TCONS_00021472 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021472
Unique NameTCONS_00021472
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length358

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021472 ID=TCONS_00021472|Name=TCONS_00021472|organism=Clytia hemisphaerica|type=transcript|length=358bp
CTGTTCGAAAGATAGGTGATATCTTTTATAACCATGGATTTTAAAACGCA
ATGGTTATTTTCTGAttaaaaaatcagtttcattagTTTTGATAAAGACC
TAATAGGTCTGGTAGTATATATTTGAAACAAtgagaaaatataattttca
gatTGTGGTTTTTTCCAGCGTCCAGTGCAATGAGGAAATAAGAGGGATAC
AAATTAACTCTGGAGAAATTACCCTACCACAGTGTTGCAACCAGGTTTTG
TAACTATGGACggaatttgttaaaaaatcttTGGTCAGAAATAGCGTATT
TGTATCTCAGCTGGACGGAAAAGTTACAACACTGCTACCACCTTGCAGGA
CATACCAC
Run BLAST on NCBI

transcript from alignment at sc0000386:48142..48499

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021472 ID=TCONS_00021472|Name=TCONS_00021472|organism=Clytia hemisphaerica|type=transcript|length=358bp|location=Sequence derived from alignment at sc0000386:48142..48499 (Clytia hemisphaerica)
GTGGTATGTCCTGCAAGGTGGTAGCAGTGTTGTAACTTTTCCGTCCAGCT
GAGATACAAATACGCTATTTCTGACCAaagattttttaacaaattccGTC
CATAGTTACAAAACCTGGTTGCAACACTGTGGTAGGGTAATTTCTCCAGA
GTTAATTTGTATCCCTCTTATTTCCTCATTGCACTGGACGCTGGAAAAAA
CCACAatctgaaaattatattttctcaTTGTTTCAAATATATACTACCAG
ACCTATTAGGTCTTTATCAAAActaatgaaactgattttttaaTCAGAAA
ATAACCATTGCGTTTTAAAATCCATGGTTATAAAAGATATCACCTATCTT
TCGAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012038XLOC_012038Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021472-exon-sc0000386-1491911889:48142..48499TCONS_00021472-exon-sc0000386-1491911889:48142..48499Clytia hemisphaericaexon
TCONS_00021472-exon-sc0000386-1510915933:48142..48499TCONS_00021472-exon-sc0000386-1510915933:48142..48499Clytia hemisphaericaexon
TCONS_00021472-exon-sc0000386-1575043694:48142..48499TCONS_00021472-exon-sc0000386-1575043694:48142..48499Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000386supercontigsc0000386:48142..48499 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.952422	1.39314	1.07838	0.527514	2.24769	2.02989	3.06122	2.2927	0.601941	0.994135	1.4474	2.0615	1.42521	0.822274	0.405613	1.59604	0.893725	2.01529	0.253111	1.85404	0.920856	1.68435	0.546014	0.992813	0	0.912623	0.65298	1.39376	2.37851	0.538516
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021472 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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