TCONS_00021552 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021552
Unique NameTCONS_00021552
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3311

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021552 ID=TCONS_00021552|Name=TCONS_00021552|organism=Clytia hemisphaerica|type=transcript|length=3311bp
CAATCTAACCTGCTTAAATGTTTTGAAGATGTTGCAGCAGTAAAAATGTC
AATAATACAATCTGAATGAATTTCTGAAGGCAATAATGGCACTTTCAAGA
AAAGCCAAACAAAAAGGTCTTGAATTAATGAACAGAGGTCGAACCAAAAA
CAATCATTCATCATCAGATGCAAATGAAGCACCAAAGGATTGTGTAGTTT
GTTTGGATAAAGTGAATGTTAGAGGTGTCATCATTTGTGCACActggttt
tgttttgtttgcatTCATGAGTGGTCAAAGaaaacaaatACTTGCCCACT
GTGTAAACAAAGGTTCCGATGTATTACAAAGGTGACAGTAGGTAAACCTT
ACATTCCCACTCAAAAAGTACGTATCAAGGACAAGAACCAGAGTAACATC
AGTTTTGCTGAAGACGATTATGAAGTAGCAATGGGTCTAATTGCAGAAGA
TTCTTTGTCCGAAGACACCGATAATGACCCTGATGAAAGCTTCACGCCAA
GTTACAATATTCCCACTGTCAGAGGTCGAGCCATCAGATTAAGATCAGGT
CGAACAACATCTACAGCCTCATCTTTAATAACAAATTATACAACCAGACA
TGCACAACTTAGTAGTAGCGATCAGCGACAACAGAGCTCAAGGGAAAGAC
AAACCAGAGCTGCTAGGAGACAACAATTGACAGAAGAGCAAGAAACAGAT
GCTTCTGAAGATGAATTTGTAGCTCCTCTTGATAACGATGATGTTAATGA
TGACGATGATGCATTTGAGGAACCAAGTGCAGCTTCAACAACAACTTCAG
CAGTTAGGCAGGATGTGCAGGATTTACCAATAAACAATGACAATGAGAGC
GATTCAGTGCAAAACAGTTCCAATGATGAAGCAGAAGCTGTAGAAGAAga
taaacattccattgaaactGTTTCTTCGCAATCCAGctcAATCTTAATTT
CTTCAACAGTAATAAAGCCTCCCAAACGAAGAAAGAAGCGTAAAAGTATC
AGATATTGTCCAAAGGTTGACAAAAGAAGATCTTCAGGTTCGACACGAGA
ACAATGGATTGATATGAGTCACAAACAAACTACTTCAAGAACAAGAACTA
TAAAACCAAGGAGACCAAGCATCACAACCCCTTCAACCTCATCCAATTCC
AAGAAATATCCAAGTCGTGTCGGTCGAGATCAAGCAATGGAGAAAATTAG
GAGACAAAACAGAATGGTTCAAATGTCAATGACAACATTCGTATCTCAAT
ATTCACCAGAGAATGAAGAACAAAATTCATCCAGTGAGGAAGATTGCGAA
TCTTCTGAAGAAGAAGATAGAACGGAATTAGAATCAAAAGATAGTCATGA
TAACCAACAAGGCTCTTCGAGGAGAGGAGAGGAGTTACCTGGTAGAAATG
TTGCGAGCTCTAGCAGTTGTAAGATTGCAAATGATATGAAAAAACGCATA
GAAGTATTACTGTCTTCAGATGAAGATCAACACTCTAATAATGAAAATTC
CGACGAAGATCTAAGCATGATTGAGCCAGTTACTACAAGATCAAAACGAC
TTAAACGTCTGCAACTTTTACCTGACAGCAGTTTCGAACAAGAAGACTCG
CCTGTGCGTAAACCTCCCCCCAGGAAATGcaatgaaaagaaaactatttT
AACATCAGATGATCTAGCCTCACCTATTCCACTATCAACACATTCATCAC
CAGCAAGCAATACAGCCATCACAAGATCTTcagaaaataagagaaaatta
TGTGATTTTGAAATAAAGTTTGATGAAAGTTCTGAAAGCACGGTGGAGAT
CACACACCCTAAAATATCTGATCAACATAAGACAACACCTCCTAAGAGAC
