TCONS_00021522 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021522
Unique NameTCONS_00021522
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1806

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021522 ID=TCONS_00021522|Name=TCONS_00021522|organism=Clytia hemisphaerica|type=transcript|length=1806bp
ATTTGTTATAAGTAGTATGAAAACAAAATCCAATTACAAGCAGACAGATT
GAGAAGAGAAAGAAAAGTGGAGGCAGGCGAAGCAGGGCGAAGCAGTGATA
TGGAATCAAAAGGACAAGAACTAGAACAAATGGATGAAGTCACGTCAACT
GAAGACTTAGTCGATGGACCCCCAGGAAGCCAACCAAGGAATTCACCTTC
TCCAATCAAAGtttttgcaaaattcttgaATCGCGGAACAGCTACAAAAC
AAGCAGCAAATCTAGAAGCAGAAGGGTACCAAGAAAAAGATTTGTACGAA
TCTCTcatcgaagaagaaaaaaaactattaGCTGCTGGAAAACAAAATCC
TAAAGATGCAAAGAAAAGAACACCAAATTCACCTGAGAACATATTCTTAA
CAAAGACTATTCCGAAATCTGAAAAGGTGACAAGAGAATACTGCTATCCA
GACAGCAAACCAATACATGAAGAGTTTGTAACCAGTCATGTATCATTTTG
GCCAAAACATATTGATAGAGATGATGGAGTATATTCCAACACATATTCCG
ATAATTTTTACCAGTTGGATAATAAAGTGCCGCTTGGTAAATTGCTCTTA
ATCAacatcaaatattttgatttcgaTGAATCAAAATTGCCTTCGATGCC
AACAAGAAATGGCTCTGACGAGGATGCagcaaatttgacaaaattgtTTC
TCAACCTAGGATTCCAAGTAGAGCGCTTGGATAATCCGAATAAGAAGCAG
ATCAATGTTTTTATGGATGAGGAGCTCACTgaagagaaaatgaaagaaag
ttcCATAGCTGCATTTGCCATTCTCACTCATGGAGAAGATGGAATCGTCT
ATGCAAGAGATGTCAAAATTCGCATTGAAAATCTTGTTAAGAAATTCAAG
CTTAAATGTCTTGCTGGTAAACCAAAGCTTTTTATTGTGCAAGCATGCCG
TGGTGATGTTTACATGCCACAAAACAAAGATGAAGTCGACGGTAAAGGAA
CTAAAGAGACTACTCAGTACAATCTTGGTTTGCCGAGTGAAGCAGATTTC
CTGTACGCCTATTCGACAGTGGCTGGATATTATTCATGGCGACAAAGTCG
TAACGGAAGTTGGTTTATACAGGATTTAGTCAAGATTTTTAATGATAACT
TTCGTAGAATGGATGCTGCGCGCATGCTTGTTAAAGTCAGTTTTGCTGTT
GCTGAACGGTTCTCAGAAACTCGCCGTGGCGAAATATCTAACGATAAGAA
ACAAGTTCCATCTTATATTTCACAATTAagaaaagatttgtttttatttc
caaCGAATGGGCCATAGGAAATCGGACAGTCGGAATAAATCCAATAATTA
ATTACGCTATCAAGTACAAAGTTTGTGGCGAAGACTTTTAGATCATCCAC
AATATGTACAACACAACATATAATTACCGTTAAACAATTTGTAGTTTTAA
AATTAATATTTCCATGCATTCACTAAAGATTATATAATGATAATtgtctt
taaaggttttatttttacataagttttcccgtttcatatcagacacgtat
ttcatatcaggacagtgtctacctattgttgTATTATGCTGATGTTAGCA
AAAAAGCGTTTAACTCTTTTCCTCTTTAttaccaatcttgctccacatcc
gtgtcaatccaatgtgaaaaggcttgtgaattaaaattgatgagtaagca
aatgatatcactcttatttaaaaacaaaacctaagTTCTGCAAATGGTAA
CGAAAACAACCTGCAAATACAAgcactggcggatttaagacaatagagca
agtgcg
Run BLAST on NCBI

