TCONS_00021629 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021629
Unique NameTCONS_00021629
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length262

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021629 ID=TCONS_00021629|Name=TCONS_00021629|organism=Clytia hemisphaerica|type=transcript|length=262bp
CTGTCATGGTGAATTTATGATCTACCATTTTATAACTATTGCTATAGTAA
CCAACTCTATAGCCATCTTATTCAGCATTTAATTATATGATGCTTAGTGa
atgaatttaaaaacacttctatGTTTGGGCTGGCAGAGTGAAGAGCTTGA
AAAGCTTAACGATCGTATCGTGGAAGAATGTAGACGTATTGGTTTTGTAC
GGGAACGAGGAACGTTGCCCATGAGTCGATTGAGAGATGGCCTTTGTATT
GAGCTGCGAGGA
Run BLAST on NCBI

transcript from alignment at sc0000390:284053..284314

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021629 ID=TCONS_00021629|Name=TCONS_00021629|organism=Clytia hemisphaerica|type=transcript|length=262bp|location=Sequence derived from alignment at sc0000390:284053..284314 (Clytia hemisphaerica)
TCCTCGCAGCTCAATACAAAGGCCATCTCTCAATCGACTCATGGGCAACG
TTCCTCGTTCCCGTACAAAACCAATACGTCTACATTCTTCCACGATACGA
TCGTTAAGCTTTTCAAGCTCTTCACTCTGCCAGCCCAAACatagaagtgt
ttttaaattcattCACTAAGCATCATATAATTAAATGCTGAATAAGATGG
CTATAGAGTTGGTTACTATAGCAATAGTTATAAAATGGTAGATCATAAAT
TCACCATGACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012126XLOC_012126Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021629-exon-sc0000390-1491911889:284053..284314TCONS_00021629-exon-sc0000390-1491911889:284053..284314Clytia hemisphaericaexon
TCONS_00021629-exon-sc0000390-1510915933:284053..284314TCONS_00021629-exon-sc0000390-1510915933:284053..284314Clytia hemisphaericaexon
TCONS_00021629-exon-sc0000390-1575043694:284053..284314TCONS_00021629-exon-sc0000390-1575043694:284053..284314Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000390supercontigsc0000390:284053..284314 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	3.39447	3.60615	2.51084	0.859015	1.35761	4.77896	4.87875	10.2736	5.69315	14.6012	5.89577	7.85962	12.7236	1.65589	11.3946	5.17978	11.377	4.74547	6.87481	12.3221	4.9788	7.55108	5.63769	0.849079	3.7522	5.89526	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021629 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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