TCONS_00021457 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021457
Unique NameTCONS_00021457
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1412

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021457 ID=TCONS_00021457|Name=TCONS_00021457|organism=Clytia hemisphaerica|type=transcript|length=1412bp
atgttcgtgacgtaatttatgaaaaggtctatcaatCACTTACATTTGTA
TTACTTGAGATTCTGATGAACACCCACAATCACGATCGTCCGCGGCACAG
AATATGTGGTACTCCAGCAAACAACTTTGGCACTGGAATGTTTGTGTTGC
CGTCAATACCGCATTACAATAGTGGTTGTGTTGGCGGCAGGTTTTATCAA
ATGATACGCCTTTCAACAAACAACAGTATTCTGTTGTTTGGTCATTAAAC
AAGAGATGAATCTTTCTCTCCGTATCTCCGAACACAAAGAGACCAGCTTC
TGTACTAATGGAAACAGATATTCCGAAGGCTAAAAATACACCAACAAGCT
CAAAAAAACCTGAGCAGTTGTTTATCTGTCATCGTTATATGTCAATACTG
GTCGTTCTATACTATGAGCAAAATATTTGTCATTATTTGTAATTACGTTT
ACAAAGGTGTCAGTTGGTCAGTTTAATCAGTTATGAGGTTCTTGCAAGTT
TTACCAAAGTTTAGACGTTTGTTGTTTTGGTGGCTTGCATGAAcagaaaa
atatgtaaaaaaatgtctTATTAATTGTCGTCTACATGAAGTCTGTAACA
AACCTGTACAGTTGTTTATCTGTCATCGTTATATGTCAATACTAGTCGTT
ATTTACCGGGTTCAACAAGAAAAGTCCATCCATGAAAATTCTGTAGTCTT
CAAAAGTAGTCAAAATATTTCATAACACAAtagacatccctgtctcataG
CCCCGGTAGAACTTCTTCTTGCAGtgaggatgaaaatttctatcgaaatc
tcaATGTGATAAAAACCCTTTTGTCCTcaggtaaaaaacaatcaaatgca
gtgaaatcaaaattaaaaaaatcatagcATCAGACTCTTGCAATATTTGA
ACCTTGCTTTTCCTATCTTTGTTCAGCTTTGTTGCATAAAAAGTTAGTCA
TTTTTTGAAGTAGACCTAAAACGgctaaaaatgaccaaaaacagcaaaaa
tgacCTAATTCACCACGTAATGCAACTCATTATCTGAGAGAGATACGCAA
AATCTGAACACAACAGCAAGGTTCAAATATTCCAAAACGCCTGGTGTCAC
TATTTTTGAAGCAGAAgaaaaacctggaaaaactacattttctttttcat
cttcattttccaaattttcaaaagtctttAATCAATTTGATTATTCTCCT
TGAAAAtacctttccaacggtgtatagtATTTTTGATATAGCATATAAAT
ACATGCTGAGAACAtttgaaaagtttattttctttctagGAGAGTCGAGT
TTCGAGTTTACATGGATTTTTGTTGAACGATGAAAATTTCTTACTAGAAT
CTATTGTTTTCTGGATTATTTGTTCTTCCAGCTCCTTCTTGTTTGTTGCA
CCAAATAAGGTT
Run BLAST on NCBI

transcript from alignment at sc0000386:55246..56838-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021457 ID=TCONS_00021457|Name=TCONS_00021457|organism=Clytia hemisphaerica|type=transcript|length=1593bp|location=Sequence derived from alignment at sc0000386:55246..56838- (Clytia hemisphaerica)
ATGTTCGTGACGTAATTTATGAAAAGGTCTATCAATCACTTACATTTGTA
TTACTTGAGATTCTGATGAACACCCACAATCACGATCGTCCGCGGCACAG
AATATGTGGTACTCCAGCAAACAACTTTGGCACTGGAATGTTTGTGTTGC
CGTCAATACCGCATTACAATAGTGGTTGTGTTGGCGGCAGGTTTTATCAA
ATGATACGCCTTTCAACAAACAACAGTATTCTGTTGTTTGGTCATTAAAC
AAGAGATGAATCTTTCTCTCCGTATCTCCGAACACAAAGAGACCAGCTTC
TGTACTAATGGAAACAGATATTCCGAAGGCTAAAAATACACCAACAAGCT
CAAAAATACCTGAAAAAAGAAATTTTTCTTTTGCATTTTCTAGGTTTATA
ATTCATCATACTTTATATTTTATCATATATTTTAGCAAATATGTCTGAAG