AATACAAATTCCGCAAAATCAAACATGATGATAACAATGAACCTAAAATG
ATGGCATCTGGGAAATCGGGGATTTGCACAACAAGACCTTCTTTATGGAG
TACTGTGAATGACAGCAAAGAAAACAAACTTGCAATAGAATCATCTTCCT
GTTCCAATATAATTTATTCTGGTGTAAACCAAAGTAAACCTTCCAGTTCC
AGAGATGCTAGCTCTTTAAAAAACAAAGAGAATATAGTGACCAAACTGGA
TAACAGAGGGAAAAGCATCAATATTTCAATTCAAGATGATTCAGTCCAGG
ATGACTGTATTTTCGCGTCTGTTTTACACACACCATCGGCCGTGAACGAC
ATTCTTAATGATTTCAACTGGGACTCGAATTCACTTGACGAGACAGTATC
TCCATGTGTTTTATCGCAAAAGTCAACTTGTACTGATAGAGTTGCAACCA
CTCCAAAGGAAAATCCAAACTCATCCAAAACAGGTAGAAAGTCTACAAAT
TGCATAGAGGGACAAAAGAATTTCGAAACCTCCACGACTTGTAGAAAAAC
TATAATTGAGGAGACACCTCTGAAAGATATGGTTAAGAAATCTAAAGCTG
ATATTAGTCCTATTTCACCGTTTGGAGATAAGAAAGcattcaattttcga
aaattcagaaGAACTTTCCGCCATTATAGTCCTGTTTCTAGAGATTCAAT
TATCATTTGTACCACTCCTTGATGGTATTGGCTTTTGATTGTttcattaa
tttattgtttGACTGGTTATTTGGATGTTGCTTTGTTTGAGAGTTccttg
aaaatgtttttctatgtaattattttttatCCATTGTAATtaataaaata
ctaatttagaaaagttatttatttgctgaatacacgcttttcttttataa
aagtggtgtttttcatttcatcatggatgaaattaattttctggggaaaa
taatcctaaaaatctTCTTACAACATTTTTATAAGTAAGAATTGAACATG
TTATACGAACCTAAAGCATAacatggcatttttgtgaaagaaggtaattg
gtaatttatagttttaaaatgttctaaaaatggAATTCTTGGCATATTTT
GCCAAATTCTATGTATGATCGTGATATTCTGGcacattcttaattttttg
gccaattttatcATGAATATTCGTAAATGAGTAAATTATCAAAGGAAAAA
CTCATTCTTCGACCCAAGTTTGACAAGACCTAGGTCGAAAAAACTTGTAA
CTGGGTATTTTGCCAGAACTGTTGAACAACTTCTTTCTTAAATTTGGTCG
GTCTTTTAATAAAAGTTGCAAATACCTTTGTAGCTTTTGATGCAGGTCAT
TTTGTCAGTACTAAATCTCCAAATGAAAACTTTGTAGATTTGTCCATGGT
AGAATTTATTAATTTGTCAGCTGATATTTATTTATTCCtacacaaaattt
caaaaatgttc
Run BLAST on NCBI

transcript from alignment at sc0000389:102817..108181-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021552 ID=TCONS_00021552|Name=TCONS_00021552|organism=Clytia hemisphaerica|type=transcript|length=5365bp|location=Sequence derived from alignment at sc0000389:102817..108181- (Clytia hemisphaerica)
CAATCTAACCTGCTTAAATGTTTTGAAGATGTTGCAGCAGGTAACAATGA CTAATAGTTTCTCCCCTAAGATAAGATAGATTGTCCTAGAAATGTTTTGA GCAGATTTTTGAAACCTAAATAAACTTATTTAGTGTCAACATTTTCTTGA TATCAGCTTCCCAAAATCTTTTGATATCTGCTTTTTTTAAATCTACTTTT TTTAAGTTTGGTTTTGTACCGGGTGCACCATAAATATAGAAGTATAAAAA GTATTCTTTTTTCCAATGGCTAACTCCACCTATGCCCATTGTTTTATTTA GTAAAAATGTCAATAATACAATCTGAATGAATTTCTGAAGGCAATAATGG CACTTTCAAGAAAAGCCAAACAAAAAGGTCTTGAATTAATGAACAGAGGT CGAACCAAAAACAATCATTCATCATCAGATGCAAATGAAGCACCAAAGGA