protein sequence of TCONS_00021522-protein

>TCONS_00021522-protein ID=TCONS_00021522-protein|Name=TCONS_00021522-protein|organism=Clytia hemisphaerica|type=polypeptide|length=405bp
MESKGQELEQMDEVTSTEDLVDGPPGSQPRNSPSPIKVFAKFLNRGTATK
QAANLEAEGYQEKDLYESLIEEEKKLLAAGKQNPKDAKKRTPNSPENIFL
TKTIPKSEKVTREYCYPDSKPIHEEFVTSHVSFWPKHIDRDDGVYSNTYS
DNFYQLDNKVPLGKLLLINIKYFDFDESKLPSMPTRNGSDEDAANLTKLF
LNLGFQVERLDNPNKKQINVFMDEELTEEKMKESSIAAFAILTHGEDGIV
YARDVKIRIENLVKKFKLKCLAGKPKLFIVQACRGDVYMPQNKDEVDGKG
TKETTQYNLGLPSEADFLYAYSTVAGYYSWRQSRNGSWFIQDLVKIFNDN
FRRMDAARMLVKVSFAVAERFSETRRGEISNDKKQVPSYISQLRKDLFLF
PTNGP
Run BLAST on NCBI

transcript from alignment at sc0000388:159977..161782

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021522 ID=TCONS_00021522|Name=TCONS_00021522|organism=Clytia hemisphaerica|type=transcript|length=1806bp|location=Sequence derived from alignment at sc0000388:159977..161782 (Clytia hemisphaerica)
cgcacttgctctattgtcttaaatccgccagtgcTTGTATTTGCAGGTTG
TTTTCGTTACCATTTGCAGAActtaggttttgtttttaaataagagtgat
atcatttgcttactcatcaattttaattcacaagccttttcacattggat
tgacacggatgtggagcaagattggtaaTAAAGAGGAAAAGAGTTAAACG
CTTTTTTGCTAACATCAGCATAATAcaacaataggtagacactgtcctga
tatgaaatacgtgtctgatatgaaacgggaaaacttatgtaaaaataaaa
cctttaaagacaATTATCATTATATAATCTTTAGTGAATGCATGGAAATA
TTAATTTTAAAACTACAAATTGTTTAACGGTAATTATATGTTGTGTTGTA
CATATTGTGGATGATCTAAAAGTCTTCGCCACAAACTTTGTACTTGATAG
CGTAATTAATTATTGGATTTATTCCGACTGTCCGATTTCCTATGGCCCAT
TCGttggaaataaaaacaaatcttttctTAATTGTGAAATATAAGATGGA
ACTTGTTTCTTATCGTTAGATATTTCGCCACGGCGAGTTTCTGAGAACCG
TTCAGCAACAGCAAAACTGACTTTAACAAGCATGCGCGCAGCATCCATTC
TACGAAAGTTATCATTAAAAATCTTGACTAAATCCTGTATAAACCAACTT
CCGTTACGACTTTGTCGCCATGAATAATATCCAGCCACTGTCGAATAGGC
GTACAGGAAATCTGCTTCACTCGGCAAACCAAGATTGTACTGAGTAGTCT
CTTTAGTTCCTTTACCGTCGACTTCATCTTTGTTTTGTGGCATGTAAACA
TCACCACGGCATGCTTGCACAATAAAAAGCTTTGGTTTACCAGCAAGACA
TTTAAGCTTGAATTTCTTAACAAGATTTTCAATGCGAATTTTGACATCTC
TTGCATAGACGATTCCATCTTCTCCATGAGTGAGAATGGCAAATGCAGCT
ATGgaactttctttcattttctcttcAGTGAGCTCCTCATCCATAAAAAC
ATTGATCTGCTTCTTATTCGGATTATCCAAGCGCTCTACTTGGAATCCTA
GGTTGAGAAacaattttgtcaaatttgctGCATCCTCGTCAGAGCCATTT
CTTGTTGGCATCGAAGGCAATTTTGATTCAtcgaaatcaaaatatttgat
gtTGATTAAGAGCAATTTACCAAGCGGCACTTTATTATCCAACTGGTAAA
AATTATCGGAATATGTGTTGGAATATACTCCATCATCTCTATCAATATGT
TTTGGCCAAAATGATACATGACTGGTTACAAACTCTTCATGTATTGGTTT
GCTGTCTGGATAGCAGTATTCTCTTGTCACCTTTTCAGATTTCGGAATAG
TCTTTGTTAAGAATATGTTCTCAGGTGAATTTGGTGTTCTTTTCTTTGCA
TCTTTAGGATTTTGTTTTCCAGCAGCtaatagttttttttcttcttcgat
gAGAGATTCGTACAAATCTTTTTCTTGGTACCCTTCTGCTTCTAGATTTG
CTGCTTGTTTTGTAGCTGTTCCGCGATtcaagaattttgcaaaaaCTTTG
ATTGGAGAAGGTGAATTCCTTGGTTGGCTTCCTGGGGGTCCATCGACTAA
GTCTTCAGTTGACGTGACTTCATCCATTTGTTCTAGTTCTTGTCCTTTTG
ATTCCATATCACTGCTTCGCCCTGCTTCGCCTGCCTCCACTTTTCTTTCT
CTTCTCAATCTGTCTGCTTGTAATTGGATTTTGTTTTCATACTACTTATA
ACAAAT

