TCONS_00021580 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021580
Unique NameTCONS_00021580
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1965

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021580 ID=TCONS_00021580|Name=TCONS_00021580|organism=Clytia hemisphaerica|type=transcript|length=1965bp
CCCTAAGAAAGCTGAAGGTCTAACCTgatctaacttaaattttgagctgt
tactttttaaaattggttCAGTAGTTTTTGAATTAAATCGGTTCTCAAAA
AAATGGGTGATTAAATTGTCAACGAGAAAGAGACAGAActgaaaaaaaca
tgtatctatCTCTCCATAATGTTTGTATTAgcacaattttttattttttt
gaaaataatcacAAGCTACCTTAAGGGATTTTGTTGACCTACGGACctca
aaaattaattcccgtaaaaattttcaaaattggtcatccgcaaaaataaa
tttaacgaaaaattttctttaagtttcatttcaaagctttttttgCTAAT
AAGCACAACTACAAGAAGTTTTTAACAGAAGATATAAAGTAATGCGATAC
GCTACTATCTCCTTGAGAAATCAATTTCAAgaagaaaattcatttttcat
tgaaaattaacAAGAATTTTAGACccatttgaatgaatttttttctaagc
ACACTAATTGATGTCTGCCATTTTTGTACAAAATGTATCAACCGAATTTt
ggttcatgaaaatttttatttcatgctAGCTGACCGCAAAATTTCATTCC
CGTAAATATTAAGATAATTTAACGaccgcaaaaaaaaaatttttgatggt
CCGCAAAAGTTAGTTCCCTTACTGTCCCTTAAGGtattataaacaaaaac
ttaaaaaatatatcaTTCCAGCTTCTTTGGATTTCCTATTTTCAAGGGAG
TTCATAATTTTTAGAGAATGACTTGGTTCACTTTTTTAAagtgtttcttt
ttttataataattctAATGCAGGGTCAGTAAAAAAAATGCAGGTGTtgtt
aaaaaaagagaaatgaaaAGCTAGTCTATCTAGTGAtcccattttctttt
ctttcagtaAGGNGGGTCAGTAAAAAAAATGCAGGTGTtgttaaaaaaag
agaaatgaaaAGCTAGTCTATCTAGTGAtcccattttcttttctttcagt
aAGGTCTCCGTACCCACTTTCTACAGGAACAATAATAACCAATTTGGGGC
TTAAAGATATTATCGTAAAGTTTATTTTGAATCCTAGGCAAATTATGGTT
CTGCACAAACTTATGGAGATGATGTTGTTGAGCCAGATACCAGGCAAGTC
GAAGCCATGCGCAAATTGTTCATTGGTGGTTTACGAAGAGAGACTCAAGA
GGAGACCTTTAATGATTATTTTGCCCGATTCGGCGCCATAGCTGATGTAG
TTATCATAAAAGATCCGAATAGTGGACAATCAAGGGGATTCGGCTTTGTT
ACTTATAACAACTCTGACTCAGTGGAAGAAGTGTTCAGAACTCGGCCTCA
TGAGTTGGATGGAAAAACAGTGGATTGTAAACGAGCTATGCCAAGAGAGT
TCAATGCCTCATCTAGTCATGCTAAAACTACAAGATTGTTTGTTGGTGGA
TTTAAAGGCTTTGACCTGGAGCCAGAAGAACTTAAACAATATTTGGAGAG
TAGACATCCAACATCATTTGGAACTGTAGACAATATTGATTTCTTGAAAG
ACAAGGAGACAGGAACCAATAAAGGCTTTGGATTCATTGATTGTTCTGAT
ACGGACTTCGCTGACCGACTTGCTATCAGCGAAAATCAATTTGAactgaa
aggaagaaaaatgtCTATAAAAAAAGCAGAACCTAAAGATGGTGGTTCTG
GTGATCAATATGGCGGACGTGGTGGTGGACGAGGTGGCGGACGAGGCCGA
GGCCGAGGTGGTAGCAGAGGTGGTGGTAGAGGTGGAAGCAATTACCAAAA
CTCATCAGGGTTCGGTAATCAAAGTTCAGGTGGCTACAATCCAGGCTACA
ATAGCAATCAAGGATATAATCAAGGCTACAACTCGCAGAGTAACCAGAGT
AACTATGGAAACCAAGGAAGCTATGGAAACCAAGGAAGCTATGGAAACCA
AGGAAGCTATGGAAA
Run BLAST on NCBI

protein sequence of TCONS_00021580-protein