TTGTGTAGTTTGTTTGGATAAAGTGAATGTTAGAGGTGTCATCATTTGTG CACACTGGTTTTGTTTTGTTTGCATTCATGAGTGGTCAAAGGTAAATAGA TATTTGTTGACACTTTCATCTTTCGTTTCTTCCTTGTAATGCATAGTAAC AATATAGAAAGAACAGAACACAGCTCATTTAAATGAAAACCCTTGGACAG ATTTTCTTTGCTTAGTTCAGACCCCCCCCCCTTTCTTAAGGGTGAGGGGT GACACCTTCCACAAAAATGAGGAAGGGGGCGGTCAGAAATTTTCATGAAA AAGGGGGGGGGATAGTTTAAGAAGGAATTTTATTTTTCCTAAACCATTCA ATCCATACAGTCAATTTATTTGTATATTTTCACTTTTTTAGAAAACAAAT ACTTGCCCACTGTGTAAACAAAGGTTCCGATGTATTACAAAGGTATTGCA ATTTTTATATTTGTATTAATTGATTAAAAATGAGACGTGTATATTTTGGT ACTCAGAGTTTCATGCCGCCCGTATTGAGGACAATTATCAGCCAAATAAA TTACGTTTTTTAAAAATACAAAATTCAATAAGGTATATTTAATAATTAGT GTATAATAATGGTATTTATAACTTATATATACAGACAACGCTAAAGACTC TGGGTCAAGTGGGATTTTAAAATTGAATTAGAAAATACCAAATATCTTTT CTTTACAGTAAATAATTCTTGTTTTCCAGGTGACAGTAGGTAAACCTTAC ATTCCCACTCAAAAAGTACGTATCAAGGACAAGAACCAGAGTAACATCAG TTTTGCTGAAGACGATTATGAAGTAGCAATGGGTCTAATTGCAGAAGATT CTTTGTCCGAAGACACCGATAATGACCCTGATGAAAGCTTCACGCCAAGT TACAATATTCCCACTGTCAGAGGTCGAGCCATCAGATTAAGATCAGGTCG AACAACATCTACAGCCTCATCTTTAATAACAAATTATACAACCAGACATG CACAACTTAGTAGTAGCGATCAGCGACAACAGAGCTCAAGGGAAAGACAA ACCAGAGCTGCTAGGAGACAACAATTGACAGAAGAGCAAGAAACAGATGC TTCTGAAGATGAATTTGTAGCTCCTCTTGATAACGATGATGTTAATGATG ACGATGATGCATTTGAGGAACCAAGTGCAGCTTCAACAACAACTTCAGGT TTTATTAAAATGTTTTATGTGGTATTTTTGCTAGCATACATTTCCAAGTG TTAGACTTTATGTATTCAAAATATTATAATTCTGCTGTTTGTACAAATCA TACCTTACTTATATCATAATATTTTACTTTCGTTATTTTCAGCAGTTAGG CAGGATGTGCAGGATTTACCAATAAACAATGACAATGAGAGCGATTCAGT GCAAAACAGTTCCAATGATGAAGCAGAAGCTGTAGAAGAAGATAAACATT CCATTGAAACTGTTTCTTCGCAATCCAGGTATACGTCCCTTTTCATTAAT ACAAAGCTCCTAGAAAGATTTCAAGACAAATTTTCTTTTTAAATTATCCA TTGGTTTTTTCTTGGTAAAGTGACTGCTAGACTGTCGTGATTTATTTTCA GTCAGCTTTCAAGTTAATTGAAATTGTCCATGTTTTTTTTTCAGCTCAAT CTTAATTTCTTCAACAGTAATAAAGCCTCCCAAACGAAGAAAGAGTAAGA ATTTTCTAAAATTTCATTTTGTTTTAAGTTTGTCTCACAGAGTTTCTTGA TTGTAGACTACCTTATTGGAACTAATTTTCGCGGGAACTAATTTTCGCGG TCGGAAAAAAATATATCAGAAAAATTGCATTTCGCGGGTTCTAATTTTCG CGGTTTTTTTCATTCTGGAATTTTGGCGGGTTTTAATTTTCGCGGTTTTG CCCTTTTTTGGACAAATTTCTTTCATTTTCCTAGGGATTTTTCAAATTTT TCAATAAAATTGGAAAAAGCTGTATTTCGCGGGAATTAATTTTCGCGGCT TTCAACTCTCAAATTTTTTCGCGGGATCAAATTTTCGCGATTTTGACGAA AAACTGCGAAAAACGCTAAAATTAAAACCCGCAAAAATTAGTTCCAATAA GGTAAAGCTTGTCAATTTTGGGTTTTTGGTTTGATTTGCATGCTATGTCT