Coding sequence (CDS) from alignment at sc0000388:159977..161782

>TCONS_00021522 ID=TCONS_00021522|Name=TCONS_00021522|organism=Clytia hemisphaerica|type=CDS|length=1218bp|location=Sequence derived from alignment at sc0000388:159977..161782 (Clytia hemisphaerica)
CTATGGCCCATTCGttggaaataaaaacaaatcttttctTAATTGTGAAA
TATAAGATGGAACTTGTTTCTTATCGTTAGATATTTCGCCACGGCGAGTT
TCTGAGAACCGTTCAGCAACAGCAAAACTGACTTTAACAAGCATGCGCGC
AGCATCCATTCTACGAAAGTTATCATTAAAAATCTTGACTAAATCCTGTA
TAAACCAACTTCCGTTACGACTTTGTCGCCATGAATAATATCCAGCCACT
GTCGAATAGGCGTACAGGAAATCTGCTTCACTCGGCAAACCAAGATTGTA
CTGAGTAGTCTCTTTAGTTCCTTTACCGTCGACTTCATCTTTGTTTTGTG
GCATGTAAACATCACCACGGCATGCTTGCACAATAAAAAGCTTTGGTTTA
CCAGCAAGACATTTAAGCTTGAATTTCTTAACAAGATTTTCAATGCGAAT
TTTGACATCTCTTGCATAGACGATTCCATCTTCTCCATGAGTGAGAATGG
CAAATGCAGCTATGgaactttctttcattttctcttcAGTGAGCTCCTCA
TCCATAAAAACATTGATCTGCTTCTTATTCGGATTATCCAAGCGCTCTAC
TTGGAATCCTAGGTTGAGAAacaattttgtcaaatttgctGCATCCTCGT
CAGAGCCATTTCTTGTTGGCATCGAAGGCAATTTTGATTCAtcgaaatca
aaatatttgatgtTGATTAAGAGCAATTTACCAAGCGGCACTTTATTATC
CAACTGGTAAAAATTATCGGAATATGTGTTGGAATATACTCCATCATCTC
TATCAATATGTTTTGGCCAAAATGATACATGACTGGTTACAAACTCTTCA
TGTATTGGTTTGCTGTCTGGATAGCAGTATTCTCTTGTCACCTTTTCAGA
TTTCGGAATAGTCTTTGTTAAGAATATGTTCTCAGGTGAATTTGGTGTTC
TTTTCTTTGCATCTTTAGGATTTTGTTTTCCAGCAGCtaatagttttttt
tcttcttcgatgAGAGATTCGTACAAATCTTTTTCTTGGTACCCTTCTGC
TTCTAGATTTGCTGCTTGTTTTGTAGCTGTTCCGCGATtcaagaattttg
caaaaaCTTTGATTGGAGAAGGTGAATTCCTTGGTTGGCTTCCTGGGGGT
CCATCGACTAAGTCTTCAGTTGACGTGACTTCATCCATTTGTTCTAGTTC
TTGTCCTTTTGATTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012068XLOC_012068Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021522-proteinTCONS_00021522-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021522-exon-sc0000388-1491911889:159977..161782TCONS_00021522-exon-sc0000388-1491911889:159977..161782Clytia hemisphaericaexon
TCONS_00021522-exon-sc0000388-1510915933:159977..161782TCONS_00021522-exon-sc0000388-1510915933:159977..161782Clytia hemisphaericaexon
