGTG
AACAATAAACAGAATGATCTCAACAAAGCTGAAAATGACTATCAAGATGC
AAAAAATGATAGGGAAAAAGCTGAGAGAGCACAAAGAGCTATTAATATAG
TTATGGGTATAGTTGCCTTCGGCTTAACTCCAACTTTAGCAGCAGCAGGT
AATTACCTTTTTCTGAATCCTATAACCTTTTAAAAATTAATCAGAT
Run BLAST on NCBI

protein sequence of TCONS_00021449-protein

>TCONS_00021449-protein ID=TCONS_00021449-protein|Name=TCONS_00021449-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MAVNVTNILLNVSHLKSQLSEKAKNLSTLIEQQYEQLCKLVAQKEQADVE
LKELDLKKSNLDAEIANKNKVVERRQTEVNNKQNDLNKAENDYQDAKNDR
EKAERAQRAINIVMGIVAFGLTPTLAAAGNYLFLNPITF
Run BLAST on NCBI

transcript from alignment at sc0000386:182587..183826+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021449 ID=TCONS_00021449|Name=TCONS_00021449|organism=Clytia hemisphaerica|type=transcript|length=1240bp|location=Sequence derived from alignment at sc0000386:182587..183826+ (Clytia hemisphaerica)
ctcgtccttcggactcgtgcaaattactattttctcctttgttactcgtg
attaatcgttaattgcactccaaaccatacgattactagtactaatccTT
TTATTTGCTTGCATACTTTTTTGTATAAACAATTTCAGAtgatgataaaa
taaaaaatgaaatatggcTGTAAACGTGACAAATATTTTATTAAATGTGT
CACATTTGAAATCACAGCTATCGGAAAAAGcgaaaaatttatccactttg
ATTGAACAGCAGTATGAGCAACTATGCAAATTGGTTGCACAAAAGGAGCA
AGCAGACGTCGAACTAAAAGGTGAGTGAATGTATTCTATGAAAACTATGA
ATTAGTGGCGTCACCTTATCTAACAGTTTGCTTTGTAAGGTCAGCGTCAA
GGGAACACTCCCTAAAATTTATAGAAATGTACCAAATGGCCAAATCTAGC
TCTAAAGAGATTAGAAAACCACTTAAAATAACTCATGTTTAAATAACCTA
AGGGACATTTGTAAGGAGCTCCAATTGTAATATTATTTACTTCAAGTAAC
CGAGAGttagaatatttttaatttcaaatgcaAGGAATTAACTGTAACAT
CTTAATACGTATTATTggcgatccaaaaaaaatcTGCAATCGGATTGgct
aaaaagagtacaatatatatATTGTACGaaataaattgacgaaaagatgt
tgttgcattttAGTGGTGTAGCAGCAATCTAATGTCACTTtcctacaaaa
gtgccctgcgctttttttccaacacaaaaagtgcatttttgggtcaccga
taaaccggtTATCAGACCTTTGCttgtacaatatggaaatatttcactcg
ttcctgATTTTTTCCGCCTATAGGCTCAGAAAAAATTATACGGAAAAAtg
tcggaactcgtaaaatatttctcatattgtactcgcaactgtccgataac
tattacctATATAGAATTGGATCTGAAGAAGTCGAACCTTGATGCTGAGA
TTGCCAACAAGAACAAGGTCGTTGAACGGAGACAAACGGAAGTGAACAAT
AAACAGAATGATCTCAACAAAGCTGAAAATGACTATCAAGATGCAAAAAA
TGATAGGGAAAAAGCTGAGAGAGCACAAAGAGCTATTAATATAGTTATGG
GTATAGTTGCCTTCGGCTTAACTCCAACTTTAGCAGCAGCAGGTAATTAC
CTTTTTCTGAATCCTATAACCTTTTAAAAATTAATCAGAT

Coding sequence (CDS) from alignment at sc0000386:182587..183826+

>TCONS_00021449 ID=TCONS_00021449|Name=TCONS_00021449|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at sc0000386:182587..183826+ (Clytia hemisphaerica)
atggcTGTAAACGTGACAAATATTTTATTAAATGTGTCACATTTGAAATC
ACAGCTATCGGAAAAAGcgaaaaatttatccactttgATTGAACAGCAGT
ATGAGCAACTATGCAAATTGGTTGCACAAAAGGAGCAAGCAGACGTCGAA
CTAAAAGAATTGGATCTGAAGAAGTCGAACCTTGATGCTGAGATTGCCAA
CAAGAACAAGGTCGTTGAACGGAGACAAACGGAAGTGAACAATAAACAGA
ATGATCTCAACAAAGCTGAAAATGACTATCAAGATGCAAAAAATGATAGG
GAAAAAGCTGAGAGAGCACAAAGAGCTATTAATATAGTTATGGGTATAGT
TGCCTTCGGCTTAACTCCAACTTTAGCAGCAGCAGGTAATTACCTTTTTC
TGAATCCTATAACCTTTTAAatggcTGTAAACGTGACAAATATTTTATTA
AATGTGTCACATTTGAAATCACAGCTATCGGAAAAAGcgaaaaatttatc
cactttgATTGAACAGCAGTATGAGCAACTATGCAAATTGGTTGCACAAA
AGGAGCAAGCAGACGTCGAACTAAAAGAATTGGATCTGAAGAAGTCGAAC
CTTGATGCTGAGATTGCCAACAAGAACAAGGTCGTTGAACGGAGACAAAC
GGAAGTGAACAATAAACAGAATGATCTCAACAAAGCTGAAAATGACTATC
AAGATGCAAAAAATGATAGGGAAAAAGCTGAGAGAGCACAAAGAGCTATT
AATATAGTTATGGGTATAGTTGCCTTCGGCTTAACTCCAACTTTAGCAGC
AGCAGGTAATTACCTTTTTCTGAATCCTATAACCTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012024XLOC_012024Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021449-proteinTCONS_00021449-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021449-exon-sc0000386-1491911889:182587..182906TCONS_00021449-exon-sc0000386-1491911889:182587..182906Clytia hemisphaericaexon
TCONS_00021449-exon-sc0000386-1510915933:182587..182906TCONS_00021449-exon-sc0000386-1510915933:182587..182906Clytia hemisphaericaexon
TCONS_00021449-exon-sc0000386-1575043694:182587..182906TCONS_00021449-exon-sc0000386-1575043694:182587..182906Clytia hemisphaericaexon
TCONS_00021449-exon-sc0000386-1491911889:183551..183826TCONS_00021449-exon-sc0000386-1491911889:183551..183826Clytia hemisphaericaexon
TCONS_00021449-exon-sc0000386-1510915933:183551..183826TCONS_00021449-exon-sc0000386-1510915933:183551..183826Clytia hemisphaericaexon
TCONS_00021449-exon-sc0000386-1575043694:183551..183826TCONS_00021449-exon-sc0000386-1575043694:183551..183826Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000386supercontigsc0000386:182587..183826 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.48586	1.76332	0.846332	0.446614	1.59782	0.759924	0.121865	0.670887	0.253366	0.207051	0.285171	0.0624863	0.0704163	0.196435	0.498029	2.67232	17.8395	11.8927	3.02745	3.36424	49.497	41.6869	1.38048	2.89315	0.97152	2.97037	2.22361	2.36831	0.219118	0.346075
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021449 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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