CACTCAGGGCCAAAACGTCTCTTCTCTTCCTCTAAGCGCTCAACTGAATA TTGCATTAGTTTGGCCAAAGTTGTTAGGCAAAAAGTTATGGTGGCTAATG AAGCTATATTTTTACCTTAGGAATGGTTTTTGTAACAATCTACCGTTTTG TCTGTTGTCTCCAATTGTCTTTAAAATTCAAACATCTTTTTCAAATATTC AGAGCGTAAAAGTATCAGATATTGTCCAAAGGTTGACAAAAGAAGATCTT CAGGTTCGACACGAGAACAATGGATTGATATGAGTCACAAACAAACTACT TCAAGAACAAGGTCAGAATTAAATTTTATTCAATGTTCTGAGTATCCAGT CTTCTAATCATACTAAATACCTGGGAATGGTCGATTTCCCAACAATGACT TTGTGGAATGATAAAAAAGCCGGTCAAATTCTTTTCATTAAAGAGGATGA AACGTTAATTTTCAATTTTCTACCTCTTAAGTTATTTCCAGGTTATTACT TTAAATTATTGTCTTTCAATCCTTGTCTTCTCATTTTCAATCAAAGTAGA ACTATAAAACCAAGGAGACCAAGCATCACAACCCCTTCAACCTCATCCAA TTCCAAGAAATATCCAAGTCGTGTCGGTCGAGATCAAGCAATGGAGAAAA TTAGGAGACAAAACAGAATGGTTCAAATGTCAATGACAACATTCGTATCT CAATATTCACCAGAGAATGAAGAACAAAATTCATCCAGTGAGGAAGATTG CGAATCTTCTGAAGAAGAAGATAGAACGGAATTAGAATCAAAAGATAGTC ATGATAACCAACAAGGCTCTTCGAGGAGAGGAGAGGAGTTACCTGGTAGA AATGTTGCGAGCTCTAGCAGTTGTAAGATTGCAAATGATATGAAAAAACG CATAGAAGTATTACTGTCTTCAGATGAAGATCAACACTCTAATAATGAAA ATTCCGACGAAGATCTAAGCATGATTGAGCCAGTTACTACAAGATCAAAA CGACTTAAACGTCTGCAACTTTTACCTGACAGCAGTTTCGAACAAGAAGA CTCGCCTGTGCGTAAACCTCCCCCCAGGAAATGCAATGAAAAGAAAACTA TTTTAACATCAGATGATCTAGCCTCACCTATTCCACTATCAACACATTCA TCACCAGCAAGCAATACAGCCATCACAAGATCTTCAGAAAATAAGAGAAA ATTATGTGATTTTGAAATAAAGTTTGATGAAAGTTCTGAAAGCACGGTGG AGATCACACACCCTAAAATATCTGATCAACATAAGACAACACCTCCTAAG AGACAATACAAATTCCGCAAAATCAAACATGATGATAACAATGAACCTAA AATGATGGCATCTGGGAAATCGGGGATTTGCACAACAAGACCTTCTTTAT GGAGTACTGTGAATGACAGCAAAGAAAACAAACTTGCAATAGAATCATCT TCCTGTTCCAATATAATTTATTCTGGTGTAAACCAAAGTAAACCTTCCAG TTCCAGAGATGCTAGCTCTTTAAAAAACAAAGAGAATATAGTGACCAAAC TGGATAACAGAGGGAAAAGCATCAATATTTCAATTCAAGATGATTCAGTC CAGGATGACTGTATTTTCGCGTCTGTTTTACACACACCATCGGCCGTGAA CGACATTCTTAATGATTTCAACTGGGACTCGAATTCACTTGACGAGACAG TATCTCCATGTGTTTTATCGCAAAAGTCAACTTGTACTGATAGAGTTGCA ACCACTCCAAAGGAAAATCCAAACTCATCCAAAACAGGTAGAAAGTCTAC AAATTGCATAGAGGGACAAAAGAATTTCGAAACCTCCACGACTTGTAGAA AAACTATAATTGAGGAGACACCTCTGAAAGATATGGTTAAGAAATCTAAA GCTGATATTAGTCCTATTTCACCGTTTGGAGATAAGAAAGCATTCAATTT TCGAAAATTCAGAAGAACTTTCCGCCATTATAGTCCTGTTTCTAGAGATT CAATTATCATTTGTACCACTCCTTGATGGTATTGGCTTTTGATTGTTTCA TTAATTTATTGTTTGACTGGTTATTTGGATGTTGCTTTGTTTGAGAGTTC CTTGAAAATGTTTTTCTATGTAATTATTTTTTATCCATTGTAATTAATAA AATACTAATTTAGAAAAGTTATTTATTTGCTGAATACACGCTTTTCTTTT