TCONS_00021522-exon-sc0000388-1575043694:159977..161782TCONS_00021522-exon-sc0000388-1575043694:159977..161782Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000388supercontigsc0000388:159977..161782 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0666548	0.130051	0.414981	0.332478	0.209853	0.225627	0.443678	0.7653	3.49133	8.87715	6.6613	3.26999	17.4767	14.4141	24.3181	14.8818	5.64001	5.6165	16.2296	20.6571	1.70017	1.16498	4.28091	6.32151	27.6201	34.9744	25.5425	49.9603	28.9648	15.484
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015917Pept_C14A
IPR033139Caspase_cys_AS
IPR002138Pept_C14_p10
IPR001309Pept_C14_p20
IPR029030Caspase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008234cysteine-type peptidase activity
GO:0004197cysteine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004197 cysteine-type endopeptidase activity
molecular_function GO:0008234 cysteine-type peptidase activity
Blast
[Close]
BLAST of TCONS_00021522 vs. Swiss-Prot (Human)
Match: CASP3 (Caspase-3 OS=Homo sapiens GN=CASP3 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 3.056e-42
Identity = 96/273 (35.16%), Postives = 147/273 (53.85%), Query Frame = 1 
Query:  502 PKHIDRDDGVYSNTYSDNFYQLDNKVPLGKLLLINIKYFDFDESKLPSMPTRNGSDEDAANLTKLFLNLGFQVERLDNPNKKQINVFMDEELTEEKMKESSIAAFAILTHGEDGIVYARDVKI---RIENLVKKFKLKCLAGKPKLFIVQACRGDVYMPQNKDEVD-GKGTKETTQYNLG---LPSEADFLYAYSTVAGYYSWRQSRNGSWFIQDLVKIFNDNFRRMDAARMLVKVSFAVAERFSETRRGEISNDKKQVPSYISQLRKDLFLF 1299
            PK I   + + S    DN Y++D    +G  ++IN K F     K   M +R+G+D DAANL + F NL ++V   ++  +++I   M +   E+  K SS     +L+HGE+GI++  +  +   +I N  +  + + L GKPKLFI+QACRG         E+D G  T      ++    +P EADFLYAYST  GYYSWR S++GSWFIQ L  +      +++   +L +V+  VA  F         + KKQ+P  +S L K+L+ +
Sbjct:   18 PKIIHGSESMDSGISLDNSYKMDYP-EMGLCIIINNKNF----HKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVC-VLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGT--------ELDCGIETDSGVDDDMACHKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATFHAKKQIPCIVSMLTKELYFY 276
The following BLAST results are available for this feature:
BLAST of TCONS_00021522 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CASP33.056e-4235.16Caspase-3 OS=Homo sapiens GN=CASP3 PE=1 SV=2[more]
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