TTCAATTTGAGCCATAACTAAGTGATGTTAAATCATAGAGAAATAAAAAA
TGTCGCATTAATTGTCGTCTACATGAAGTCTGTAACAAACCTGAGCAGTT
GTTTATCTGTCATCGTTATATGTCAATACTGGTCGTTCTATACTATGAGC
AAAATATTTGTCATTATTTGTAATTACGTTTACAAAGGTGTCAGTTGGTC
AGTTTAATCAGTTATGAGGTTCTTGCAAGTTTTACCAAAGTTTAGACGTT
TGTTGTTTTGGTGGCTTGCATGAACAGAAAAATATGTAAAAAAATGTCTT
ATTAATTGTCGTCTACATGAAGTCTGTAACAAACCTGTACAGTTGTTTAT
CTGTCATCGTTATATGTCAATACTAGTCGTTATTTACCGGGTTCAACAAG
AAAAGTCCATCCATGAAAATTCTGTAGTCTTCAAAAGTAGTCAAAATATT
TCATAACACAATAGACATCCCTGTCTCATAGCCCCGGTAGAACTTCTTCT
TGCAGTGAGGATGAAAATTTCTATCGAAATCTCAATGTGATAAAAACCCT
TTTGTCCTCAGGTAAAAAACAATCAAATGCAGTGAAATCAAAATTAAAAA
AATCATAGCATCAGACTCTTGCAATATTTGAACCTTGCTTTTCCTATCTT
TGTTCAGCTTTGTTGCATAAAAAGTTAGTCATTTTTTGAAGTAGACCTAA
AACGGCTAAAAATGACCAAAAACAGCAAAAATGACCTAATTCACCACGTA
ATGCAACTCATTATCTGAGAGAGATACGCAAAATCTGAACACAACAGCAA
GGTTCAAATATTCCAAAACGCCTGGTGTCACTATTTTTGAAGCAGAAGAA
AAACCTGGAAAAACTACATTTTCTTTTTCATCTTCATTTTCCAAATTTTC
AAAAGTCTTTAATCAATTTGATTATTCTCCTTGAAAATACCTTTCCAACG
GTGTATAGTATTTTTGATATAGCATATAAATACATGCTGAGAACATTTGA
AAAGTTTATTTTCTTTCTAGGAGAGTCGAGTTTCGAGTTTACATGGATTT
TTGTTGAACGATGAAAATTTCTTACTAGAATCTATTGTTTTCTGGATTAT
TTGTTCTTCCAGCTCCTTCTTGTTTGTTGCACCAAATAAGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012027XLOC_012027Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021457-exon-sc0000386-1575043694:56484..56838TCONS_00021457-exon-sc0000386-1575043694:56484..56838Clytia hemisphaericaexon
TCONS_00021457-exon-sc0000386-1575043694:55246..56302TCONS_00021457-exon-sc0000386-1575043694:55246..56302Clytia hemisphaericaexon
TCONS_00021457-exon-sc0000386-1510915933:56484..56838TCONS_00021457-exon-sc0000386-1510915933:56484..56838Clytia hemisphaericaexon
TCONS_00021457-exon-sc0000386-1510915933:55246..56302TCONS_00021457-exon-sc0000386-1510915933:55246..56302Clytia hemisphaericaexon
TCONS_00021457-exon-sc0000386-1491911889:56484..56838TCONS_00021457-exon-sc0000386-1491911889:56484..56838Clytia hemisphaericaexon
TCONS_00021457-exon-sc0000386-1491911889:55246..56302TCONS_00021457-exon-sc0000386-1491911889:55246..56302Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000386supercontigsc0000386:55246..56838 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.315906	0	0.507396	0	0.407041	0.606246	0.706042	0.3659	0.417743	0.257956	0.0708583	0.144819	0	0.0112261	0.287483	0	0	0	0	0	0.730001	0	0.528255	0	0.0427097	0.306669	0	0	0.00023498	5.19969e-10
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021457 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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