ATAAAAGTGGTGTTTTTCATTTCATCATGGATGAAATTAATTTTCTGGGG AAAATAATCCTAAAAATCTTCTTACAACATTTTTATAAGTAAGAATTGAA CATGTTATACGAACCTAAAGCATAACATGGCATTTTTGTGAAAGAAGGTA ATTGGTAATTTATAGTTTTAAAATGTTCTAAAAATGGAATTCTTGGCATA TTTTGCCAAATTCTATGTATGATCGTGATATTCTGGCACATTCTTAATTT TTTGGCCAATTTTATCATGAATATTCGTAAATGAGTAAATTATCAAAGGA AAAACTCATTCTTCGACCCAAGTTTGACAAGACCTAGGTCGAAAAAACTT GTAACTGGGTATTTTGCCAGAACTGTTGAACAACTTCTTTCTTAAATTTG GTCGGTCTTTTAATAAAAGTTGCAAATACCTTTGTAGCTTTTGATGCAGG TCATTTTGTCAGTACTAAATCTCCAAATGAAAACTTTGTAGATTTGTCCA TGGTAGAATTTATTAATTTGTCAGCTGATATTTATTTATTCCTACACAAA ATTTCAAAAATGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012084XLOC_012084Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021552-exon-sc0000389-1575043694:108142..108181TCONS_00021552-exon-sc0000389-1575043694:108142..108181Clytia hemisphaericaexon
TCONS_00021552-exon-sc0000389-1575043694:107641..107880TCONS_00021552-exon-sc0000389-1575043694:107641..107880Clytia hemisphaericaexon
TCONS_00021552-exon-sc0000389-1575043694:107290..107340TCONS_00021552-exon-sc0000389-1575043694:107290..107340Clytia hemisphaericaexon
TCONS_00021552-exon-sc0000389-1575043694:106534..107002TCONS_00021552-exon-sc0000389-1575043694:106534..107002Clytia hemisphaericaexon
TCONS_00021552-exon-sc0000389-1575043694:106254..106389TCONS_00021552-exon-sc0000389-1575043694:106254..106389Clytia hemisphaericaexon
TCONS_00021552-exon-sc0000389-1575043694:106038..106087TCONS_00021552-exon-sc0000389-1575043694:106038..106087Clytia hemisphaericaexon
TCONS_00021552-exon-sc0000389-1575043694:105271..105379TCONS_00021552-exon-sc0000389-1575043694:105271..105379Clytia hemisphaericaexon
TCONS_00021552-exon-sc0000389-1575043694:102817..105032TCONS_00021552-exon-sc0000389-1575043694:102817..105032Clytia hemisphaericaexon
TCONS_00021552-exon-sc0000389-1510915933:108142..108181TCONS_00021552-exon-sc0000389-1510915933:108142..108181Clytia hemisphaericaexon
TCONS_00021552-exon-sc0000389-1510915933:107641..107880TCONS_00021552-exon-sc0000389-1510915933:107641..107880Clytia hemisphaericaexon
TCONS_00021552-exon-sc0000389-1510915933:107290..107340TCONS_00021552-exon-sc0000389-1510915933:107290..107340Clytia hemisphaericaexon