>TCONS_00021580-protein ID=TCONS_00021580-protein|Name=TCONS_00021580-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
MRKLFIGGLRRETQEETFNDYFARFGAIADVVIIKDPNSGQSRGFGFVTY
NNSDSVEEVFRTRPHELDGKTVDCKRAMPREFNASSSHAKTTRLFVGGFK
GFDLEPEELKQYLESRHPTSFGTVDNIDFLKDKETGTNKGFGFIDCSDTD
FADRLAISENQFELKGRKMSIKKAEPKDGGSGDQYGGRGGGRGGGRGRGR
GGSRGGGRGGSNYQNSSGFGNQSSGGYNPGYNSNQGYNQGYNSQSNQSNY
GNQGSYGNQGSYGNQGSYG
Run BLAST on NCBI

transcript from alignment at sc0000390:1..2091-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021580 ID=TCONS_00021580|Name=TCONS_00021580|organism=Clytia hemisphaerica|type=transcript|length=2091bp|location=Sequence derived from alignment at sc0000390:1..2091- (Clytia hemisphaerica)
CCCTAAGAAAGCTGAAGGTCTAACCTGATCTAACTTAAATTTTGAGCTGT
TACTTTTTAAAATTGGTTCAGTAGTTTTTGAATTAAATCGGTTCTCAAAA
AAATGGGTGATTAAATTGTCAACGAGAAAGAGACAGAACTGAAAAAAACA
TGTATCTATCTCTCCATAATGTTTGTATTAGCACAATTTTTTATTTTTTT
GAAAATAATCACAAGCTACCTTAAGGGATTTTGTTGACCTACGGACCTCA
AAAATTAATTCCCGTAAAAATTTTCAAAATTGGTCATCCGCAAAAATAAA
TTTAACGAAAAATTTTCTTTAAGTTTCATTTCAAAGCTTTTTTTGCTAAT
AAGCACAACTACAAGAAGTTTTTAACAGAAGATATAAAGTAATGCGATAC
GCTACTATCTCCTTGAGAAATCAATTTCAAGAAGAAAATTCATTTTTCAT
TGAAAATTAACAAGAATTTTAGACCCATTTGAATGAATTTTTTTCTAAGC
ACACTAATTGATGTCTGCCATTTTTGTACAAAATGTATCAACCGAATTTT
GGTTCATGAAAATTTTTATTTCATGCTAGCTGACCGCAAAATTTCATTCC
CGTAAATATTAAGATAATTTAACGACCGCAAAAAAAAAATTTTTGATGGT
CCGCAAAAGTTAGTTCCCTTACTGTCCCTTAAGGTATTATAAACAAAAAC
TTAAAAAATATATCATTCCAGCTTCTTTGGATTTCCTATTTTCAAGGGAG
TTCATAATTTTTAGAGAATGACTTGGTTCACTTTTTTAAAGTGTTTCTTT
TTTTATAATAATTCTAATGCAGGGTCAGTAAAAAAAATGCAGGTGTTGTT
AAAAAAAGAGAAATGAAAAGCTAGTCTATCTAGTGATCCCATTTTCTTTT
CTTTCAGTAAGGNGGGTCAGTAAAAAAAATGCAGGTGTTGTTAAAAAAAG
AGAAATGAAAAGCTAGTCTATCTAGTGATCCCATTTTCTTTTCTTTCAGT
AAGGTCTCCGTACCCACTTTCTACAGGAACAATAATAACCAATTTGGGGC
TTAAAGATATTATCGTAAAGTTTATTTTGAATCCTAGGCAAATTATGGTT
CTGCACAAACTTATGGAGATGATGTTGTTGAGCCAGATACCAGGCAAGTC
GAAGCCATGCGCAAATTGTTCATTGGTGGTTTACGAAGAGAGACTCAAGA
GGAGACCTTTAATGATTATTTTGCCCGATTCGGCGCCATAGCTGATGTAG
TTATCATAAAAGATCCGAATAGTGGACAATCAAGGGGATTCGGCTTTGTT
ACTTATAACAACTCTGACTCAGTGGAAGAAGTGTTCAGAACTCGGCCTCA
TGAGTTGGATGGAAAAACAGTGGATTGTAAACGAGCTATGCCAAGAGAGT
TCAATGCCTCATCTAGTCATGCTAAAACTACAAGATTGTTTGTTGGTGGA
TTTAAAGGCTTTGACCTGGAGCCAGAAGAACTTAAACAATATTTGGAGAG
TAGACATCCAACATCATTTGGAACTGTAGACAATATTGATTTCTTGAAAG
ACAAGGAGACAGGAACCAATAAAGGCTTTGGATTCATTGATTGTTCTGAT
ACGGACTTCGCTGACCGACTTGCTATCAGCGAAAATCAATTTGAACTGAA
AGGAAGAAAAATGTCTATAAAAAAAGCAGAACCTAAAGATGGTGGTTCTG
GTGATCAATATGGCGGTAAGACTGTGTGTTTCCATTGCTATCATAAATTA
TGATAATCGAAGATTTCTGCTACACAAGTTATAAGCCTAAAATTTAATCT
ACACTGTTGTTTTGATTGCAAATTTGCTACCTTTCTTTCAGGACGTGGTG
GTGGACGAGGTGGCGGACGAGGCCGAGGCCGAGGTGGTAGCAGAGGTGGT
GGTAGAGGTGGAAGCAATTACCAAAACTCATCAGGGTTCGGTAATCAAAG
TTCAGGTGGCTACAATCCAGGCTACAATAGCAATCAAGGATATAATCAAG
GCTACAACTCGCAGAGTAACCAGAGTAACTATGGAAACCAAGGAAGCTAT
GGAAACCAAGGAAGCTATGGAAACCAAGGAAGCTATGGAAA

Coding sequence (CDS) from alignment at sc0000390:1..2091-

>TCONS_00021580 ID=TCONS_00021580|Name=TCONS_00021580|organism=Clytia hemisphaerica|type=CDS|length=1614bp|location=Sequence derived from alignment at sc0000390:1..2091- (Clytia hemisphaerica)
GACGTGGTGGTGGACGAGGTGGCGGACGAGGCCGAGGCCGAGGTGGTAGC
AGAGGTGGTGGTAGAGGTGGAAGCAATTACCAAAACTCATCAGGGTTCGG
TAATCAAAGTTCAGGTGGCTACAATCCAGGCTACAATAGCAATCAAGGAT
ATAATCAAGGCTACAACTCGCAGAGTAACCAGAGTAACTATGGAAACCAA
GGAAGCTATGGAAACCAAGGAAGCTATGGAAACCAAGGAAGCTATGGAAT
GCGCAAATTGTTCATTGGTGGTTTACGAAGAGAGACTCAAGAGGAGACCT
TTAATGATTATTTTGCCCGATTCGGCGCCATAGCTGATGTAGTTATCATA
AAAGATCCGAATAGTGGACAATCAAGGGGATTCGGCTTTGTTACTTATAA
CAACTCTGACTCAGTGGAAGAAGTGTTCAGAACTCGGCCTCATGAGTTGG
ATGGAAAAACAGTGGATTGTAAACGAGCTATGCCAAGAGAGTTCAATGCC
TCATCTAGTCATGCTAAAACTACAAGATTGTTTGTTGGTGGATTTAAAGG
CTTTGACCTGGAGCCAGAAGAACTTAAACAATATTTGGAGAGTAGACATC
CAACATCATTTGGAACTGTAGACAATATTGATTTCTTGAAAGACAAGGAG
ACAGGAACCAATAAAGGCTTTGGATTCATTGATTGTTCTGATACGGACTT
CGCTGACCGACTTGCTATCAGCGAAAATCAATTTGAACTGAAAGGAAGAA
AAATGTCTATAAAAAAAGCAGAACCTAAAGATGGTGGTTCTGGTGATCAA
TATGGCGGACGTGGTGGTGGACGAGGTGGCGGACGAGGCCGAGGCCGAGG
TGGTAGCAGAGGTGGTGGTAGAGGTGGAAGCAATTACCAAAACTCATCAG
GGTTCGGTAATCAAAGTTCAGGTGGCTACAATCCAGGCTACAATAGCAAT
CAAGGATATAATCAAGGCTACAACTCGCAGAGTAACCAGAGTAACTATGG
AAACCAAGGAAGCTATGGAAACCAAGGAAGCTATGGAAACCAAGGAAGCT
ATGGAATGCGCAAATTGTTCATTGGTGGTTTACGAAGAGAGACTCAAGAG
GAGACCTTTAATGATTATTTTGCCCGATTCGGCGCCATAGCTGATGTAGT
TATCATAAAAGATCCGAATAGTGGACAATCAAGGGGATTCGGCTTTGTTA
CTTATAACAACTCTGACTCAGTGGAAGAAGTGTTCAGAACTCGGCCTCAT
GAGTTGGATGGAAAAACAGTGGATTGTAAACGAGCTATGCCAAGAGAGTT
CAATGCCTCATCTAGTCATGCTAAAACTACAAGATTGTTTGTTGGTGGAT
TTAAAGGCTTTGACCTGGAGCCAGAAGAACTTAAACAATATTTGGAGAGT
AGACATCCAACATCATTTGGAACTGTAGACAATATTGATTTCTTGAAAGA
CAAGGAGACAGGAACCAATAAAGGCTTTGGATTCATTGATTGTTCTGATA
CGGACTTCGCTGACCGACTTGCTATCAGCGAAAATCAATTTGAACTGAAA
GGAAGAAAAATGTCTATAAAAAAAGCAGAACCTAAAGATGGTGGTTCTGG
TGATCAATATGGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012105XLOC_012105Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021580-proteinTCONS_00021580-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021580-exon-sc0000390-1575043694:377..2091TCONS_00021580-exon-sc0000390-1575043694:377..2091Clytia hemisphaericaexon
TCONS_00021580-exon-sc0000390-1575043694:1..250TCONS_00021580-exon-sc0000390-1575043694:1..250Clytia hemisphaericaexon
TCONS_00021580-exon-sc0000390-1510915933:377..2091TCONS_00021580-exon-sc0000390-1510915933:377..2091Clytia hemisphaericaexon
TCONS_00021580-exon-sc0000390-1510915933:1..250TCONS_00021580-exon-sc0000390-1510915933:1..250Clytia hemisphaericaexon
TCONS_00021580-exon-sc0000390-1491911889:377..2091TCONS_00021580-exon-sc0000390-1491911889:377..2091Clytia hemisphaericaexon
TCONS_00021580-exon-sc0000390-1491911889:1..250TCONS_00021580-exon-sc0000390-1491911889:1..250Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000390supercontigsc0000390:1..2091 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
91.2602	82.7673	148.967	159.37	247.801	203.588	158.708	177.761	102.765	115.439	122.18	109.461	123.942	125.296	125.817	141.041	130.086	142.693	31.9793	32.1155	103.179	104.447	82.8156	85.0635	129.804	156.405	60.6149	60.6097	59.8287	59.4709
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00021580 vs. Swiss-Prot (Human)
Match: ROA2 (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 4.978e-34
Identity = 69/185 (37.30%), Postives = 109/185 (58.92%), Query Frame = 2 
Query: 1127 VEPDTRQVEAMRKLFIGGLRRETQEETFNDYFARFGAIADVVIIKDPNSGQSRGFGFVTYNNSDSVEEVFRTRPHELDGKTVDCKRAMPREFNAS-SSHAKTTRLFVGGFKGFDLEPEELKQYLESRHPTSFGTVDNIDFLKDKETGTNKGFGFIDCSDTDFADRLAISENQFELKGRKMSIKKA 1678
            +E   R+ E  RKLFIGGL  ET EE+  +Y+ ++G + D V+++DP S +SRGFGFVT+++   V+     RPH +DG+ V+ KRA+ RE +    +H    +LFVGG K  D E   L+ Y E      +G +D I+ + D+++G  +GFGF+   D D  D++ + +    + G    ++KA
Sbjct:   10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKE-DTEEHHLRDYFE-----EYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVL-QKYHTINGHNAEVRKA 187
The following BLAST results are available for this feature:
BLAST of TCONS_00021580 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ROA24.978e-3437.30Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
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