TCONS_00021552-exon-sc0000389-1510915933:106534..107002TCONS_00021552-exon-sc0000389-1510915933:106534..107002Clytia hemisphaericaexon
TCONS_00021552-exon-sc0000389-1510915933:106254..106389TCONS_00021552-exon-sc0000389-1510915933:106254..106389Clytia hemisphaericaexon
TCONS_00021552-exon-sc0000389-1510915933:106038..106087TCONS_00021552-exon-sc0000389-1510915933:106038..106087Clytia hemisphaericaexon
TCONS_00021552-exon-sc0000389-1510915933:105271..105379TCONS_00021552-exon-sc0000389-1510915933:105271..105379Clytia hemisphaericaexon
TCONS_00021552-exon-sc0000389-1510915933:102817..105032TCONS_00021552-exon-sc0000389-1510915933:102817..105032Clytia hemisphaericaexon
TCONS_00021552-exon-sc0000389-1491911889:108142..108181TCONS_00021552-exon-sc0000389-1491911889:108142..108181Clytia hemisphaericaexon
TCONS_00021552-exon-sc0000389-1491911889:107641..107880TCONS_00021552-exon-sc0000389-1491911889:107641..107880Clytia hemisphaericaexon
TCONS_00021552-exon-sc0000389-1491911889:107290..107340TCONS_00021552-exon-sc0000389-1491911889:107290..107340Clytia hemisphaericaexon
TCONS_00021552-exon-sc0000389-1491911889:106534..107002TCONS_00021552-exon-sc0000389-1491911889:106534..107002Clytia hemisphaericaexon
TCONS_00021552-exon-sc0000389-1491911889:106254..106389TCONS_00021552-exon-sc0000389-1491911889:106254..106389Clytia hemisphaericaexon
TCONS_00021552-exon-sc0000389-1491911889:106038..106087TCONS_00021552-exon-sc0000389-1491911889:106038..106087Clytia hemisphaericaexon
TCONS_00021552-exon-sc0000389-1491911889:105271..105379TCONS_00021552-exon-sc0000389-1491911889:105271..105379Clytia hemisphaericaexon
TCONS_00021552-exon-sc0000389-1491911889:102817..105032TCONS_00021552-exon-sc0000389-1491911889:102817..105032Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000389supercontigsc0000389:102817..108181 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.47478 4.35994 4.14796 3.74888 5.57111 5.95306 3.14476 2.75453 2.5836 2.33976 0.773282 1.75174 1.10193 1.21109 1.85387 3.52498 3.54642 3.80432 3.79571 3.52517 1.70905 2.11007 6.00072 7.91885 1.54987 1.28557 3.00455 2.51772 7.83033 7.84271
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021552 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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